Non-Coding RNA Search

Ss1.1-Utr1-UTR010052D07.5

Sequence:


               
               ATCGCCAGAGAGATCCGAGGCGAGCCTCGCGCGCCCGCCCCCGCCCTGGCCCCCAGCTCC
CACCCGGTGGGCCCGGCTCAGCCATGATCAAGGCGATCCTCATCTTTAATAACCACGGGA
AGCCGCGGCTCTCCAAGTTCTACCAGCCCTACAGTGAAGATACACAACAGCAAATCATCA
GGGAGACATTCCATTTGGTGTCTAAGAGGGATGAGAATGTTTGTAATTTCCTAGAAGGAG
GATTATTAATTGGAGGATCTGACAACAAACTGATTTATAGACATTATGCAACATTGTATT
TTGTCTTCTGTGTGGATTCTTCAGAAAGTGAACTTGGCATTTTAGATCTAATTCAAGTAT
TTGTGGAAACATTAGACAAGTGTTTTGAAAATGTCTGTGAACTGGATTTAATTTTCCATG
TAGATAAGGTTCACAATATTCTTGCAGAAATGGTGATGGGAGGAATGGTATTGGAGACCA
ACATGAATGAGATTGTTACACAAATTGATGCGCAAAATAAACTGGAGAAATCTGAGGCTG
GCTTAGCAGGAGCTCCAGCCCGTGCTGTATCAGCTGTAAAGAATATGAATCTTCCTGAGA
TCCCAAGAAATATTAACATTGGTGACATCAGTATAAAAGTGCCAAACCTGCCCTCTTTTA
AATAAAAAATTTAAAAGGCCACTCCCAGGTAAAATCCAGGGGGAAGAGTCATCTAAGTTT
ACCATGCAGTTGTTTACCAAAAATAGAGGAGGAGAGTCTTAACTTTTGCTCTTGGATTTA
AGTCAAGGTACTGTATAGAAGTTATGTAAAATCTGTATCGAAGTTCAACATTGCTTTTCT
TGCTCAGTGATTTTGAAGAAATTGAGTAGTTCCAAGTGTGATTTTTTCTTTCTTTTCTAA
ACTGCATTCCTATGGCCACCTAAGGCATGCCTCTATGTATTGGCTACTACAGTATTCCGA
AAAGTGTTTTGAGACATCTCTTTAAATTATGTACAACCCAAAATGTTGGTGTTTTGTATG
GATCACAAGTGCAGCGTTCCTTAATTCCTTCTGTTATCTGTCACAATTGTTATTTAAAGA
ACCAAGTATGTATTGCATGAAAACATTATAACCTTTTCCTCTTAGTTTAAATAAACTCCA
AGGTAACTGGACTTCTAAAGCACCTTTCTGTTTGCCTGATATCTACTTTAGCAATAATTT
TTTTTATGACCCTCTGACTCAACAAAGTAAATAAAAGTATATTTTATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCGCCAGAGAGATCCGAGGCGAGCCTCGCGCGCCCGCCCCCGCCCTGGCCCCCAGCTCC
CACCCGGTGGGCCCGGCTCAGCCATGATCAAGGCGATCCTCATCTTTAATAACCACGGGA
AGCCGCGGCTCTCCAAGTTCTACCAGCCCTACAGTGAAGATACACAACAGCAAATCATCA
GGGAGACATTCCATTTGGTGTCTAAGAGGGATGAGAATGTTTGTAATTTCCTAGAAGGAG
GATTATTAATTGGAGGATCTGACAACAAACTGATTTATAGACATTATGCAACATTGTATT
TTGTCTTCTGTGTGGATTCTTCAGAAAGTGAACTTGGCATTTTAGATCTAATTCAAGTAT
TTGTGGAAACATTAGACAAGTGTTTTGAAAATGTCTGTGAACTGGATTTAATTTTCCATG
TAGATAAGGTTCACAATATTCTTGCAGAAATGGTGATGGGAGGAATGGTATTGGAGACCA
ACATGAATGAGATTGTTACACAAATTGATGCGCAAAATAAACTGGAGAAATCTGAGGCTG
GCTTAGCAGGAGCTCCAGCCCGTGCTGTATCAGCTGTAAAGAATATGAATCTTCCTGAGA
TCCCAAGAAATATTAACATTGGTGACATCAGTATAAAAGTGCCAAACCTGCCCTCTTTTA
AATAAAAAATTTAAAAGGCCACTCCCAGGTAAAATCCAGGGGGAAGAGTCATCTAAGTTT
ACCATGCAGTTGTTTACCAAAAATAGAGGAGGAGAGTCTTAACTTTTGCTCTTGGATTTA
AGTCAAGGTACTGTATAGAAGTTATGTAAAATCTGTATCGAAGTTCAACATTGCTTTTCT
TGCTCAGTGATTTTGAAGAAATTGAGTAGTTCCAAGTGTGATTTTTTCTTTCTTTTCTAA
ACTGCATTCCTATGGCCACCTAAGGCATGCCTCTATGTATTGGCTACTACAGTATTCCGA
AAAGTGTTTTGAGACATCTCTTTAAATTATGTACAACCCAAAATGTTGGTGTTTTGTATG
GATCACAAGTGCAGCGTTCCTTAATTCCTTCTGTTATCTGTCACAATTGTTATTTAAAGA
ACCAAGTATGTATTGCATGAAAACATTATAACCTTTTCCTCTTAGTTTAAATAAACTCCA
AGGTAACTGGACTTCTAAAGCACCTTTCTGTTTGCCTGATATCTACTTTAGCAATAATTT
TTTTTATGACCCTCTGACTCAACAAAGTAAATAAAAGTATATTTTATC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|6753078|ref|NP_033811.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6753078|ref|NP_033811.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               350-469, + strand, RNAz p=0.940772

