Ss1.1-Utr1-UTR010055D02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCGTGGAGTCCACACGAGCTCGGGAGGAGCTCGATTGTGCAGAAGGATGAGTGCAGG CTCGGACCCCGTGGTCATCGTCTCGGCGGCGCGGACCGTCATAGGCTCCTTCAATGGTGC TTTGTCCACCGTTCCTGTCCATGACCTGGGCTCGACTGTCATCAGAGAGGTCCTGAAGAG GGCCAATGTGGATCCCAAGGAGGTATCAGAGGTCATATTTGGACACGTTTTGACAGCAGG TTGTGGGCAGAATCCCGTTCGACAAGCCAGTGTGGGGGCAGGAATCCCCTACTCTGTTCC GGCCTGGAGCTGCCAGATGATCTGTGGGTCAGGCCTGAAGGCCGTGTGCCTCGCTGCCCA GGCCATAGGGGTGGGAGACTCCCGCATTGTGGTCGCAGGAGGCATGGAAAACATGAGCAA GGCCCCTCACTTGGTTCACCTGAGGACCGGCGTCAGGCTCGGGGAGGCCGCGCTCACTGA CAGCATCCTCTGTGATGGGCTGACAGATGCGTTTCACAACTACCACATGGGCATCACAGC TGAAAACGTAGCCAAAAAATGGCAAGTGAGTAGAGAAGATCAGGACAGGCTTGCCGCTCT GTCCCAGGACAGGACGGAGAAGGCACAGAAAGCTGGCCATTTTGACAAAGAGATTGTGCC GGTTTTTGTATCTTCTAGAAAAGGTGTCACCGAAGTGAAAACCGATGAGTTTCCTCGCCC CGGGAGCACCCTAGAAGCCATGTCTAAGCTAAAGCCTTACTTTCTCACAGATGGGACAGG AACAGTCACCCCAGCTAATGCCTCAGGAATTAATGATGGTGCTGCTGCTGTGGTTCTTAT GAAGAAGTCAGAGGCTGAGAACCGCGGGCTTACTCCTTTAGCACACATAGTTTCCTGGTC ACAAGCAGGCGTGGAGCCTTCCATCATGGGAACAGGCCCAATCCCGGCAATAAAGCAAGC TGTTGCAAAAGCAGGTTGGTCACTGGAAGATGTGGACATATTTGAAATCAACGAAGCTTT TGCAGCCGTCTCTGTTGCAATAGTTAAAGAACTTGGATTAAACCCAGAAAAGGTCAACAC TGAAGGAGGAGCTATAGCCTTGGGCCACCCGCTTGGAGCATCTGGTTGCCGCATACTTGT TACTCTGTTACACACAATGGAGCGCAAGGGTTGCCAGCGTGGCGTCGCTGCCCTGTGCAT CGGGGGTGGGATGGGAATTGCAATGTGTGTTCAGAGAGGATGAAATGGCCTAGCAATTAA TCAAACCTCATCTCTTTTTAAACTAATTAAATACTAAATTGTGAAATCAGAGGACAGGAG TTCCCTGGTGGCCTAATGGTTAAGGATCTGGCGGTGTCACTGCTGTGGCATGGGTTTGAT CCCTGGCCCAGGAACTTCTGCATGTTACGGGCACAGCCAAAAAGAAGAAATCAGTGGACC AAAGTGAAGATGGAAGTTATTTCCCACTTCACAAGAAACCCAAGGCTTGCCAGCTTGTTG CACTTTTAATGTATAACATTCCAGGTACAAGAAAATTGGTTCTAACACTGTTATAAATAA ATGCGATCAGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCGTGGAGTCCACACGAGCTCGGGAGGAGCTCGATTGTGCAGAAGGATGAGTGCAGG CTCGGACCCCGTGGTCATCGTCTCGGCGGCGCGGACCGTCATAGGCTCCTTCAATGGTGC TTTGTCCACCGTTCCTGTCCATGACCTGGGCTCGACTGTCATCAGAGAGGTCCTGAAGAG GGCCAATGTGGATCCCAAGGAGGTATCAGAGGTCATATTTGGACACGTTTTGACAGCAGG TTGTGGGCAGAATCCCGTTCGACAAGCCAGTGTGGGGGCAGGAATCCCCTACTCTGTTCC GGCCTGGAGCTGCCAGATGATCTGTGGGTCAGGCCTGAAGGCCGTGTGCCTCGCTGCCCA GGCCATAGGGGTGGGAGACTCCCGCATTGTGGTCGCAGGAGGCATGGAAAACATGAGCAA GGCCCCTCACTTGGTTCACCTGAGGACCGGCGTCAGGCTCGGGGAGGCCGCGCTCACTGA CAGCATCCTCTGTGATGGGCTGACAGATGCGTTTCACAACTACCACATGGGCATCACAGC TGAAAACGTAGCCAAAAAATGGCAAGTGAGTAGAGAAGATCAGGACAGGCTTGCCGCTCT GTCCCAGGACAGGACGGAGAAGGCACAGAAAGCTGGCCATTTTGACAAAGAGATTGTGCC