Non-Coding RNA Search

Ss1.1-Utr1-UTR010055H11.5

Sequence:


               
               GGAGCTGGGGCTTGGGGAGGTCCGTGTAAGCGGCGCTGGCTTCCCTCGGTCCCTCCCCAG
CAGTCACTCGGGGCACCGCCGCGGGACGATGGAGCTGGGCTGGTGGCCGCAGCTGGGGCT
CACTTTTCTGCAGCTCCTTCTCATCTCGTCCTTGCCAAGAGAGTACACAGTCATTAATGA
AGCCTGCCCTGGAGCCGAGTGGAATATCATGTGTCGGGAGTGTTGTGAATATGATCAGAT
TGAGTGCGTCTGCCCTGGAAAGAAGGAAGTGGTGGGTTATACCATCCCTTGCTGCAGAAA
CGAGGAGAATGAGTGTGACTCCTGCCTGATTCACCCAGGTTGTACCATCTTTGAGAACTG
CAAGACATGCCGAAACGGCTCGTGGGGGGGTACCCTGGACGACTTCTACGTGAAGGGCAT
CTACTGCGCCGAGTGCCGCGCGGGCTGGTACGGAGGAGACTGCATGCGATGTGGCCAGGT
TCTCCGAGTCCCGAAAGGTCAGATTTTGCTGGAGAGCTACCCACTAAATGCTCACTGCGA
ATGGACCATTCACGCCAAGCCTGGGTTTATCATCCAGCTAAGGTAAGGAGCTTCGGTCAG
AATTAGGGAGTCCGAGGTTATAAGGAAACACAATAATAGAACCAAAGGCCCTGAATCCTA
GTGACGAGGGGCTGACCCCCAGCACTTTATTCCTAAAAGCAGAAACTTGCTATTAGAGCC
TTTTCTTTTGCCTCTCGGTGATTTTTGTGGGGTAAAGCCTGAGTGAGGGAGTTCCCTTAT
GGCTCAGCAGGTTAAGAGCCTGACTGGTGTCCATGAGGATGCAGATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCTGGGGCTTGGGGAGGTCCGTGTAAGCGGCGCTGGCTTCCCTCGGTCCCTCCCCAG
CAGTCACTCGGGGCACCGCCGCGGGACGATGGAGCTGGGCTGGTGGCCGCAGCTGGGGCT
CACTTTTCTGCAGCTCCTTCTCATCTCGTCCTTGCCAAGAGAGTACACAGTCATTAATGA
AGCCTGCCCTGGAGCCGAGTGGAATATCATGTGTCGGGAGTGTTGTGAATATGATCAGAT
TGAGTGCGTCTGCCCTGGAAAGAAGGAAGTGGTGGGTTATACCATCCCTTGCTGCAGAAA
CGAGGAGAATGAGTGTGACTCCTGCCTGATTCACCCAGGTTGTACCATCTTTGAGAACTG
CAAGACATGCCGAAACGGCTCGTGGGGGGGTACCCTGGACGACTTCTACGTGAAGGGCAT
CTACTGCGCCGAGTGCCGCGCGGGCTGGTACGGAGGAGACTGCATGCGATGTGGCCAGGT
TCTCCGAGTCCCGAAAGGTCAGATTTTGCTGGAGAGCTACCCACTAAATGCTCACTGCGA
ATGGACCATTCACGCCAAGCCTGGGTTTATCATCCAGCTAAGGTAAGGAGCTTCGGTCAG
AATTAGGGAGTCCGAGGTTATAAGGAAACACAATAATAGAACCAAAGGCCCTGAATCCTA
GTGACGAGGGGCTGACCCCCAGCACTTTATTCCTAAAAGCAGAAACTTGCTATTAGAGCC
TTTTCTTTTGCCTCTCGGTGATTTTTGTGGGGTAAAGCCTGAGTGAGGGAGTTCCCTTAT
GGCTCAGCAGGTTAAGAGCCTGACTGGTGTCCATGAGGATGCAGATTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61862860|ref|XP_614213.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61862860|ref|XP_614213.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               160-340, gnl|bosTau2|chr15 (39632482-39632662)
               

               
               160-340, gnl|Hg17|chr11 (35472398-35472218)
               

               
               160-340, gnl|Mm7|chr2 (102431518-102431698)
               


               
               468-767, gnl|bosTau2|chr15 (39651871-39652167)
               

               
               468-767, gnl|Hg17|chr11 (35452868-35452602)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               160-340, gnl|bosTau2|chr15 (39632482-39632662)
               

               
               160-340, gnl|Hg17|chr11 (35472398-35472218)
               

               
               160-340, gnl|Mm7|chr2 (102431518-102431698)
               


               
               468-767, gnl|bosTau2|chr15 (39651871-39652167)
               

               
               468-767, gnl|Hg17|chr11 (35452868-35452602)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	160-340, gnl\|bosTau2\|chr15 (39632482-39632662)
	160-340, gnl\|Hg17\|chr11 (35472398-35472218)
	160-340, gnl\|Mm7\|chr2 (102431518-102431698)

	468-767, gnl\|bosTau2\|chr15 (39651871-39652167)
	468-767, gnl\|Hg17\|chr11 (35452868-35452602)