Ss1.1-Utr1-UTR010053B07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCGTCGCTGTTGCCGCCGCCATACGCCTTCGCCTTGTTCAGCTCTTCTGTCAGAAACTA GTATTTCTTTTCCTCTCCTGTTCCTCGAGCCTCCACTCTCCCCTGTCTTATTCTGTGTGA ACCCAGCCGGAGACGCCTCCCCTTCTCCCCCTGCCGGCCCAGTTATGGCAGAGAACGATG TGGACAATGAGCTCTTGGATTATGAAGACGATGAGGTGGAGACAGCAGCTGGGGGAGATG GGGCTGAGGCCCCTGCCAAGAAGGATGTCAAGGGCTCCTATGTCTCCATCCACAGCTCTG GCTTTCGTGACTTCCTGCTCAAGCCAGAGTTGCTCCGGGCCATTGTTGACTGTGGCTTTG AGCATCCATCAGAAGTTCAGCATGAATGCATCCCTCAGGCCATCCTGGGAATGGATGTCC TATGCCAGGCCAAGTCAGGCATGGGGAAGACAGCGGTGTTTGTGCTGGCTACACTGCAAC AGCTGGAGCCAGTTACTGGGCAGGTGTCTGTACTGGTGATGTGTCACACTCGGGAGTTGG CTTTTCAGATCAGCAAGGAGTATGAGCGCTTCTCTAAATACATGCCCAATGTCAAGGTCG CAGTGTTTTTTGGTGGTCTGTCTATCAAGAAGGATGAAGAGGTGCTGAAGAAGAACTGCC CGCATATTGTCGTGGGGACCCCTGGCCGCATCCTAGCCCTGGCTCGAAATAAGAGCCTCA ACCTCAAACACATTAAACACTTTATCTTGGATGAATGTGACAAGATGCTTGAACAACTCG ACATGCGTCGGGATGTCCAGGAAATTTTTCGCATGACCCCCCACGAGAAGCAGGTCATGA TGTTCAGTGCTACCTTGAGCAAAGAGATTCGTCCAGTCTGCCGCAAGTTCATGCAAGACC CAATGGAGATCTTCGTGGATGATGAGACGAAGCTGACGCTGCATGGGTTGCAGCAGTACT ACGTGAAACTGAAGGACAACGAGAAGAACCGGAAGCTCTTTGATCTTCTGGATGTCCTTG AGTTCAACCAGGTGGTGATATTTGTGAAGTCTGTGCAGCGCTGCATTGCCCTGGCCCAGC TCCTGGTGGAGCAGAACTTCCCAGCCATTGCCATCCACCGTGGGATGCCCCAGGAGGAGA GGCTTTCTCGGTATCAGCAGTTTAAAGATTTTCAACGACGAATTCTTGTGGCTACCAACC TGTTTGGCCGAGGCATGGACATCGAGCGGGTGAACATTGCCTTCAACTACGACATGCCTG AGGATTCTGACACCTACTTGCATCGGGTGGCCAGAGCCGGCCGATTTGGCACCAAGGGCT TGGCCATCACATTTGTGTCAGATGAGAATGATGCCAAGATCCTCAATGACGTGCAGGATC GCTTTGAAGTCAATATTAGTGAGCTGCCTGACGAGATAGACATTTCCTCCTACATTGAAC AGACGCGGTAGAGGACTCACCCACCATTCGGGAATGAGAAAGTCTATCCCTCTGCAGGAG ATGACACCAAGCATGGGGGTGAAGGAGACACTACTGCCACCTACCCCTGACAACCCCTAA CCCCCAACCCATGGCTTCCCTCTTTTGCATCACCACCACTCCTAAACCCCCATTTCCCGA TTTGTCAGAAATTTTTTTAACAAAACTAAAAAACACAAGCGTCTGTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCGTCGCTGTTGCCGCCGCCATACGCCTTCGCCTTGTTCAGCTCTTCTGTCAGAAACTA GTATTTCTTTTCCTCTCCTGTTCCTCGAGCCTCCACTCTCCCCTGTCTTATTCTGTGTGA ACCCAGCCGGAGACGCCTCCCCTTCTCCCCCTGCCGGCCCAGTTATGGCAGAGAACGATG TGGACAATGAGCTCTTGGATTATGAAGACGATGAGGTGGAGACAGCAGCTGGGGGAGATG GGGCTGAGGCCCCTGCCAAGAAGGATGTCAAGGGCTCCTATGTCTCCATCCACAGCTCTG GCTTTCGTGACTTCCTGCTCAAGCCAGAGTTGCTCCGGGCCATTGTTGACTGTGGCTTTG AGCATCCATCAGAAGTTCAGCATGAATGCATCCCTCAGGCCATCCTGGGAATGGATGTCC TATGCCAGGCCAAGTCAGGCATGGGGAAGACAGCGGTGTTTGTGCTGGCTACACTGCAAC AGCTGGAGCCAGTTACTGGGCAGGTGTCTGTACTGGTGATGTGTCACACTCGGGAGTTGG CTTTTCAGATCAGCAAGGAGTATGAGCGCTTCTCTAAATACATGCCCAATGTCAAGGTCG CAGTGTTTTTTGGTGGTCTGTCTATCAAGAAGGATGAAGAGGTGCTGAAGAAGAACTGCC CGCATATTGTCGTGGGGACCCCTGGCCGCATCCTAGCCCTGGCTCGAAATAAGAGCCTCA ACCTCAAACACATTAAACACTTTATCTTGGATGAATGTGACAAGATGCTTGAACAACTCG ACATGCGTCGGGATGTCCAGGAAATTTTTCGCATGACCCCCCACGAGAAGCAGGTCATGA TGTTCAGTGCTACCTTGAGCAAAGAGATTCGTCCAGTCTGCCGCAAGTTCATGCAAGACC