Ss1.1-Utr1-UTR010053A05.5
|
TTTTCCTGGTTCGCCGGCGGCCATTTTGGGTGGAAGCGACAGCTGAGTGGTGGCTGCTGC
TGATTGTGTTCTAAGGGGACGGAGTGGGGGGAAGACGTTTGCTCTCCCGGAACAGCCTAT
CTCATTCCTCTCCTTCGACTACCCGTGGCGCGGAGAGTCAGGGCGGCGGCTGCAGCAGCA
AGGGCGGCGGTGGTGGCGGCGGCGGCAGCAGCTGCAGTGACATGTCCAGCATGAATCCCG
AATATGATTATTTATTCAAGTTACTTCTGATTGGCGACTCTGGGGTTGGAAAGTCTTGCC
TCCTTCTTAGGTTTGCAGATGATACATATACAGAAAGCTATATCAGCACAATTGGTGTGG
ATTTCAAAATAAGAACTATAGAGTTAGATGGGAAAACAATCAAACTTCAAATATGGGACA
CAGCAGGCCAAGAAAGATTTCGAACAATCACCTCCAGTTACTACAGAGGAGCCCATGGCA
TCATAGTTGTGTATGATGTGACAGATCAGGAGTCCTTCAATAACGTTAAACAGTGGCTAC
AAGAAATAGATCGTTATGCCAGTGAAAACGTCAACAAGTTGTTGGTAGGGAACAAATGTG
ATTTGACCACAAAGAAAGTAGTAGACTACACAACAGCAAAGGAATTTGCTGATTCCCTTG
GAATTCCATTTTTGGAAACCAGTGCTAAGAATGCAACGAATGTAGAACAGTCTTTCATGA
CGATGGCAGCTGAGATTAAAAAACGAATGGGTCCTGGAGCAACAGCTGGCGGTGCAGAGA
AGTCCAATGTTAAAATTCAGAGCACTCCAGTCAAGCAGTCAGGTGGAGGTTGCTGCTAAA
ATTCACCTCCGTCCTTTTCTCACAGCAATGAATTTGCAATCTGAACCCAAGTGAAAAAAC
AAAATTGCCTGAATTGTACTGTATGTAGCTGCACTACAACAGATTCTTACCGTCTCCACA
AAGGTCAGAGATTGTAAATGGTCAATACTGACTTTTTTTTTATTCCCTTGACTCAAGACA
GCTAACTTCATTTTCAGAACTGTTTTAAACCTTTGTGTGCTGGTTTATAAAATAATGTGT
GTAATCCTTGTTGCTTTCCTGATACCAGACTGTTTCCCGTGGTTGGTTAGAATATATTTT
GTTTTGATGTTTATATTGGCATGTTTAGATGTCAGGTTTAGTCTTCTGAAGATGAAGTTC
AGCCATTTTGTATCAAACAGCACAACCAGTGTCTGTCACTTTCCATGCATAAAGTTTAGT
GAGATGTTATATGTAAGATCTGATTTGCTAGTTCTTCCTTGTAGAGTTATAAATGGAAAG
ATTACACTATCTGATTAATAGTTTCTTCATACTCTGCATATAATTTGTGGCTGCAGAATA
TTGTAATTTGTTGCACACTATGTAACAAGACAACTGAAGATATGTTTAATAAATATTGTA
CTTATTGGAAGTAATATCAAACTGTATGGTGATAAGTATTGTTTTACTTCTTATGGCTAA
AGGGAAAGAGCCTTGCATTATACTCAAAACAGCCATTTGTGTGTGCAACCAGGGCACTGT
AGACCTATCTTAGAGCAGCATCCAATTTATGCTTTTCAGGTAATACACCCAATAAATGAC
CTAGGGAGGCTTCTGTGCTGCATAGGGATTTAACCAAGCTTAGTGGTTCAGGGAGATTAA
ATTGTATGAAAATAAATTTAGAATGTATGCTATCTAGCCTATTATCTCTGATCCTTCTCT
TAAACCATTTGAAATACTTCATGATCAACATTTTGTTAATTCTTCTGTGGTTGAGGTGGA
GAGCAGTACACTGTTCCTGATTGGCAGATTATTAAACTAACTTGTGTGCTAATATTTTTT
TCTTCCAAGCTCAAAGTTAGATGTCAACTCTTTTATCCTCCACAATCGTGTAACTTAGGT
TGGAGGAGAGTCAAAGCATTGAAGTAGATAGCAGGAAATTTACTATCGGCCCTAATTTTA
