Non-Coding RNA Search

Ss1.1-Utr1-UTR010053D07.5

Sequence:


               
               GCGGCGGCGGCGGCGGCGGCGGCTGTGGTGAAGCAGGAGGAGGAGCCGACAGGCGCTGGC
ACCGAGGCCTGACCATGGACGAGGAATACGATGTGATCGTGCTGGGGACCGGCCTCACCG
AATGCATCCTGTCGGGGATCATGTCTGTGAACGGCAAGAAGGTGCTGCACATGGACCGGA
ACCCCTACTATGGCGGCGAGAGCTCCTCCATCACACCCCTGGAGGAGCTCTATAAGCGTT
TTCAGTTGCTGGAGGGGCCCCCCGAGGCCATGGGCCGTGGCCGAGACTGGAACGTTGACT
TGATCCCCAAATTCCTCATGGCCAATGGGCAGCTGGTGAAGATGCTGCTGTACACGGAGG
TGACGCGCTATCTGGACTTCAAGGTGGTGGAGGGCAGCTTTGTCTACAAGGGGGGCAAGA
TCTACAAGGTGCCGTCCACCGAGACTGAAGCTCTGGCTTCCAATCTGATGGGCATGTTTG
AGAAGCGGCGCTTCCGCAAGTTCCTGGTGTTTGTGGCAAACTTCGATGAGAACGACCCCA
AGACCTTCGAGGGCGTCGACCCCCAGAGCACCAGCATGCGGGACGTCTACCGGAAGTTCG
ACTTGGGCCAGGATGTCATCGACTTCACTGGCCACGCCCTGGCGCTCTACCGCACTGATG
ACTACCTGGACCAGCCCTGTCTTGAGACCATCAACCGCATCAAGCTGTACAGCGAGTCCC
TGGCCCGCTATGGCAAGAGCCCCTATCTGTACCCACTCTACGGCCTTGGAGAGCTGCCCC
AAGGCTTTGCGAGACTGAGCGCCATCTACGGGGGCACGTACATGCTGAACAAGCCCGTGG
ACGACATCATCATGGAGAACGGCAAGGTGGTGGGCGTGAAGTCCGAGGGAGAGGTGGCCC
GCTGCAAGCAGCTGATCTGCGATCCCAGCTACGTCCCAGACCGTGTGCGGAAGGCCGGCC
AGGTCATCCGTATCATCTGCATCCTCAGCCACCCCATCAAGAACACGAACGACGCCAACT
CCTGCCAGATCATCATCCCCCAGAACCAGGTCAACAGGAAGTCAGACATCTACGTGTGCA
TGATCTCCTACGCGCACAACGTGGCCGCGCAGGGCAAGTACATCGCCATCGCCAGCACCA
CCGTGGAGACCGCGGAGCCCGAAAAGGAGGTCGAGCCGGCCCTGGAGCTGCTGGAGCCCA
TTGACCAGAAGTTCGTGGCCATCAGTGACTTGTACGAGCCCGTCGATGATGGTTCTGAGA
GCCAGGTGTTCTGCTCCTGCTCTTACGACGCCACCACACACTTCGAGACCACCTGTAACG
ACATCAAAGACATCTACAAGCGCATGGTGGGCTCCGCTTTCGACTTCGAGAACATGAAGC
GCAAACAGAACGATGTCTTCGGAGAAGCTGACCAGTGATTGCTGACCCCGGCCCCAGCCC
CCGGTGCCCTCTCCCCCGGCCCAAGTCTGTTCTCCTCAAGGGCTGGGGAGAAGGGCGAGC
TGGGCACCCCTGTTTCCAGCATCCTTTGCTTACCCCACCACACTCCTGTCACCCACCTCA
TTGATTCACTGACCAAATCCTTAACCTTAGTGACGGTTGGGAGATGGGGGGTGGGTTAGT
ATCCTCTTTCTTGGCCCTTCCTTATCCTGGGGAAAGAGGCTCCTCTCCTTGTGTGCGTTT
CTCCCCCCGCCCCTCATTCTTCTGCTCTGTTTGGGAAGGACGTGGAGGAAAAGCTGACTT
CTGCCCCCACCGCTCTTAACCCCCGTTTGTAGTGGCCTTTGGAGATGCCCCCCGCCTCCC
CCCACAGCTCTCGCGTGTTGGAGAGAAGGGGCCCTCCCAGCACAAAGTTGCATTCCTCTC
CCTACCCCACCCGCGTAATTTATTCTAATTTATTAACTTCGGCCCACCTTGTCTGAGAAG
GGTGAGCTGTGCCCCTGCCCCACAGACTTGTGTGGCCTGGGCTGTGGAGCAGCTACCCTA
GCCTGGCTCTCCTGACCTTGGTGGCTCTGGTGCAGCCTGGGAAGGGAGAGGGCTTGGGTG
TGGCCCCGTTGGAGGTTGGTCATGTTTTTCTTTCTTGTCTTTGTGTCCACTGGTACTTGC
TGAGAGAGAAAAGAAATGGGAGCAAAGCAGAAGGAGGTGGGAAAATGGATCCATACCCCG
CGTGCCCGCCCGCCCTGTCCCCTTCCCTTAGTGGTGGGAAACCCTTATCTTGCAAAGTGA
ATGTGTCCCCTTCCCCAGCCTCTAGTGTATTTCACAGAAAACAAAACCTCCCAATAAAAC
TGTGTTGAAACCTCGAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCGGCGGCGGCGGCGGCGGCTGTGGTGAAGCAGGAGGAGGAGCCGACAGGCGCTGGC
ACCGAGGCCTGACCATGGACGAGGAATACGATGTGATCGTGCTGGGGACCGGCCTCACCG
AATGCATCCTGTCGGGGATCATGTCTGTGAACGGCAAGAAGGTGCTGCACATGGACCGGA
ACCCCTACTATGGCGGCGAGAGCTCCTCCATCACACCCCTGGAGGAGCTCTATAAGCGTT
TTCAGTTGCTGGAGGGGCCCCCCGAGGCCATGGGCCGTGGCCGAGACTGGAACGTTGACT
TGATCCCCAAATTCCTCATGGCCAATGGGCAGCTGGTGAAGATGCTGCTGTACACGGAGG
TGACGCGCTATCTGGACTTCAAGGTGGTGGAGGGCAGCTTTGTCTACAAGGGGGGCAAGA
TCTACAAGGTGCCGTCCACCGAGACTGAAGCTCTGGCTTCCAATCTGATGGGCATGTTTG
AGAAGCGGCGCTTCCGCAAGTTCCTGGTGTTTGTGGCAAACTTCGATGAGAACGACCCCA
AGACCTTCGAGGGCGTCGACCCCCAGAGCACCAGCATGCGGGACGTCTACCGGAAGTTCG
ACTTGGGCCAGGATGTCATCGACTTCACTGGCCACGCCCTGGCGCTCTACCGCACTGATG
ACTACCTGGACCAGCCCTGTCTTGAGACCATCAACCGCATCAAGCTGTACAGCGAGTCCC
TGGCCCGCTATGGCAAGAGCCCCTATCTGTACCCACTCTACGGCCTTGGAGAGCTGCCCC
AAGGCTTTGCGAGACTGAGCGCCATCTACGGGGGCACGTACATGCTGAACAAGCCCGTGG
ACGACATCATCATGGAGAACGGCAAGGTGGTGGGCGTGAAGTCCGAGGGAGAGGTGGCCC
GCTGCAAGCAGCTGATCTGCGATCCCAGCTACGTCCCAGACCGTGTGCGGAAGGCCGGCC
AGGTCATCCGTATCATCTGCATCCTCAGCCACCCCATCAAGAACACGAACGACGCCAACT
CCTGCCAGATCATCATCCCCCAGAACCAGGTCAACAGGAAGTCAGACATCTACGTGTGCA
TGATCTCCTACGCGCACAACGTGGCCGCGCAGGGCAAGTACATCGCCATCGCCAGCACCA
CCGTGGAGACCGCGGAGCCCGAAAAGGAGGTCGAGCCGGCCCTGGAGCTGCTGGAGCCCA
TTGACCAGAAGTTCGTGGCCATCAGTGACTTGTACGAGCCCGTCGATGATGGTTCTGAGA
GCCAGGTGTTCTGCTCCTGCTCTTACGACGCCACCACACACTTCGAGACCACCTGTAACG
ACATCAAAGACATCTACAAGCGCATGGTGGGCTCCGCTTTCGACTTCGAGAACATGAAGC
GCAAACAGAACGATGTCTTCGGAGAAGCTGACCAGTGATTGCTGACCCCGGCCCCAGCCC
CCGGTGCCCTCTCCCCCGGCCCAAGTCTGTTCTCCTCAAGGGCTGGGGAGAAGGGCGAGC
TGGGCACCCCTGTTTCCAGCATCCTTTGCTTACCCCACCACACTCCTGTCACCCACCTCA
TTGATTCACTGACCAAATCCTTAACCTTAGTGACGGTTGGGAGATGGGGGGTGGGTTAGT
ATCCTCTTTCTTGGCCCTTCCTTATCCTGGGGAAAGAGGCTCCTCTCCTTGTGTGCGTTT
CTCCCCCCGCCCCTCATTCTTCTGCTCTGTTTGGGAAGGACGTGGAGGAAAAGCTGACTT
CTGCCCCCACCGCTCTTAACCCCCGTTTGTAGTGGCCTTTGGAGATGCCCCCCGCCTCCC
CCCACAGCTCTCGCGTGTTGGAGAGAAGGGGCCCTCCCAGCACAAAGTTGCATTCCTCTC
CCTACCCCACCCGCGTAATTTATTCTAATTTATTAACTTCGGCCCACCTTGTCTGAGAAG
GGTGAGCTGTGCCCCTGCCCCACAGACTTGTGTGGCCTGGGCTGTGGAGCAGCTACCCTA
GCCTGGCTCTCCTGACCTTGGTGGCTCTGGTGCAGCCTGGGAAGGGAGAGGGCTTGGGTG
TGGCCCCGTTGGAGGTTGGTCATGTTTTTCTTTCTTGTCTTTGTGTCCACTGGTACTTGC
TGAGAGAGAAAAGAAATGGGAGCAAAGCAGAAGGAGGTGGGAAAATGGATCCATACCCCG
CGTGCCCGCCCGCCCTGTCCCCTTCCCTTAGTGGTGGGAAACCCTTATCTTGCAAAGTGA
ATGTGTCCCCTTCCCCAGCCTCTAGTGTATTTCACAGAAAACAAAACCTCCCAATAAAAC
TGTGTTGAAACCTCGAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               GDIA_CANFA

