Ss1.1-Utr1-UTR010055B04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGATAGGAAGCCTTTTGTCACTAAGGCTGCGGTGTTGAAAATGGAAGGAAGGATGTTAGG CACATGTGCCGGCCGGGATGCAGTTACAGCCCCCACGGCTCATTGTCCAAAGGAAATGGA TCTCTCCTGCGGACAGAGAGGTGGAAACTGAGCAAGGGCGCTGAGTGGTTGACATCATCG GGCTGAGCATTGGGTTACAACAGATGGGGACTTACTTGGCCTGAGACGTGGGAAACACCC ACTAAAACCTCGAAGTGCATTTCATTTAGGAGACACAGAGAGGGAGAGAGAGGGCACGAG AGATCCTGCCTGCACCCGCTGGCCGGTCGGCTCATCTGGCTCACTGTCAGGAGGGAAGCG TTTTGAATCCTGGCTTCTGAAATTCCACCTTCCCTCTGACTGAGGACCACTGGACTCTGA AGGAACTCTGCTTTTAATTTCCACATTGATTAGTCAACGGTGGAAAATCTGAAGCGATGC GAGCAGGAAAAAGAAACTAAACCAGGCCTGCAGCGCGATGCGACGGGCATGATGGAGGTC GAGTCCTCCTACTCGGACTTCATCTCCTGTGACCGGACGGGCCGTCGGAACGCCGTTCCT GACATCCAGGGAGACTCCGAGGCCGTGAGCGTGCGGAAGCTGGCTGGTGACATGGGCGAG CTGGCCCTCGAGGGGGCAGAAGGACAGGCGGAGGGGGGCACCCCAGACAAAGAAGCAAGC AACCAGCCCCAGAGCAGCGATGGGACCACCTCCTCCTGAACGTGGCCTTGCCTGAGGCGG CTGGAAGAGACGCGCTGTGGACGGGAGCCCCGGACTGGCCGGGCAGCCTGTCCTCTGAGC AGAGTGTGCCAGGCAAGCCAGGCCCGACTGAAAGGCAGGCCCTGGAGGCTCCGGCCCCAC CAGGGGAAGGCCCTGTCCACACCCCCAGGCTCCCCGCTCCCACCTCCTCACCGCGCCGGG TGCACGTCCAGACACTCTACGCACAGGATGGTGTTTATCCAGCGGGCGCTGGGACTCAGC GGCTGGGTCCTGCCCGCCTGGGGCAGCGGTCTGGGCAGGGACCACGTCCTGGTTCTGCCC CGTCCTTTCCATCCCTGGCCTTCTGTGTCAAGACCTTCTTACCCCTTTTCTAAAAAGCAC TTTTAAACTTTTTAAAAACTTTAAACCTTTTCTCAGCAGAGAGGGAGGGAGCTGACAATT TACCTTTTTTTGGAAACCATTGTAAGCTAAACTCTTCGACCGTCTATGCAGCTCTGAGGT TCCCTCATGGAGCTTCACAGATCCATTTTTTAGGGAAGGGATTTTGTGCTCAAAACTATC TGATTAGCTGTTTGCCCTTTCTACCCAGACAAATGACACCTAGGACCCAGGAAATAAATG CAGATGATTTGTGAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGATAGGAAGCCTTTTGTCACTAAGGCTGCGGTGTTGAAAATGGAAGGAAGGATGTTAGG CACATGTGCCGGCCGGGATGCAGTTACAGCCCCCACGGCTCATTGTCCAAAGGAAATGGA TCTCTCCTGCGGACAGAGAGGTGGAAACTGAGCAAGGGCGCTGAGTGGTTGACATCATCG GGCTGAGCATTGGGTTACAACAGATGGGGACTTACTTGGCCTGAGACGTGGGAAACACCC ACTAAAACCTCGAAGTGCATTTCATTTAGGAGACACAGAGAGGGAGAGAGAGGGCACGAG AGATCCTGCCTGCACCCGCTGGCCGGTCGGCTCATCTGGCTCACTGTCAGGAGGGAAGCG TTTTGAATCCTGGCTTCTGAAATTCCACCTTCCCTCTGACTGAGGACCACTGGACTCTGA AGGAACTCTGCTTTTAATTTCCACATTGATTAGTCAACGGTGGAAAATCTGAAGCGATGC GAGCAGGAAAAAGAAACTAAACCAGGCCTGCAGCGCGATGCGACGGGCATGATGGAGGTC GAGTCCTCCTACTCGGACTTCATCTCCTGTGACCGGACGGGCCGTCGGAACGCCGTTCCT GACATCCAGGGAGACTCCGAGGCCGTGAGCGTGCGGAAGCTGGCTGGTGACATGGGCGAG CTGGCCCTCGAGGGGGCAGAAGGACAGGCGGAGGGGGGCACCCCAGACAAAGAAGCAAGC AACCAGCCCCAGAGCAGCGATGGGACCACCTCCTCCTGAACGTGGCCTTGCCTGAGGCGG CTGGAAGAGACGCGCTGTGGACGGGAGCCCCGGACTGGCCGGGCAGCCTGTCCTCTGAGC AGAGTGTGCCAGGCAAGCCAGGCCCGACTGAAAGGCAGGCCCTGGAGGCTCCGGCCCCAC