GACATTTTATCCCTTAAAATTAGCTGAAAACATGAATGCTGGGTGGGAATGAGAGAAATA
TATTTATTTCAGTCGAATTTTGCACATGTGAAAATTTTGTTAACTAGGACAGTAATGATC
CTAAGGTTTGTTTTTATTGTGGGAACAAAAATCTTTTGCTAACACTGGCATTTTAAAGTG
AAAGTAGTCAAAGATTGTTTCCTTGGGGTTCAAGTAGCAGCCAAAACATTCTTTACTTAG
GGGCTTGGGATGTGGCTGTTGGCAACACATTTTATGGTGGGGTCTTTAATTCAGTGATAA
AATTTAAACTAAGAACAAGCCAAAAATTACAGGTTTCTTTATTTTCACTAAACAGGCAAC
TGAAATACATGGTACAAAAATAAGTGGTAAGATTATTGTAAAATGAAATGGACAGAATAA
ATATTCAATTTAATTTTCCATCTATGAGAATTTCACAATAAAATTACAGTTTACTTTGTA
TTATAGACGTGCTTGTTGGATCTATTCATCCTCACATAAGGCAACTGAAAAATTCCTCAA
GTTACCAACAGTTATTTGGGTGAAGTTTTCTTTGATGCTTCAAATGGTTTGGGTTTTTTT
TGCCTTATCAATTCAGTATAATGGGGGAAAGAATCTGGAAACTATTTTTTAAAGTAGATG
ATACAAATGTTAAACAATGTGATGCACTTCCCTTTTATAAACTGTCAGCTTATTCTTGGT
GAATCATCAAAAAACATAAATTTAAGATGTAAGCATATTCACATAATGACTTACTTAGTT
TTGAAAATTCTAGTGTTCTTTCCCAGTGGCAACTGAGACTAGGGCTTACTGCAAGACGCT
TCAGCATGCTTCACTATTTGCTATTATGAACTTGCCAATAAATGCAGTTTTGAAACTATA
TATATTCCCATTCCTACCCCCATTTTCAAGTACAGACATTTCAAGCTACTGTGGGCATTA
ATAATCTGTTCACTCGGGGAGGAAATTATTGCTTATCTTACTTCAAATGTAAGTGGCTGC
CATGAATTAATCAGCTTACGGAAGTGGAGTGTTCTAAACCTAAGCAGTCACAATCTCTGG
GAAATCCTTGCAGAATGATAGCCATTCTGGTCTGAGCAGTAAGTAATCCCTGTTCTTTGA
CCCTGGACCAAAATTTCCTTCAGCATACACGTTGCCATTGGAGCATATTTTACATCAGCC
CTTCTTTATGTTCCCATCTAAGCTTCAAAATGGCCCTGTATTGACACCACATGGGGCTCC
ACAAGAACCCAGGTTTTCAAACTGCCAATCCAGCTGCAGTACTGCCACTTTCCTATGGAG
TTAATTTCTACTAATTCGGGGGGACTACTAGGAAGTTGTATTACAGGTAAACTTGGGATT
TCATAACCACACGTTATGTCACTACAAGTCACTGCTGTTCTAAGGCTAAATATGTACCAC
AGTGAATCTAACTTGGCCAGGCCTGCTTATGGAATGCTCCTGGCAGTATCTTCCTAGGTG
GAGACAGTTTGAGTTTCAAGGGAGGTTTTAAACTTCTAAAGATATCATTAACAGTTGTGT
TGATACTCTTCATGGCATTCACAACGAGCTAAAGTA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTTCCTGGTTCGCCGGCGGCCATTTTGGGTGGAAGCGACAGCTGAGTGGTGGCTGCTGC
TGATTGTGTTCTAAGGGGACGGAGTGGGGGGAAGACGTTTGCTCTCCCGGAACAGCCTAT
CTCATTCCTCTCCTTCGACTACCCGTGGCGCGGAGAGTCAGGGCGGCGGCTGCAGCAGCA
AGGGCGGCGGTGGTGGCGGCGGCGGCAGCAGCTGCAGTGACATGTCCAGCATGAATCCCG
AATATGATTATTTATTCAAGTTACTTCTGATTGGCGACTCTGGGGTTGGAAAGTCTTGCC