CAATGGAGATCTTCGTGGATGATGAGACGAAGCTGACGCTGCATGGGTTGCAGCAGTACT ACGTGAAACTGAAGGACAACGAGAAGAACCGGAAGCTCTTTGATCTTCTGGATGTCCTTG AGTTCAACCAGGTGGTGATATTTGTGAAGTCTGTGCAGCGCTGCATTGCCCTGGCCCAGC TCCTGGTGGAGCAGAACTTCCCAGCCATTGCCATCCACCGTGGGATGCCCCAGGAGGAGA GGCTTTCTCGGTATCAGCAGTTTAAAGATTTTCAACGACGAATTCTTGTGGCTACCAACC TGTTTGGCCGAGGCATGGACATCGAGCGGGTGAACATTGCCTTCAACTACGACATGCCTG AGGATTCTGACACCTACTTGCATCGGGTGGCCAGAGCCGGCCGATTTGGCACCAAGGGCT TGGCCATCACATTTGTGTCAGATGAGAATGATGCCAAGATCCTCAATGACGTGCAGGATC GCTTTGAAGTCAATATTAGTGAGCTGCCTGACGAGATAGACATTTCCTCCTACATTGAAC AGACGCGGTAGAGGACTCACCCACCATTCGGGAATGAGAAAGTCTATCCCTCTGCAGGAG ATGACACCAAGCATGGGGGTGAAGGAGACACTACTGCCACCTACCCCTGACAACCCCTAA CCCCCAACCCATGGCTTCCCTCTTTTGCATCACCACCACTCCTAAACCCCCATTTCCCGA TTTGTCAGAAATTTTTTTAACAAAACTAAAAAACACAAGCGTCTGTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 188-1404, + strand, RNAz p=0.98101 | |
| 916-1033, + strand, RNAz p=0.989779 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 188-1404, + strand, RNAz p=0.98101 | |
| 916-1033, + strand, RNAz p=0.989779 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_004640, + |
| Aligned organism(s): 70 entry(ies) | More info |
| Aligned organism(s): 70 entry(ies) | Help | Less info |
| 40-375, gnl|bosTau2|chr23 (23211144-23210801) | |
| 40-375, gnl|Hg17|chr6 (31616423-31616078) | |
| 40-375, gnl|Mm7|chr17 (33339275-33339615) | |
| 595-780, gnl|bosTau2|chr23 (23207253-23207068) | |
| 595-780, gnl|canFam2|chr12 (4041162-4041279) | |
| 595-780, gnl|danRer3|chrUn (147738432-147738315) | |
| 595-780, gnl|dasNov1|scaffold_112098 (385-268) | |
| 595-780, gnl|echTel1|scaffold_89309 (409-527) | |
| 595-780, gnl|fr1|chrUn (243509611-243509494) | |
| 595-780, gnl|hg17|chr11 (119198010-119198127) | |
| 595-780, gnl|Hg17|chr6 (31612441-31612256) | |
| 595-780, gnl|mm7|chr17 (33343289-33343172) | |
| 595-780, gnl|Mm7|chr17 (33343103-33343288) | |
| 595-780, gnl|monDom2|scaffold_8 (85037332-85037215) | |
| 595-780, gnl|oryCun1|scaffold_86343 (436-546) | |
| 595-780, gnl|panTro1|chr9 (121219534-121219653) | |
| 595-780, gnl|rheMac2|chr14 (118234933-118235050) | |
| 595-780, gnl|rn3|chr20 (3617727-3617844) | |
| 595-780, gnl|xenTro1|scaffold_115 (571377-571263) | |
| 900-1033, gnl|bosTau2|chr23 (23203613-23203480) | |
| 900-1033, gnl|canFam2|chr12 (4037522-4037649) | |
| 900-1033, gnl|canFam2|chr12 (4037511-4037651) | |
| 900-1033, gnl|danRer3|chr10 (19166302-19166442) | |
| 900-1033, gnl|danRer3|chrUn (147740904-147740776) | |
| 900-1033, gnl|dasNov1|scaffold_112098 (3692-3564) | |
| 900-1033, gnl|dasNov1|scaffold_112098 (3702-3562) | |
| 900-1033, gnl|echTel1|scaffold_89309 (163-291) | |
| 900-1033, gnl|echTel1|scaffold_89309 (158-291) | |
| 900-1033, gnl|fr1|chrUn (243510528-243510400) | |