GGTTTTTGTATCTTCTAGAAAAGGTGTCACCGAAGTGAAAACCGATGAGTTTCCTCGCCC CGGGAGCACCCTAGAAGCCATGTCTAAGCTAAAGCCTTACTTTCTCACAGATGGGACAGG AACAGTCACCCCAGCTAATGCCTCAGGAATTAATGATGGTGCTGCTGCTGTGGTTCTTAT GAAGAAGTCAGAGGCTGAGAACCGCGGGCTTACTCCTTTAGCACACATAGTTTCCTGGTC ACAAGCAGGCGTGGAGCCTTCCATCATGGGAACAGGCCCAATCCCGGCAATAAAGCAAGC TGTTGCAAAAGCAGGTTGGTCACTGGAAGATGTGGACATATTTGAAATCAACGAAGCTTT TGCAGCCGTCTCTGTTGCAATAGTTAAAGAACTTGGATTAAACCCAGAAAAGGTCAACAC TGAAGGAGGAGCTATAGCCTTGGGCCACCCGCTTGGAGCATCTGGTTGCCGCATACTTGT TACTCTGTTACACACAATGGAGCGCAAGGGTTGCCAGCGTGGCGTCGCTGCCCTGTGCAT CGGGGGTGGGATGGGAATTGCAATGTGTGTTCAGAGAGGATGAAATGGCCTAGCAATTAA TCAAACCTCATCTCTTTTTAAACTAATTAAATACTAAATTGTGAAATCAGAGGACAGGAG TTCCCTGGTGGCCTAATGGTTAAGGATCTGGCGGTGTCACTGCTGTGGCATGGGTTTGAT CCCTGGCCCAGGAACTTCTGCATGTTACGGGCACAGCCAAAAAGAAGAAATCAGTGGACC AAAGTGAAGATGGAAGTTATTTCCCACTTCACAAGAAACCCAAGGCTTGCCAGCTTGTTG CACTTTTAATGTATAACATTCCAGGTACAAGAAAATTGGTTCTAACACTGTTATAAATAA ATGCGATCAGTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1149-1245, - strand, RNAz p=0.687669 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1149-1245, - strand, RNAz p=0.687669 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 7-699, gnl|bosTau2|chr14 (23314478-23315160) | |
| 7-699, gnl|Hg17|chr6 (160153508-160166755) | |
| 7-699, gnl|Mm7|chr17 (11801429-11813588) | |
| 804-963, gnl|bosTau2|chr9 (59627098-59627257) | |
| 804-963, gnl|canFam2|chr1 (52070143-52070299) | |
| 804-963, gnl|danRer3|chr20 (34327787-34327920) | |
| 804-963, gnl|dasNov1|scaffold_80652 (2651-2499) | |
| 804-963, gnl|echTel1|scaffold_160233 (918-1070) | |
| 804-963, gnl|fr1|chrUn (131525733-131525607) | |
| 804-963, gnl|galGal2|chr3 (41711609-41711456) | |
| 804-963, gnl|hg17|chr6 (160168715-160168869) | |
| 804-963, gnl|Hg17|chr6 (160168742-160168901) | |
| 804-963, gnl|loxAfr1|scaffold_31688 (5875-5721) | |
| 804-963, gnl|mm7|chr17 (11815661-11815812) | |
| 804-963, gnl|Mm7|chr17 (11815685-11815844) | |
| 804-963, gnl|monDom2|scaffold_0 (43573206-43573052) | |
| 804-963, gnl|oryCun1|scaffold_187507 (3493-3646) | |
| 804-963, gnl|panTro1|chr5 (164027667-164027821) | |
| 804-963, gnl|rheMac2|chr4 (156765962-156766116) | |
| 804-963, gnl|rn3|chr1 (42104821-42104972) | |
| 804-963, gnl|tetNig1|chr14 (3554747-3554873) | |
| 804-963, gnl|xenTro1|scaffold_41 (3000175-3000040) | |