TCCTTCTTAGGTTTGCAGATGATACATATACAGAAAGCTATATCAGCACAATTGGTGTGG
ATTTCAAAATAAGAACTATAGAGTTAGATGGGAAAACAATCAAACTTCAAATATGGGACA
CAGCAGGCCAAGAAAGATTTCGAACAATCACCTCCAGTTACTACAGAGGAGCCCATGGCA
TCATAGTTGTGTATGATGTGACAGATCAGGAGTCCTTCAATAACGTTAAACAGTGGCTAC
AAGAAATAGATCGTTATGCCAGTGAAAACGTCAACAAGTTGTTGGTAGGGAACAAATGTG
ATTTGACCACAAAGAAAGTAGTAGACTACACAACAGCAAAGGAATTTGCTGATTCCCTTG
GAATTCCATTTTTGGAAACCAGTGCTAAGAATGCAACGAATGTAGAACAGTCTTTCATGA
CGATGGCAGCTGAGATTAAAAAACGAATGGGTCCTGGAGCAACAGCTGGCGGTGCAGAGA
AGTCCAATGTTAAAATTCAGAGCACTCCAGTCAAGCAGTCAGGTGGAGGTTGCTGCTAAA
ATTCACCTCCGTCCTTTTCTCACAGCAATGAATTTGCAATCTGAACCCAAGTGAAAAAAC
AAAATTGCCTGAATTGTACTGTATGTAGCTGCACTACAACAGATTCTTACCGTCTCCACA
AAGGTCAGAGATTGTAAATGGTCAATACTGACTTTTTTTTTATTCCCTTGACTCAAGACA
GCTAACTTCATTTTCAGAACTGTTTTAAACCTTTGTGTGCTGGTTTATAAAATAATGTGT
GTAATCCTTGTTGCTTTCCTGATACCAGACTGTTTCCCGTGGTTGGTTAGAATATATTTT
GTTTTGATGTTTATATTGGCATGTTTAGATGTCAGGTTTAGTCTTCTGAAGATGAAGTTC
AGCCATTTTGTATCAAACAGCACAACCAGTGTCTGTCACTTTCCATGCATAAAGTTTAGT
GAGATGTTATATGTAAGATCTGATTTGCTAGTTCTTCCTTGTAGAGTTATAAATGGAAAG
ATTACACTATCTGATTAATAGTTTCTTCATACTCTGCATATAATTTGTGGCTGCAGAATA
TTGTAATTTGTTGCACACTATGTAACAAGACAACTGAAGATATGTTTAATAAATATTGTA
CTTATTGGAAGTAATATCAAACTGTATGGTGATAAGTATTGTTTTACTTCTTATGGCTAA
AGGGAAAGAGCCTTGCATTATACTCAAAACAGCCATTTGTGTGTGCAACCAGGGCACTGT
AGACCTATCTTAGAGCAGCATCCAATTTATGCTTTTCAGGTAATACACCCAATAAATGAC
CTAGGGAGGCTTCTGTGCTGCATAGGGATTTAACCAAGCTTAGTGGTTCAGGGAGATTAA
ATTGTATGAAAATAAATTTAGAATGTATGCTATCTAGCCTATTATCTCTGATCCTTCTCT
TAAACCATTTGAAATACTTCATGATCAACATTTTGTTAATTCTTCTGTGGTTGAGGTGGA
GAGCAGTACACTGTTCCTGATTGGCAGATTATTAAACTAACTTGTGTGCTAATATTTTTT
TCTTCCAAGCTCAAAGTTAGATGTCAACTCTTTTATCCTCCACAATCGTGTAACTTAGGT
TGGAGGAGAGTCAAAGCATTGAAGTAGATAGCAGGAAATTTACTATCGGCCCTAATTTTA
GACATTTTATCCCTTAAAATTAGCTGAAAACATGAATGCTGGGTGGGAATGAGAGAAATA
TATTTATTTCAGTCGAATTTTGCACATGTGAAAATTTTGTTAACTAGGACAGTAATGATC
CTAAGGTTTGTTTTTATTGTGGGAACAAAAATCTTTTGCTAACACTGGCATTTTAAAGTG
AAAGTAGTCAAAGATTGTTTCCTTGGGGTTCAAGTAGCAGCCAAAACATTCTTTACTTAG
GGGCTTGGGATGTGGCTGTTGGCAACACATTTTATGGTGGGGTCTTTAATTCAGTGATAA
