Ss1.1-Utr1-UTR010054A11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTCGGTTGCTGGTGTCTGTGGCTGAGAGGTCCGAGGTCGGGCTGTGTCTTGGGGAGC AATGGCGACCTTTGTGAGCGAGCTGGAGGCGGCCAAGAAGAACTTGAGCGAGGCTCTGGG GGACAACGTGAAACAATACTGGGCTAACTTAAAGTTGTGGTTCAAGCAGAAGATCAGCAA AGAAGAGTTTGACCTTGAGGCTCATAGACTTCTCACACAGGATAATGTCCATTCTCACAA CGATTTCCTCCTGGCTATTCTCACACGTTGTCAGATTTTGGTGTCTACACCAGAGGGTGC TGGATCTTTGCCCTGGACAGGGGGTTCTGCAGCCAAACCTGGAAAACCAAAGGGAAAGAA GAAGCTTTCTTCTGTTCGTCAGAAATTTGATCATAGATTCCAGCCTCAAAATCCCCTCTC GGGAGCCCAGCAGTTTGTGGCAAAGGATCCCCAAGATGATGATGACTTGAAACTTTGCTC CCACACAATGATGCTTCCCACTCGGGGTCAGCTTGAAGGGAGAATGATAGTGACTGCTTA CGAGCACGGGCTGGACAACGTCACCGAGGAGGCTGTCTCAGCTGTGGTCTATGCGGTGGA GAATCACCTTAAAGATATATTGACATCAGTTGTGTCAAGAAGGAAAGCTTACCGATTACG TGATGGTCATTTTAAATATGCCTTTGGTAGTAATGTGACCCCACAGCCATACCTGAAGAA TAGTGTAGTAGCATACAACAACTTGATAGAAAGCCCTCCAGCCTTTTCTGCTCCTTGTGC TGGTCAGAATCCAGCGTCCCACCCGCCCCCTGATGATGCTGAGCAGCAGGCTGCGCTCCT GCTAGCGTGCTCGGGGGACACGCTGCCGGCATCTTTGCCTCCAGTGAACATGTACGACCT CTTTGAAGCTTTGCAGGTACACAGGGAAGTCATTCCTACACACACTGTATATGCGCTCAA CATTGAAAGGATCATCATGAAGCTCTGGCACCCAAATCACGAAGAGCTGCAGCAAGACAA AGTCCACCGCCAGCGCCTGGCAGCCAAGGAGGGTCTTTTGCTCTGCTGAAATAGGATTTG AGGGTGTGGGACTTTCAGCAAATTCATTGATTATTGGGAGTTGAATGTTTTGGGGTCTGC ATTTCAGGACTGAAGTGTATTATGTAAATATAACCTTTCCTATGGAAATGTGACAGTACA CTTTACATTGCTGCTGTGAAGCCTTTAATATAAATCTGATTTTGATAATGACCCATATAT CTCTGTATGTTTGTGTATATGTTCCCAGTTAAGGGAATAGGCACTGAGAAAATTCTGTGC CTGGAGTGGAGATGTTTAGGCATCTGAGGCTTCGTATCCTAAGGTCTGCATGCAAGGTAG GTGGCATTCTGAAACAAAGAAACTGTTAGAACTTAGTCCCCACAATCAGCAGGATGTCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTCGGTTGCTGGTGTCTGTGGCTGAGAGGTCCGAGGTCGGGCTGTGTCTTGGGGAGC AATGGCGACCTTTGTGAGCGAGCTGGAGGCGGCCAAGAAGAACTTGAGCGAGGCTCTGGG GGACAACGTGAAACAATACTGGGCTAACTTAAAGTTGTGGTTCAAGCAGAAGATCAGCAA AGAAGAGTTTGACCTTGAGGCTCATAGACTTCTCACACAGGATAATGTCCATTCTCACAA CGATTTCCTCCTGGCTATTCTCACACGTTGTCAGATTTTGGTGTCTACACCAGAGGGTGC TGGATCTTTGCCCTGGACAGGGGGTTCTGCAGCCAAACCTGGAAAACCAAAGGGAAAGAA GAAGCTTTCTTCTGTTCGTCAGAAATTTGATCATAGATTCCAGCCTCAAAATCCCCTCTC GGGAGCCCAGCAGTTTGTGGCAAAGGATCCCCAAGATGATGATGACTTGAAACTTTGCTC CCACACAATGATGCTTCCCACTCGGGGTCAGCTTGAAGGGAGAATGATAGTGACTGCTTA CGAGCACGGGCTGGACAACGTCACCGAGGAGGCTGTCTCAGCTGTGGTCTATGCGGTGGA GAATCACCTTAAAGATATATTGACATCAGTTGTGTCAAGAAGGAAAGCTTACCGATTACG TGATGGTCATTTTAAATATGCCTTTGGTAGTAATGTGACCCCACAGCCATACCTGAAGAA TAGTGTAGTAGCATACAACAACTTGATAGAAAGCCCTCCAGCCTTTTCTGCTCCTTGTGC TGGTCAGAATCCAGCGTCCCACCCGCCCCCTGATGATGCTGAGCAGCAGGCTGCGCTCCT GCTAGCGTGCTCGGGGGACACGCTGCCGGCATCTTTGCCTCCAGTGAACATGTACGACCT CTTTGAAGCTTTGCAGGTACACAGGGAAGTCATTCCTACACACACTGTATATGCGCTCAA CATTGAAAGGATCATCATGAAGCTCTGGCACCCAAATCACGAAGAGCTGCAGCAAGACAA AGTCCACCGCCAGCGCCTGGCAGCCAAGGAGGGTCTTTTGCTCTGCTGAAATAGGATTTG