| 1071-1245, gnl|bosTau2|chr9 (59628509-59628683) | |
| 1071-1245, gnl|canFam2|chr1 (52071295-52071499) | |
| 1071-1245, gnl|danRer3|chr20 (34330398-34330601) | |
| 1071-1245, gnl|dasNov1|scaffold_80652 (1619-1398) | |
| 1071-1245, gnl|echTel1|scaffold_160233 (3709-3896) | |
| 1071-1245, gnl|fr1|chrUn (131525354-131525147) | |
| 1071-1245, gnl|galGal2|chr3 (41708948-41708747) | |
| 1071-1245, gnl|hg17|chr6 (160170076-160170282) | |
| 1071-1245, gnl|Hg17|chr6 (160170100-160170273) | |
| 1071-1245, gnl|loxAfr1|scaffold_31688 (4379-4184) | |
| 1071-1245, gnl|mm7|chr17 (11818051-11818251) | |
| 1071-1245, gnl|Mm7|chr17 (11837271-11837444) | |
| 1071-1245, gnl|monDom2|scaffold_0 (43572153-43571937) | |
| 1071-1245, gnl|oryCun1|scaffold_187507 (4541-4748) | |
| 1071-1245, gnl|panTro1|chr5 (164028998-164029203) | |
| 1071-1245, gnl|rheMac2|chr4 (156767322-156767527) | |
| 1071-1245, gnl|rn3|chr1 (42106205-42106409) | |
| 1071-1245, gnl|tetNig1|chr14 (3555150-3555336) | |
| 1071-1245, gnl|xenTro1|scaffold_41 (2996557-2996353) | |
| 1439-1572, gnl|bosTau2|chr14 (23315861-23315993) | |
| 1439-1572, gnl|Hg17|chr6 (160170220-160170493) | |
| 1439-1572, gnl|Mm7|chr17 (11818189-11818430) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-699, gnl|bosTau2|chr14 (23314478-23315160) | |
| 7-699, gnl|Hg17|chr6 (160153508-160166755) | |
| 7-699, gnl|Mm7|chr17 (11801429-11813588) | |
| 804-963, gnl|bosTau2|chr9 (59627098-59627257) | |
| 804-963, gnl|canFam2|chr1 (52070143-52070299) | |
| 804-963, gnl|danRer3|chr20 (34327787-34327920) | |
| 804-963, gnl|dasNov1|scaffold_80652 (2651-2499) | |
| 804-963, gnl|echTel1|scaffold_160233 (918-1070) | |
| 804-963, gnl|fr1|chrUn (131525733-131525607) | |
| 804-963, gnl|galGal2|chr3 (41711609-41711456) | |
| 804-963, gnl|hg17|chr6 (160168715-160168869) | |
| 804-963, gnl|Hg17|chr6 (160168742-160168901) | |
| 804-963, gnl|loxAfr1|scaffold_31688 (5875-5721) | |
| 804-963, gnl|mm7|chr17 (11815661-11815812) | |
| 804-963, gnl|Mm7|chr17 (11815685-11815844) | |
| 804-963, gnl|monDom2|scaffold_0 (43573206-43573052) | |
| 804-963, gnl|oryCun1|scaffold_187507 (3493-3646) | |
| 804-963, gnl|panTro1|chr5 (164027667-164027821) | |
| 804-963, gnl|rheMac2|chr4 (156765962-156766116) | |
| 804-963, gnl|rn3|chr1 (42104821-42104972) | |
| 804-963, gnl|tetNig1|chr14 (3554747-3554873) | |
| 804-963, gnl|xenTro1|scaffold_41 (3000175-3000040) | |