AATTTAAACTAAGAACAAGCCAAAAATTACAGGTTTCTTTATTTTCACTAAACAGGCAAC
TGAAATACATGGTACAAAAATAAGTGGTAAGATTATTGTAAAATGAAATGGACAGAATAA
ATATTCAATTTAATTTTCCATCTATGAGAATTTCACAATAAAATTACAGTTTACTTTGTA
TTATAGACGTGCTTGTTGGATCTATTCATCCTCACATAAGGCAACTGAAAAATTCCTCAA
GTTACCAACAGTTATTTGGGTGAAGTTTTCTTTGATGCTTCAAATGGTTTGGGTTTTTTT
TGCCTTATCAATTCAGTATAATGGGGGAAAGAATCTGGAAACTATTTTTTAAAGTAGATG
ATACAAATGTTAAACAATGTGATGCACTTCCCTTTTATAAACTGTCAGCTTATTCTTGGT
GAATCATCAAAAAACATAAATTTAAGATGTAAGCATATTCACATAATGACTTACTTAGTT
TTGAAAATTCTAGTGTTCTTTCCCAGTGGCAACTGAGACTAGGGCTTACTGCAAGACGCT
TCAGCATGCTTCACTATTTGCTATTATGAACTTGCCAATAAATGCAGTTTTGAAACTATA
TATATTCCCATTCCTACCCCCATTTTCAAGTACAGACATTTCAAGCTACTGTGGGCATTA
ATAATCTGTTCACTCGGGGAGGAAATTATTGCTTATCTTACTTCAAATGTAAGTGGCTGC
CATGAATTAATCAGCTTACGGAAGTGGAGTGTTCTAAACCTAAGCAGTCACAATCTCTGG
GAAATCCTTGCAGAATGATAGCCATTCTGGTCTGAGCAGTAAGTAATCCCTGTTCTTTGA
CCCTGGACCAAAATTTCCTTCAGCATACACGTTGCCATTGGAGCATATTTTACATCAGCC
CTTCTTTATGTTCCCATCTAAGCTTCAAAATGGCCCTGTATTGACACCACATGGGGCTCC
ACAAGAACCCAGGTTTTCAAACTGCCAATCCAGCTGCAGTACTGCCACTTTCCTATGGAG
TTAATTTCTACTAATTCGGGGGGACTACTAGGAAGTTGTATTACAGGTAAACTTGGGATT
TCATAACCACACGTTATGTCACTACAAGTCACTGCTGTTCTAAGGCTAAATATGTACCAC
AGTGAATCTAACTTGGCCAGGCCTGCTTATGGAATGCTCCTGGCAGTATCTTCCTAGGTG
GAGACAGTTTGAGTTTCAAGGGAGGTTTTAAACTTCTAAAGATATCATTAACAGTTGTGT
TGATACTCTTCATGGCATTCACAACGAGCTAAAGTA
|
|
gi|55595961|ref|XP_515516.1| |
Protein identifier
|
gi|55595961|ref|XP_515516.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
mgp (2.76817) |
|
rec (2.24991) |
|
mga (2.24287) |
|
mgm (1.80343) |
|
liv (1.75541) |
|
vin (1.66279) |
|
fco (1.57208) |
|
lyg (1.46413) |
|
lin (1.45603) |
|
gul (1.42071) |
|
tra (1.35401) |
|
isp (1.20301) |
|
ski (1.17388) |
|
kid (1.16762) |
|
ret (1.1586) |
|
sin (1.04969) |
|
cbe (0.956938) |
|
fat (0.884564) |
|
fty (0.879198) |
|
tes (0.831255) |
|
aor (0.781097) |
|
ova (0.774793) |
|
bla (0.621736) |
|
lun (0.601956) |
|
bfe (0.599431) |
|
nlu (0.575043) |
|
spc (0.566829) |
|
sug (0.509165) |
|
tbr (0.462535) |
|
nms (0.427716) |
|
cty (0.41632) |