| 900-1033, gnl|fr1|chrUn (243510538-243510398) | |
| 900-1033, gnl|hg17|chr11 (119197761-119197889) | |
| 900-1033, gnl|hg17|chr6 (31608530-31608670) | |
| 900-1033, gnl|Hg17|chr6 (31608667-31608534) | |
| 900-1033, gnl|loxAfr1|scaffold_44913 (12070-12197) | |
| 900-1033, gnl|loxAfr1|scaffold_44913 (12060-12199) | |
| 900-1033, gnl|mm7|chr17 (33347514-33347386) | |
| 900-1033, gnl|mm7|chr17 (33347524-33347384) | |
| 900-1033, gnl|Mm7|chr17 (33347385-33347518) | |
| 900-1033, gnl|monDom2|scaffold_42 (17948347-17948207) | |
| 900-1033, gnl|monDom2|scaffold_8 (85037580-85037452) | |
| 900-1033, gnl|oryCun1|scaffold_125979 (1338-1199) | |
| 900-1033, gnl|oryCun1|scaffold_86343 (189-316) | |
| 900-1033, gnl|panTro1|chr5_random (24021469-24021609) | |
| 900-1033, gnl|panTro1|chr9 (121218966-121219084) | |
| 900-1033, gnl|rheMac2|chr14 (118234684-118234812) | |
| 900-1033, gnl|rheMac2|chr4 (31167168-31167308) | |
| 900-1033, gnl|rn3|chr20 (3613457-3613585) | |
| 900-1033, gnl|rn3|chr20 (3613447-3613587) | |
| 900-1033, gnl|xenTro1|scaffold_115 (572455-572327) | |
| 900-1033, gnl|xenTro1|scaffold_115 (572464-572327) | |
| 1036-1142, gnl|bosTau2|chr23 (23116107-23116001) | |
| 1036-1142, gnl|Hg17|chr6 (31607157-31607051) | |
| 1036-1142, gnl|Mm7|chr8 (82300880-82300986) | |
| 1286-1438, gnl|bosTau2|chr23 (23202291-23202139) | |
| 1286-1438, gnl|canFam2|chr12 (4036285-4036107) | |
| 1286-1438, gnl|danRer3|chrUn (147741614-147741765) | |
| 1286-1438, gnl|dasNov1|scaffold_112098 (6388-6566) | |
| 1286-1438, gnl|echTel1|scaffold_233638 (3258-3104) | |
| 1286-1438, gnl|fr1|chrUn (243511147-243511337) | |
| 1286-1438, gnl|hg17|chr6 (29982515-29982675) | |
| 1286-1438, gnl|Hg17|chr6 (31606683-31606531) | |
| 1286-1438, gnl|loxAfr1|scaffold_44913 (9314-9135) | |
| 1286-1438, gnl|mm7|chr17 (33349325-33349500) | |
| 1286-1438, gnl|Mm7|chr17 (33349345-33349497) | |
| 1286-1438, gnl|monDom2|scaffold_42 (17949501-17949682) | |
| 1286-1438, gnl|oryCun1|scaffold_125979 (3584-3780) | |
| 1286-1438, gnl|panTro1|chr5 (30553135-30553296) | |
| 1286-1438, gnl|rheMac2|chr4 (29504910-29505063) | |
| 1286-1438, gnl|rn3|chr20 (3611859-3611684) | |
| 1286-1438, gnl|xenTro1|scaffold_115 (573892-574069) |
| Aligned organism(s): 70 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 40-375, gnl|bosTau2|chr23 (23211144-23210801) | |
| 40-375, gnl|Hg17|chr6 (31616423-31616078) | |
| 40-375, gnl|Mm7|chr17 (33339275-33339615) | |
| 595-780, gnl|bosTau2|chr23 (23207253-23207068) | |
| 595-780, gnl|canFam2|chr12 (4041162-4041279) | |
| 595-780, gnl|danRer3|chrUn (147738432-147738315) | |
| 595-780, gnl|dasNov1|scaffold_112098 (385-268) | |
| 595-780, gnl|echTel1|scaffold_89309 (409-527) | |