AGGGTGTGGGACTTTCAGCAAATTCATTGATTATTGGGAGTTGAATGTTTTGGGGTCTGC ATTTCAGGACTGAAGTGTATTATGTAAATATAACCTTTCCTATGGAAATGTGACAGTACA CTTTACATTGCTGCTGTGAAGCCTTTAATATAAATCTGATTTTGATAATGACCCATATAT CTCTGTATGTTTGTGTATATGTTCCCAGTTAAGGGAATAGGCACTGAGAAAATTCTGTGC CTGGAGTGGAGATGTTTAGGCATCTGAGGCTTCGTATCCTAAGGTCTGCATGCAAGGTAG GTGGCATTCTGAAACAAAGAAACTGTTAGAACTTAGTCCCCACAATCAGCAGGATGTCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 275-391, + strand, RNAz p=0.815452 | |
| 1227-1386, + strand, RNAz p=0.999907 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 275-391, + strand, RNAz p=0.815452 | |
| 1227-1386, + strand, RNAz p=0.999907 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_053053, + |
| Aligned organism(s): 66 entry(ies) | More info |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
| 1-138, gnl|bosTau2|chr3 (3224692-3224555) | |
| 1-138, gnl|canFam2|chr7 (34482098-34482009) | |
| 1-138, gnl|dasNov1|scaffold_10002 (1238-1149) | |
| 1-138, gnl|echTel1|scaffold_325441 (15965-16054) | |
| 1-138, gnl|fr1|chrUn (203319694-203319605) | |
| 1-138, gnl|hg17|chr1 (163577051-163577140) | |
| 1-138, gnl|Hg17|chr1 (163577189-163577052) | |
| 1-138, gnl|loxAfr1|scaffold_29829 (1398-1309) | |
| 1-138, gnl|mm7|chr1 (166350194-166350105) | |
| 1-138, gnl|Mm7|chr1 (166350051-166350191) | |
| 1-138, gnl|monDom2|scaffold_16 (17477433-17477521) | |
| 1-138, gnl|oryCun1|scaffold_83881 (3954-4043) | |
| 1-138, gnl|panTro1|chr1 (145816199-145816288) | |
| 1-138, gnl|rheMac2|chr1 (196593753-196593842) | |
| 1-138, gnl|rn3|chr13 (82125474-82125385) | |
| 1-138, gnl|tetNig1|chr15 (2872200-2872281) | |
| 275-391, gnl|bosTau2|chr3 (3215262-3215148) | |
| 275-391, gnl|canFam2|chr7 (34491061-34491136) | |
| 275-391, gnl|canFam2|chr7 (34491188-34491048) | |
| 275-391, gnl|dasNov1|scaffold_10002 (11267-11342) | |
| 275-391, gnl|dasNov1|scaffold_10002 (11391-11254) | |
| 275-391, gnl|echTel1|scaffold_325441 (9596-9521) | |
| 275-391, gnl|echTel1|scaffold_325441 (9469-9609) | |
| 275-391, gnl|fr1|chrUn (203320460-203320534) | |
| 275-391, gnl|fr1|chrUn (203320570-203320458) | |
| 275-391, gnl|hg17|chr1 (163564691-163564831) | |
| 275-391, gnl|Hg17|chr1 (163564833-163564719) | |
| 275-391, gnl|hg17|chr8 (5693858-5693933) | |
| 275-391, gnl|loxAfr1|scaffold_29829 (10723-10798) | |
| 275-391, gnl|loxAfr1|scaffold_29829 (10850-10710) | |
| 275-391, gnl|mm7|chr1 (166357378-166357453) | |
| 275-391, gnl|mm7|chr1 (166357505-166357365) | |
| 275-391, gnl|Mm7|chr1 (166357361-166357475) | |
| 275-391, gnl|monDom2|scaffold_16 (17466547-17466472) | |
| 275-391, gnl|monDom2|scaffold_16 (17466420-17466560) | |
| 275-391, gnl|oryCun1|scaffold_174948 (54360-54285) | |
| 275-391, gnl|oryCun1|scaffold_174948 (54235-54373) | |