|
nep (0.36785) |
|
sag (0.36543) |
|
ill (0.351185) |
|
duo (0.345602) |
|
cut (0.339847) |
|
nje (0.33184) |
|
jej (0.296765) |
|
eje (0.296501) |
|
hyp (0.285673) |
|
cst (0.280073) |
|
fce (0.271592) |
|
ssp (0.271039) |
|
pla (0.267344) |
|
nmm (0.265604) |
|
thg (0.253582) |
|
eru (0.240096) |
|
mas (0.210305) |
|
hea (0.204499) |
|
fli (0.202881) |
|
col (0.195008) |
|
ldo (0.194005) |
|
sto (0.179824) |
|
eye (0.170503) |
|
nco (0.161734) |
|
csp (0.161186) |
|
cag (0.151194) |
|
spl (0.143184) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
nca (0.136874) |
|
che (0.136314) |
|
ste (0.135208) |
|
ute (0.132784) |
|
ese (0.126502) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
cbl (0.114797) |
|
mgp (2.76817) |
|
rec (2.24991) |
|
mga (2.24287) |
|
mgm (1.80343) |
|
liv (1.75541) |
|
vin (1.66279) |
|
fco (1.57208) |
|
lyg (1.46413) |
|
lin (1.45603) |
|
gul (1.42071) |
|
tra (1.35401) |
|
isp (1.20301) |
|
ski (1.17388) |
|
kid (1.16762) |
|
ret (1.1586) |
|
sin (1.04969) |
|
cbe (0.956938) |
|
fat (0.884564) |
|
fty (0.879198) |
|
tes (0.831255) |
|
aor (0.781097) |
|
ova (0.774793) |
|
bla (0.621736) |
|
lun (0.601956) |
|
bfe (0.599431) |
|
nlu (0.575043) |
|
spc (0.566829) |
|
sug (0.509165) |
|
tbr (0.462535) |
|
nms (0.427716) |
|
cty (0.41632) |
|
nep (0.36785) |
|
sag (0.36543) |
|
ill (0.351185) |
|
duo (0.345602) |
|
cut (0.339847) |
|
nje (0.33184) |
|
jej (0.296765) |
|
eje (0.296501) |
|
hyp (0.285673) |
|
cst (0.280073) |
|
fce (0.271592) |
|
ssp (0.271039) |
|
pla (0.267344) |
|
nmm (0.265604) |
|
thg (0.253582) |
|
eru (0.240096) |
|
mas (0.210305) |
|
hea (0.204499) |
|
fli (0.202881) |
|
col (0.195008) |
|
ldo (0.194005) |
|
sto (0.179824) |
|
eye (0.170503) |
|
nco (0.161734) |
|
csp (0.161186) |
|
cag (0.151194) |
|
spl (0.143184) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
nca (0.136874) |
|
che (0.136314) |
|
ste (0.135208) |
|
ute (0.132784) |
|
ese (0.126502) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
cbl (0.114797) |