| 595-780, gnl|fr1|chrUn (243509611-243509494) | |
| 595-780, gnl|hg17|chr11 (119198010-119198127) | |
| 595-780, gnl|Hg17|chr6 (31612441-31612256) | |
| 595-780, gnl|mm7|chr17 (33343289-33343172) | |
| 595-780, gnl|Mm7|chr17 (33343103-33343288) | |
| 595-780, gnl|monDom2|scaffold_8 (85037332-85037215) | |
| 595-780, gnl|oryCun1|scaffold_86343 (436-546) | |
| 595-780, gnl|panTro1|chr9 (121219534-121219653) | |
| 595-780, gnl|rheMac2|chr14 (118234933-118235050) | |
| 595-780, gnl|rn3|chr20 (3617727-3617844) | |
| 595-780, gnl|xenTro1|scaffold_115 (571377-571263) | |
| 900-1033, gnl|bosTau2|chr23 (23203613-23203480) | |
| 900-1033, gnl|canFam2|chr12 (4037522-4037649) | |
| 900-1033, gnl|canFam2|chr12 (4037511-4037651) | |
| 900-1033, gnl|danRer3|chr10 (19166302-19166442) | |
| 900-1033, gnl|danRer3|chrUn (147740904-147740776) | |
| 900-1033, gnl|dasNov1|scaffold_112098 (3692-3564) | |
| 900-1033, gnl|dasNov1|scaffold_112098 (3702-3562) | |
| 900-1033, gnl|echTel1|scaffold_89309 (163-291) | |
| 900-1033, gnl|echTel1|scaffold_89309 (158-291) | |
| 900-1033, gnl|fr1|chrUn (243510528-243510400) | |
| 900-1033, gnl|fr1|chrUn (243510538-243510398) | |
| 900-1033, gnl|hg17|chr11 (119197761-119197889) | |
| 900-1033, gnl|hg17|chr6 (31608530-31608670) | |
| 900-1033, gnl|Hg17|chr6 (31608667-31608534) | |
| 900-1033, gnl|loxAfr1|scaffold_44913 (12070-12197) | |
| 900-1033, gnl|loxAfr1|scaffold_44913 (12060-12199) | |
| 900-1033, gnl|mm7|chr17 (33347514-33347386) | |
| 900-1033, gnl|mm7|chr17 (33347524-33347384) | |
| 900-1033, gnl|Mm7|chr17 (33347385-33347518) | |
| 900-1033, gnl|monDom2|scaffold_42 (17948347-17948207) | |
| 900-1033, gnl|monDom2|scaffold_8 (85037580-85037452) | |
| 900-1033, gnl|oryCun1|scaffold_125979 (1338-1199) | |
| 900-1033, gnl|oryCun1|scaffold_86343 (189-316) | |
| 900-1033, gnl|panTro1|chr5_random (24021469-24021609) | |
| 900-1033, gnl|panTro1|chr9 (121218966-121219084) | |
| 900-1033, gnl|rheMac2|chr14 (118234684-118234812) | |
| 900-1033, gnl|rheMac2|chr4 (31167168-31167308) | |
| 900-1033, gnl|rn3|chr20 (3613457-3613585) | |
| 900-1033, gnl|rn3|chr20 (3613447-3613587) | |
| 900-1033, gnl|xenTro1|scaffold_115 (572455-572327) | |
| 900-1033, gnl|xenTro1|scaffold_115 (572464-572327) | |
| 1036-1142, gnl|bosTau2|chr23 (23116107-23116001) | |
| 1036-1142, gnl|Hg17|chr6 (31607157-31607051) | |
| 1036-1142, gnl|Mm7|chr8 (82300880-82300986) | |
| 1286-1438, gnl|bosTau2|chr23 (23202291-23202139) | |
| 1286-1438, gnl|canFam2|chr12 (4036285-4036107) | |
| 1286-1438, gnl|danRer3|chrUn (147741614-147741765) | |
| 1286-1438, gnl|dasNov1|scaffold_112098 (6388-6566) | |
| 1286-1438, gnl|echTel1|scaffold_233638 (3258-3104) | |
| 1286-1438, gnl|fr1|chrUn (243511147-243511337) | |