| 275-391, gnl|panTro1|chr1 (145801906-145802046) | |
| 275-391, gnl|panTro1|chr7 (5899865-5899940) | |
| 275-391, gnl|rheMac2|chr1 (196581802-196581727) | |
| 275-391, gnl|rheMac2|chr1 (196581675-196581815) | |
| 275-391, gnl|rn3|chr13 (82133299-82133374) | |
| 275-391, gnl|rn3|chr13 (82133420-82133286) | |
| 275-391, gnl|tetNig1|chr15 (2871545-2871471) | |
| 275-391, gnl|tetNig1|chr15 (2871446-2871559) | |
| 275-391, gnl|xenTro1|scaffold_74 (370469-370339) | |
| 392-601, gnl|bosTau2|chr3 (3213641-3213432) | |
| 392-601, gnl|canFam2|chr7 (34492805-34492960) | |
| 392-601, gnl|dasNov1|scaffold_10002 (12846-13001) | |
| 392-601, gnl|echTel1|scaffold_325441 (8164-8009) | |
| 392-601, gnl|fr1|chrUn (203320665-203320823) | |
| 392-601, gnl|Hg17|chr1 (163563307-163563098) | |
| 392-601, gnl|hg17|chr8 (5693953-5694108) | |
| 392-601, gnl|loxAfr1|scaffold_29829 (15287-15442) | |
| 392-601, gnl|mm7|chr1 (166359275-166359430) | |
| 392-601, gnl|Mm7|chr1 (166359274-166359483) | |
| 392-601, gnl|monDom2|scaffold_16 (17464327-17464172) | |
| 392-601, gnl|oryCun1|scaffold_174948 (52840-52685) | |
| 392-601, gnl|panTro1|chr7 (5899960-5900115) | |
| 392-601, gnl|rheMac2|chr1 (196580292-196580137) | |
| 392-601, gnl|rn3|chr13 (82134872-82135027) | |
| 392-601, gnl|tetNig1|chr15 (2871318-2871160) | |
| 392-601, gnl|xenTro1|scaffold_74 (370969-371124) | |
| 914-1440, gnl|bosTau2|chr3 (3209701-3209178) | |
| 914-1440, gnl|Hg17|chr1 (163558617-163558098) | |
| 914-1440, gnl|Mm7|chr1 (166363277-166363771) |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-138, gnl|bosTau2|chr3 (3224692-3224555) | |
| 1-138, gnl|canFam2|chr7 (34482098-34482009) | |
| 1-138, gnl|dasNov1|scaffold_10002 (1238-1149) | |
| 1-138, gnl|echTel1|scaffold_325441 (15965-16054) | |
| 1-138, gnl|fr1|chrUn (203319694-203319605) | |
| 1-138, gnl|hg17|chr1 (163577051-163577140) | |
| 1-138, gnl|Hg17|chr1 (163577189-163577052) | |
| 1-138, gnl|loxAfr1|scaffold_29829 (1398-1309) | |
| 1-138, gnl|mm7|chr1 (166350194-166350105) | |
| 1-138, gnl|Mm7|chr1 (166350051-166350191) | |
| 1-138, gnl|monDom2|scaffold_16 (17477433-17477521) | |
| 1-138, gnl|oryCun1|scaffold_83881 (3954-4043) | |
| 1-138, gnl|panTro1|chr1 (145816199-145816288) | |
| 1-138, gnl|rheMac2|chr1 (196593753-196593842) | |
| 1-138, gnl|rn3|chr13 (82125474-82125385) | |
| 1-138, gnl|tetNig1|chr15 (2872200-2872281) | |
| 275-391, gnl|bosTau2|chr3 (3215262-3215148) | |
| 275-391, gnl|canFam2|chr7 (34491061-34491136) | |
| 275-391, gnl|canFam2|chr7 (34491188-34491048) | |
| 275-391, gnl|dasNov1|scaffold_10002 (11267-11342) | |
| 275-391, gnl|dasNov1|scaffold_10002 (11391-11254) | |
| 275-391, gnl|echTel1|scaffold_325441 (9596-9521) | |
