Non-Coding RNA Search

Ss1.1-Utr1-UTR010053G06.5

Sequence:


               
               AAATATTGTTCCTAAAATAAAGGGAGCCCTACTAAGGCAAACCAGAACAAAGTAATAACA
GTGACAGTATTAACCTGTATCCTTTTGTCCTTACAGGCACTGATCTGACACAGACACAGG
TGGACAAAACAGAGGTCCTAGTAACAGATGAAAAGTGAGTTCTGGAAAACAGTAGTGACC
TTTGCTGACTTTAGTTGGATTAAAAAAAAAAAATCATTTCTCAAAAATTACTTGGGTAAA
TTAAGCTGATGATACTTGGTGCTGGTGAAGAATGCTGGCTCTTAAGTCAAGTAGACCCCA
GTTCTCAAAGTGACATTTTGCTACTTTTTTTAGTTGTGTGAGTTTGAGCAAGAAACTTAA
CATTCCTAAAGTTCAGTTTCTTTATAATTCAGGTTGTTGTGAAGATTAGATGAGACAAAG
CATGCAAAACTCAACGTTTGACATAAAATAAGTGCTTAAGCAGCGTTATTTAAAGGAAGC
AGCTTGTTTATGGACCGGAACCAGCTAGTAGTACTCTTTGAAATATATTGCTCTTACGTA
TTTAAACAGAGGTCGAGATCACAGAAAAATACCTTTCAGATTTAAGAGGAGCCTTAGTTT
CCTTTGACTTCCTGGATCTCGAAAAAAATCTATGGGAGAATTGATCCAAAAAAGATTAAA
ACTTAAAAACGATAGATATTTGGAGTTCCATGGTGGCCTAGCAGTTAAGGACTCAGCGCT
GTTGCTGCTGTGGCCTGTGGCTCAGGTTCCCTCCCTGACCCGGGAACTTTGGCATGCTGT
GGGCGAGGCCAAAAAAAAAAAAATAATTAAAAAGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATATTGTTCCTAAAATAAAGGGAGCCCTACTAAGGCAAACCAGAACAAAGTAATAACA
GTGACAGTATTAACCTGTATCCTTTTGTCCTTACAGGCACTGATCTGACACAGACACAGG
TGGACAAAACAGAGGTCCTAGTAACAGATGAAAAGTGAGTTCTGGAAAACAGTAGTGACC
TTTGCTGACTTTAGTTGGATTAAAAAAAAAAAATCATTTCTCAAAAATTACTTGGGTAAA
TTAAGCTGATGATACTTGGTGCTGGTGAAGAATGCTGGCTCTTAAGTCAAGTAGACCCCA
GTTCTCAAAGTGACATTTTGCTACTTTTTTTAGTTGTGTGAGTTTGAGCAAGAAACTTAA
CATTCCTAAAGTTCAGTTTCTTTATAATTCAGGTTGTTGTGAAGATTAGATGAGACAAAG
CATGCAAAACTCAACGTTTGACATAAAATAAGTGCTTAAGCAGCGTTATTTAAAGGAAGC
AGCTTGTTTATGGACCGGAACCAGCTAGTAGTACTCTTTGAAATATATTGCTCTTACGTA
TTTAAACAGAGGTCGAGATCACAGAAAAATACCTTTCAGATTTAAGAGGAGCCTTAGTTT
CCTTTGACTTCCTGGATCTCGAAAAAAATCTATGGGAGAATTGATCCAAAAAAGATTAAA
ACTTAAAAACGATAGATATTTGGAGTTCCATGGTGGCCTAGCAGTTAAGGACTCAGCGCT
GTTGCTGCTGTGGCCTGTGGCTCAGGTTCCCTCCCTGACCCGGGAACTTTGGCATGCTGT
GGGCGAGGCCAAAAAAAAAAAAATAATTAAAAAGAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-235, - strand, RNAz p=0.864364

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-235, - strand, RNAz p=0.864364

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-687, gnl|bosTau2|chr16 (52655814-52656481)
               

               
               1-687, gnl|Hg17|chr1 (209562201-209561540)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-687, gnl|bosTau2|chr16 (52655814-52656481)
               

               
               1-687, gnl|Hg17|chr1 (209562201-209561540)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lun (0.150489)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)

	1-687, gnl\|bosTau2\|chr16 (52655814-52656481)
	1-687, gnl\|Hg17\|chr1 (209562201-209561540)