| 1286-1438, gnl|hg17|chr6 (29982515-29982675) | |
| 1286-1438, gnl|Hg17|chr6 (31606683-31606531) | |
| 1286-1438, gnl|loxAfr1|scaffold_44913 (9314-9135) | |
| 1286-1438, gnl|mm7|chr17 (33349325-33349500) | |
| 1286-1438, gnl|Mm7|chr17 (33349345-33349497) | |
| 1286-1438, gnl|monDom2|scaffold_42 (17949501-17949682) | |
| 1286-1438, gnl|oryCun1|scaffold_125979 (3584-3780) | |
| 1286-1438, gnl|panTro1|chr5 (30553135-30553296) | |
| 1286-1438, gnl|rheMac2|chr4 (29504910-29505063) | |
| 1286-1438, gnl|rn3|chr20 (3611859-3611684) | |
| 1286-1438, gnl|xenTro1|scaffold_115 (573892-574069) |
| Expressed library(ies): 48 entry(ies) | More info |
| Expressed library(ies): 48 entry(ies) | Help | Less info |
| ecc (0.805246) | |
| csp (0.644745) | |
| eep (0.61282) | |
| fcc (0.593354) | |
| col (0.585023) | |
| lnt (0.569233) | |
| hlv (0.557025) | |
| fty (0.527519) | |
| ton (0.526501) | |
| thg (0.507164) | |
| ece (0.45861) | |
| eli (0.455443) | |
| cag (0.453583) | |
| amn (0.417711) | |
| hea (0.408998) | |
| nlu (0.383362) | |
| clu (0.358938) | |
| ill (0.351185) | |
| fbs (0.350693) | |
| sin (0.349895) | |
| eye (0.341006) | |
| fhi (0.339155) | |
| nbm (0.297974) | |
| hyp (0.285673) | |
| pty (0.285429) | |
| cst (0.280073) | |
| che (0.272628) | |
| fce (0.271592) | |
| ese (0.253004) | |
| pgl (0.236967) | |
| mas (0.210305) | |
| tes (0.207814) | |
| jej (0.197844) | |
| eje (0.197668) | |
| cut (0.169924) | |
| cje (0.165235) | |
| cki (0.165235) | |
| lun (0.150489) | |
| isp (0.150376) | |
| fat (0.147427) | |
| csk (0.140746) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| cly (0.120642) | |
| spc (0.113366) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 48 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.805246) | |
| csp (0.644745) | |
| eep (0.61282) | |
| fcc (0.593354) | |
| col (0.585023) | |
| lnt (0.569233) | |
| hlv (0.557025) | |
| fty (0.527519) | |
| ton (0.526501) | |
| thg (0.507164) | |
| ece (0.45861) | |
| eli (0.455443) | |
| cag (0.453583) | |
| amn (0.417711) | |
| hea (0.408998) | |
| nlu (0.383362) | |
| clu (0.358938) | |
| ill (0.351185) | |
| fbs (0.350693) | |
| sin (0.349895) | |
| eye (0.341006) | |
| fhi (0.339155) | |
| nbm (0.297974) | |
| hyp (0.285673) | |
| pty (0.285429) | |
| cst (0.280073) | |
| che (0.272628) | |
| fce (0.271592) | |
| ese (0.253004) | |
| pgl (0.236967) | |
| mas (0.210305) | |
| tes (0.207814) | |
| jej (0.197844) | |
| eje (0.197668) | |
| cut (0.169924) | |
| cje (0.165235) | |
| cki (0.165235) | |
| lun (0.150489) | |
| isp (0.150376) | |
| fat (0.147427) | |
| csk (0.140746) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| cly (0.120642) | |
| spc (0.113366) | |
| cty (0.10408) | |
| ldo (0.0970026) |