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               350-469, + strand, RNAz p=0.940772

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               71-1151, gnl|bosTau2|chr11 (36990223-36991304)
               

               
               71-1151, gnl|Hg17|chr1 (211045138-211044058)
               

               
               71-1151, gnl|Mm7|chr8 (92994243-92995325)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               71-1151, gnl|bosTau2|chr11 (36990223-36991304)
               

               
               71-1151, gnl|Hg17|chr1 (211045138-211044058)
               

               
               71-1151, gnl|Mm7|chr8 (92994243-92995325)

Expressed library(ies): 47 entry(ies)

More info

Expressed library(ies): 47 entry(ies)

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               tes (0.831255)
               

               
               fco (0.78604)
               

               
               lin (0.728014)
               

               
               sag (0.548145)
               

               
               mgm (0.541028)
               

               
               sug (0.509165)
               

               
               ski (0.440205)
               

               
               amn (0.417711)
               

               
               pla (0.401016)
               

               
               lyg (0.399308)
               

               
               pgl (0.35545)
               

               
               gul (0.355177)
               

               
               mcp (0.341297)
               

               
               spc (0.340097)
               

               
               vin (0.332557)
               

               
               bfe (0.299715)
               

               
               fat (0.294855)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               nca (0.273748)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               clu (0.239292)
               

               
               pan (0.23596)
               

               
               ecc (0.23007)
               

               
               cbl (0.229595)
               

               
               ece (0.229305)
               

               
               nep (0.183925)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 47 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.831255)
               

               
               fco (0.78604)
               

               
               lin (0.728014)
               

               
               sag (0.548145)
               

               
               mgm (0.541028)
               

               
               sug (0.509165)
               

               
               ski (0.440205)
               

               
               amn (0.417711)
               

               
               pla (0.401016)
               

               
               lyg (0.399308)
               

               
               pgl (0.35545)
               

               
               gul (0.355177)
               

               
               mcp (0.341297)
               

               
               spc (0.340097)
               

               
               vin (0.332557)
               

               
               bfe (0.299715)
               

               
               fat (0.294855)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               nca (0.273748)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               clu (0.239292)
               

               
               pan (0.23596)
               

               
               ecc (0.23007)
               

               
               cbl (0.229595)
               

               
               ece (0.229305)
               

               
               nep (0.183925)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	71-1151, gnl\|bosTau2\|chr11 (36990223-36991304)
	71-1151, gnl\|Hg17\|chr1 (211045138-211044058)
	71-1151, gnl\|Mm7\|chr8 (92994243-92995325)

	tes (0.831255)
	fco (0.78604)
	lin (0.728014)
	sag (0.548145)
	mgm (0.541028)
	sug (0.509165)
	ski (0.440205)
	amn (0.417711)
	pla (0.401016)
	lyg (0.399308)
	pgl (0.35545)
	gul (0.355177)
	mcp (0.341297)
	spc (0.340097)
	vin (0.332557)
	bfe (0.299715)
	fat (0.294855)
	cte (0.29274)
	liv (0.292569)
	spl (0.286369)
	nca (0.273748)
	kid (0.259471)
	ret (0.257467)
	tra (0.246184)
	clu (0.239292)
	pan (0.23596)
	ecc (0.23007)
	cbl (0.229595)
	ece (0.229305)
	nep (0.183925)
	sin (0.174948)
	duo (0.172801)
	fhi (0.169578)
	nje (0.16592)
	nco (0.161734)
	mga (0.160205)
	tbr (0.154178)
	ssp (0.13552)
	ova (0.129132)
	thg (0.126791)
	eep (0.122564)
	eru (0.120048)
	ebs (0.118301)
	jca (0.11396)
	nbm (0.0993246)
	jej (0.0989218)
	eje (0.0988338)