| 1071-1245, gnl|bosTau2|chr9 (59628509-59628683) | |
| 1071-1245, gnl|canFam2|chr1 (52071295-52071499) | |
| 1071-1245, gnl|danRer3|chr20 (34330398-34330601) | |
| 1071-1245, gnl|dasNov1|scaffold_80652 (1619-1398) | |
| 1071-1245, gnl|echTel1|scaffold_160233 (3709-3896) | |
| 1071-1245, gnl|fr1|chrUn (131525354-131525147) | |
| 1071-1245, gnl|galGal2|chr3 (41708948-41708747) | |
| 1071-1245, gnl|hg17|chr6 (160170076-160170282) | |
| 1071-1245, gnl|Hg17|chr6 (160170100-160170273) | |
| 1071-1245, gnl|loxAfr1|scaffold_31688 (4379-4184) | |
| 1071-1245, gnl|mm7|chr17 (11818051-11818251) | |
| 1071-1245, gnl|Mm7|chr17 (11837271-11837444) | |
| 1071-1245, gnl|monDom2|scaffold_0 (43572153-43571937) | |
| 1071-1245, gnl|oryCun1|scaffold_187507 (4541-4748) | |
| 1071-1245, gnl|panTro1|chr5 (164028998-164029203) | |
| 1071-1245, gnl|rheMac2|chr4 (156767322-156767527) | |
| 1071-1245, gnl|rn3|chr1 (42106205-42106409) | |
| 1071-1245, gnl|tetNig1|chr14 (3555150-3555336) | |
| 1071-1245, gnl|xenTro1|scaffold_41 (2996557-2996353) | |
| 1439-1572, gnl|bosTau2|chr14 (23315861-23315993) | |
| 1439-1572, gnl|Hg17|chr6 (160170220-160170493) | |
| 1439-1572, gnl|Mm7|chr17 (11818189-11818430) |
| Expressed library(ies): 28 entry(ies) | More info |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
| ecc (0.575175) | |
| elu (0.385356) | |
| cli (0.305623) | |
| fce (0.271592) | |
| cov (0.264306) | |
| sug (0.254582) | |
| ece (0.229305) | |
| tes (0.207814) | |
| fli (0.202881) | |
| fty (0.17584) | |
| ill (0.175593) | |
| rec (0.17307) | |
| eye (0.170503) | |
| cje (0.165235) | |
| csp (0.161186) | |
| lun (0.150489) | |
| ski (0.146735) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ese (0.126502) | |
| bla (0.124347) | |
| cly (0.120642) | |
| eru (0.120048) | |
| spc (0.113366) |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.575175) | |
| elu (0.385356) | |
| cli (0.305623) | |
| fce (0.271592) | |
| cov (0.264306) | |
| sug (0.254582) | |
| ece (0.229305) | |
| tes (0.207814) | |
| fli (0.202881) | |
| fty (0.17584) | |
| ill (0.175593) | |
| rec (0.17307) | |
| eye (0.170503) | |
| cje (0.165235) | |
| csp (0.161186) | |
| lun (0.150489) | |
| ski (0.146735) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ese (0.126502) | |
| bla (0.124347) | |
| cly (0.120642) | |
| eru (0.120048) | |
| spc (0.113366) |