| 275-391, gnl|echTel1|scaffold_325441 (9469-9609) | |
| 275-391, gnl|fr1|chrUn (203320460-203320534) | |
| 275-391, gnl|fr1|chrUn (203320570-203320458) | |
| 275-391, gnl|hg17|chr1 (163564691-163564831) | |
| 275-391, gnl|Hg17|chr1 (163564833-163564719) | |
| 275-391, gnl|hg17|chr8 (5693858-5693933) | |
| 275-391, gnl|loxAfr1|scaffold_29829 (10723-10798) | |
| 275-391, gnl|loxAfr1|scaffold_29829 (10850-10710) | |
| 275-391, gnl|mm7|chr1 (166357378-166357453) | |
| 275-391, gnl|mm7|chr1 (166357505-166357365) | |
| 275-391, gnl|Mm7|chr1 (166357361-166357475) | |
| 275-391, gnl|monDom2|scaffold_16 (17466547-17466472) | |
| 275-391, gnl|monDom2|scaffold_16 (17466420-17466560) | |
| 275-391, gnl|oryCun1|scaffold_174948 (54360-54285) | |
| 275-391, gnl|oryCun1|scaffold_174948 (54235-54373) | |
| 275-391, gnl|panTro1|chr1 (145801906-145802046) | |
| 275-391, gnl|panTro1|chr7 (5899865-5899940) | |
| 275-391, gnl|rheMac2|chr1 (196581802-196581727) | |
| 275-391, gnl|rheMac2|chr1 (196581675-196581815) | |
| 275-391, gnl|rn3|chr13 (82133299-82133374) | |
| 275-391, gnl|rn3|chr13 (82133420-82133286) | |
| 275-391, gnl|tetNig1|chr15 (2871545-2871471) | |
| 275-391, gnl|tetNig1|chr15 (2871446-2871559) | |
| 275-391, gnl|xenTro1|scaffold_74 (370469-370339) | |
| 392-601, gnl|bosTau2|chr3 (3213641-3213432) | |
| 392-601, gnl|canFam2|chr7 (34492805-34492960) | |
| 392-601, gnl|dasNov1|scaffold_10002 (12846-13001) | |
| 392-601, gnl|echTel1|scaffold_325441 (8164-8009) | |
| 392-601, gnl|fr1|chrUn (203320665-203320823) | |
| 392-601, gnl|Hg17|chr1 (163563307-163563098) | |
| 392-601, gnl|hg17|chr8 (5693953-5694108) | |
| 392-601, gnl|loxAfr1|scaffold_29829 (15287-15442) | |
| 392-601, gnl|mm7|chr1 (166359275-166359430) | |
| 392-601, gnl|Mm7|chr1 (166359274-166359483) | |
| 392-601, gnl|monDom2|scaffold_16 (17464327-17464172) | |
| 392-601, gnl|oryCun1|scaffold_174948 (52840-52685) | |
| 392-601, gnl|panTro1|chr7 (5899960-5900115) | |
| 392-601, gnl|rheMac2|chr1 (196580292-196580137) | |
| 392-601, gnl|rn3|chr13 (82134872-82135027) | |
| 392-601, gnl|tetNig1|chr15 (2871318-2871160) | |
| 392-601, gnl|xenTro1|scaffold_74 (370969-371124) | |
| 914-1440, gnl|bosTau2|chr3 (3209701-3209178) | |
| 914-1440, gnl|Hg17|chr1 (163558617-163558098) | |
| 914-1440, gnl|Mm7|chr1 (166363277-166363771) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| nco (0.161734) | |
| lun (0.150489) | |
| hyp (0.142837) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| ret (0.128733) | |
| eru (0.120048) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) | |
| lun (0.150489) | |
| hyp (0.142837) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| ret (0.128733) | |
| eru (0.120048) |