Coded protein: 1 entry(ies)

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Protein identifier


               
               GDIA_CANFA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               120-1407, gnl|bosTau2|chr13 (28658241-28656967)
               

               
               120-1407, gnl|Hg17|chr7 (48720703-48719418)
               

               
               120-1407, gnl|Mm7|chr7 (121643872-121645155)
               


               
               2024-2304, gnl|bosTau2|chr4 (63585513-63585807)
               

               
               2024-2304, gnl|Hg17|chrX (153235245-153235518)
               

               
               2024-2304, gnl|Mm7|chr2 (165406540-165406269)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               120-1407, gnl|bosTau2|chr13 (28658241-28656967)
               

               
               120-1407, gnl|Hg17|chr7 (48720703-48719418)
               

               
               120-1407, gnl|Mm7|chr7 (121643872-121645155)
               


               
               2024-2304, gnl|bosTau2|chr4 (63585513-63585807)
               

               
               2024-2304, gnl|Hg17|chrX (153235245-153235518)
               

               
               2024-2304, gnl|Mm7|chr2 (165406540-165406269)

Expressed library(ies): 26 entry(ies)

More info

Expressed library(ies): 26 entry(ies)

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               cbr (2.30356)
               

               
               fcc (1.58228)
               

               
               ebs (0.828108)
               

               
               fbs (0.701385)
               

               
               ece (0.687916)
               

               
               ecc (0.575175)
               

               
               fce (0.543183)
               

               
               hyp (0.42851)
               

               
               elu (0.385356)
               

               
               pty (0.285429)
               

               
               nca (0.273748)
               

               
               ute (0.265569)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (2.30356)
               

               
               fcc (1.58228)
               

               
               ebs (0.828108)
               

               
               fbs (0.701385)
               

               
               ece (0.687916)
               

               
               ecc (0.575175)
               

               
               fce (0.543183)
               

               
               hyp (0.42851)
               

               
               elu (0.385356)
               

               
               pty (0.285429)
               

               
               nca (0.273748)
               

               
               ute (0.265569)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	120-1407, gnl\|bosTau2\|chr13 (28658241-28656967)
	120-1407, gnl\|Hg17\|chr7 (48720703-48719418)
	120-1407, gnl\|Mm7\|chr7 (121643872-121645155)

	2024-2304, gnl\|bosTau2\|chr4 (63585513-63585807)
	2024-2304, gnl\|Hg17\|chrX (153235245-153235518)
	2024-2304, gnl\|Mm7\|chr2 (165406540-165406269)

	cbr (2.30356)
	fcc (1.58228)
	ebs (0.828108)
	fbs (0.701385)
	ece (0.687916)
	ecc (0.575175)
	fce (0.543183)
	hyp (0.42851)
	elu (0.385356)
	pty (0.285429)
	nca (0.273748)
	ute (0.265569)
	ill (0.175593)
	ton (0.1755)
	eye (0.170503)
	fhi (0.169578)
	nje (0.16592)
	nco (0.161734)
	csp (0.161186)
	cov (0.132153)
	eep (0.122564)
	eru (0.120048)
	pgl (0.118483)
	jca (0.11396)
	cty (0.10408)
	jej (0.0989218)