CAGGGGAAGGCCCTGTCCACACCCCCAGGCTCCCCGCTCCCACCTCCTCACCGCGCCGGG TGCACGTCCAGACACTCTACGCACAGGATGGTGTTTATCCAGCGGGCGCTGGGACTCAGC GGCTGGGTCCTGCCCGCCTGGGGCAGCGGTCTGGGCAGGGACCACGTCCTGGTTCTGCCC CGTCCTTTCCATCCCTGGCCTTCTGTGTCAAGACCTTCTTACCCCTTTTCTAAAAAGCAC TTTTAAACTTTTTAAAAACTTTAAACCTTTTCTCAGCAGAGAGGGAGGGAGCTGACAATT TACCTTTTTTTGGAAACCATTGTAAGCTAAACTCTTCGACCGTCTATGCAGCTCTGAGGT TCCCTCATGGAGCTTCACAGATCCATTTTTTAGGGAAGGGATTTTGTGCTCAAAACTATC TGATTAGCTGTTTGCCCTTTCTACCCAGACAAATGACACCTAGGACCCAGGAAATAAATG CAGATGATTTGTGAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 41-1336, - strand, RNAz p=0.961265 | |
| 71-182, + strand, RNAz p=0.749461 | |
| 793-899, - strand, RNAz p=0.915726 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 41-1336, - strand, RNAz p=0.961265 | |
| 71-182, + strand, RNAz p=0.749461 | |
| 793-899, - strand, RNAz p=0.915726 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 2-432, gnl|bosTau2|chr13 (56180942-56180521) | |
| 2-432, gnl|canFam2|chr24 (35021828-35022404) | |
| 2-432, gnl|dasNov1|scaffold_93030 (1822-1266) | |
| 2-432, gnl|echTel1|scaffold_322385 (34280-34742) | |
| 2-432, gnl|hg17|chr20 (42644193-42644716) | |
| 2-432, gnl|Hg17|chr20 (42644372-42644780) | |
| 2-432, gnl|loxAfr1|scaffold_13403 (2176-2725) | |
| 2-432, gnl|mm7|chr2 (163434463-163434981) | |
| 2-432, gnl|Mm7|chr2 (163434651-163435040) | |
| 2-432, gnl|monDom2|scaffold_1 (157213247-157212765) | |
| 2-432, gnl|oryCun1|scaffold_176362 (139072-139611) | |
| 2-432, gnl|panTro1|chr21 (45088131-45088654) | |
| 2-432, gnl|rheMac2|chr10 (19861164-19860641) | |
| 2-432, gnl|rn3|chr3 (154510187-154510706) | |
| 676-1032, gnl|bosTau2|chr13 (53901344-53900974) | |
| 676-1032, gnl|canFam2|chr24 (35054665-35055163) | |
| 676-1032, gnl|dasNov1|scaffold_72889 (3455-2912) | |
| 676-1032, gnl|echTel1|scaffold_321340 (34887-35321) | |
| 676-1032, gnl|hg17|chr20 (42680321-42680846) | |
| 676-1032, gnl|Hg17|chr20 (42680336-42680778) | |
| 676-1032, gnl|loxAfr1|scaffold_13403 (34155-34677) | |
| 676-1032, gnl|mm7|chr2 (163466328-163466772) | |
| 676-1032, gnl|Mm7|chr2 (163466343-163466707) | |
| 676-1032, gnl|monDom2|scaffold_1 (157185603-157184935) | |
| 676-1032, gnl|oryCun1|scaffold_199234 (51192-51672) | |
| 676-1032, gnl|panTro1|chr21 (45162684-45163209) | |
| 676-1032, gnl|rheMac2|chr10 (19823834-19823308) | |
| 676-1032, gnl|rn3|chr3 (154541154-154541628) | |
| 1098-1393, gnl|bosTau2|chr13 (53900958-53900653) | |
| 1098-1393, gnl|Hg17|chr20 (42680799-42681089) | |
| 1098-1393, gnl|Mm7|chr2 (163466725-163467040) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-432, gnl|bosTau2|chr13 (56180942-56180521) | |
| 2-432, gnl|canFam2|chr24 (35021828-35022404) | |
| 2-432, gnl|dasNov1|scaffold_93030 (1822-1266) | |
| 2-432, gnl|echTel1|scaffold_322385 (34280-34742) | |
| 2-432, gnl|hg17|chr20 (42644193-42644716) | |
| 2-432, gnl|Hg17|chr20 (42644372-42644780) | |
| 2-432, gnl|loxAfr1|scaffold_13403 (2176-2725) | |
| 2-432, gnl|mm7|chr2 (163434463-163434981) | |
| 2-432, gnl|Mm7|chr2 (163434651-163435040) | |
| 2-432, gnl|monDom2|scaffold_1 (157213247-157212765) | |
| 2-432, gnl|oryCun1|scaffold_176362 (139072-139611) | |
| 2-432, gnl|panTro1|chr21 (45088131-45088654) | |
| 2-432, gnl|rheMac2|chr10 (19861164-19860641) | |
| 2-432, gnl|rn3|chr3 (154510187-154510706) | |
| 676-1032, gnl|bosTau2|chr13 (53901344-53900974) | |
| 676-1032, gnl|canFam2|chr24 (35054665-35055163) | |
| 676-1032, gnl|dasNov1|scaffold_72889 (3455-2912) | |
| 676-1032, gnl|echTel1|scaffold_321340 (34887-35321) | |
| 676-1032, gnl|hg17|chr20 (42680321-42680846) | |
| 676-1032, gnl|Hg17|chr20 (42680336-42680778) | |
| 676-1032, gnl|loxAfr1|scaffold_13403 (34155-34677) | |
| 676-1032, gnl|mm7|chr2 (163466328-163466772) | |
| 676-1032, gnl|Mm7|chr2 (163466343-163466707) | |
| 676-1032, gnl|monDom2|scaffold_1 (157185603-157184935) | |
| 676-1032, gnl|oryCun1|scaffold_199234 (51192-51672) | |
| 676-1032, gnl|panTro1|chr21 (45162684-45163209) | |
| 676-1032, gnl|rheMac2|chr10 (19823834-19823308) | |
| 676-1032, gnl|rn3|chr3 (154541154-154541628) | |
| 1098-1393, gnl|bosTau2|chr13 (53900958-53900653) | |
| 1098-1393, gnl|Hg17|chr20 (42680799-42681089) | |
| 1098-1393, gnl|Mm7|chr2 (163466725-163467040) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| fce (0.543183) | |
| cag (0.302389) | |
| eru (0.240096) | |
| cbe (0.239234) | |
| pgl (0.236967) | |
| med (0.232504) | |
| eje (0.197668) | |
| fbs (0.175346) | |
| spl (0.143184) | |
| che (0.136314) | |
| cov (0.132153) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.543183) | |
| cag (0.302389) | |
| eru (0.240096) | |
| cbe (0.239234) | |
| pgl (0.236967) | |
| med (0.232504) | |
| eje (0.197668) | |
| fbs (0.175346) | |
| spl (0.143184) | |
| che (0.136314) | |
| cov (0.132153) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| ldo (0.0970026) |