Ss1.1-Utr1-UTR010056B10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCCCGGAGGAGATCGGCTGGCGCAATGTCACCAGGCTGCTGGTGTTCGCCACGGACGAT GGCTTCCACTTTGCGGGCGACGGGAAGCTGGGCGCCATCCTGACCCCCAACGACGGCCGC TGCCACCTGGAAGACAACTTATACAAAAGCAGCAATGAATTCGACTACCCATCAGTGGGA CAGCTGGCACACAAACTGGCCGAGAGCAACATCCAGCCCATCTTTGCCGTGACCAAGAAA ATGGTGAAAACGTATGAGAAGCTCACAGACATCATCCCCAAGTCCGCCGTCGGGGAGCTG TCGGAGGATTCCAGCAACGTGGTCCAGCTCATTAAGAACGCCTACAATAAACTGTCCTCC AGAGTGTTTTTGGATCACAACGCCCTCCCTGACACCCTGAAGGTCACGTACGACTCCTTC TGCAGCAACGGGGTGTCGCAGGTGAACCAGCCCAGAGGGGACTGCGACGGCGTCCAGATC AACGTCCCGATCACCTTCCAGGTGAAGGTCACCGCCTCCGAGTGCATCCAGGAGCAGTCG TTCGTCATCCGGGCGCTGGGCTTCACCGACACGGTGACCGTGCGGGTGCTCCCCCAGTGT GAGTGCCGCTGCGGGGACAGCAGCAAGGAGCGCAGCCTCTGCGGCAACAAGGGCTCCATG GAGTGCGGGGTCTGCAGGTGCGATGCCGGCTACATCGGGAAGCACTGCGAGTGCCAGACG CAGGGCCGGAGCAGCCAGGAGCTGGAAGGAAGCTGCCGCAAGGACAACAGCTCCATCATC TGCTCGGGGCTGGGCGACTGCATCTGCGGGCAGTGCGTGTGCCACACGAGCGACGTGCCC AACAAGAAGATTTACGGCCAGTTCTGCGAGTGTGACAACATGAACTGCGAGCGCTTCGAT GGCCAAGTCTGCGGGGGCGAGAAGCGGGGCCTCTGCTTCTGCGGCACCTGCAGGTGCCAA GAAGGCTTCGAGGGCTCGGCGTGCCAGTGCCTCAAGTCCACGCAGGGCTGCCTCAACCTG CAGGGCGTCGAGTGCAGCGGCCGCGGCCGGTGCCGCTGCAACGTGTGCCAGTGTGACTTT GGCTACCAGCCGCCCCTGTGCACCGACTGCCCCAGCTGCCAGGTGCCCTGCGCCCGCTAC GCCAAATGCGCCGAGTGCCTGAAGTTCGACACCGGCCCCTTCGCCAAAAACTGCAGCGCA GAGTGCGGGACCACCAAGCTGCTGCCCAGCCGGATGTCGGGCCGCAAGTGCAATGAGCGG GACTCCGAGGGCTGCTGGATGACCTACTTCCTGGTGCAGCGCGACGGCCGGGACAACTAC GACCTGCACGTGGAGGAGACGCGCGAGTGTGTGAAAGGCCCCAACATCGCCGCCATCGTG GGGGGCACCGTGGGGGGAGTCGTGCTCGTGGGCATCTTCCTGCTGGCCATCTGGAAGGTC CTGACCCACCTGAGTGACCTCAGGGAGTACAAGCGCTTCGAGAAGGAGAAGCTCAAGTCC CAGTGGAACAACGATAACCCCCTTTTCAAGAGCGCCACCACGACAGTTATGAACCCCAAG TTTGCTGAGCGCTAGGGGTGCTTGGTGAAGACAAGGCCTTCTGCTCCGCCCAGACGGGGC CGCCTCCCCTCCAGCAGGCTGACCGTGACCCTGCCTGGCGGACCCAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCCCGGAGGAGATCGGCTGGCGCAATGTCACCAGGCTGCTGGTGTTCGCCACGGACGAT GGCTTCCACTTTGCGGGCGACGGGAAGCTGGGCGCCATCCTGACCCCCAACGACGGCCGC TGCCACCTGGAAGACAACTTATACAAAAGCAGCAATGAATTCGACTACCCATCAGTGGGA CAGCTGGCACACAAACTGGCCGAGAGCAACATCCAGCCCATCTTTGCCGTGACCAAGAAA ATGGTGAAAACGTATGAGAAGCTCACAGACATCATCCCCAAGTCCGCCGTCGGGGAGCTG TCGGAGGATTCCAGCAACGTGGTCCAGCTCATTAAGAACGCCTACAATAAACTGTCCTCC AGAGTGTTTTTGGATCACAACGCCCTCCCTGACACCCTGAAGGTCACGTACGACTCCTTC TGCAGCAACGGGGTGTCGCAGGTGAACCAGCCCAGAGGGGACTGCGACGGCGTCCAGATC AACGTCCCGATCACCTTCCAGGTGAAGGTCACCGCCTCCGAGTGCATCCAGGAGCAGTCG TTCGTCATCCGGGCGCTGGGCTTCACCGACACGGTGACCGTGCGGGTGCTCCCCCAGTGT GAGTGCCGCTGCGGGGACAGCAGCAAGGAGCGCAGCCTCTGCGGCAACAAGGGCTCCATG GAGTGCGGGGTCTGCAGGTGCGATGCCGGCTACATCGGGAAGCACTGCGAGTGCCAGACG CAGGGCCGGAGCAGCCAGGAGCTGGAAGGAAGCTGCCGCAAGGACAACAGCTCCATCATC TGCTCGGGGCTGGGCGACTGCATCTGCGGGCAGTGCGTGTGCCACACGAGCGACGTGCCC AACAAGAAGATTTACGGCCAGTTCTGCGAGTGTGACAACATGAACTGCGAGCGCTTCGAT GGCCAAGTCTGCGGGGGCGAGAAGCGGGGCCTCTGCTTCTGCGGCACCTGCAGGTGCCAA GAAGGCTTCGAGGGCTCGGCGTGCCAGTGCCTCAAGTCCACGCAGGGCTGCCTCAACCTG CAGGGCGTCGAGTGCAGCGGCCGCGGCCGGTGCCGCTGCAACGTGTGCCAGTGTGACTTT GGCTACCAGCCGCCCCTGTGCACCGACTGCCCCAGCTGCCAGGTGCCCTGCGCCCGCTAC GCCAAATGCGCCGAGTGCCTGAAGTTCGACACCGGCCCCTTCGCCAAAAACTGCAGCGCA GAGTGCGGGACCACCAAGCTGCTGCCCAGCCGGATGTCGGGCCGCAAGTGCAATGAGCGG GACTCCGAGGGCTGCTGGATGACCTACTTCCTGGTGCAGCGCGACGGCCGGGACAACTAC GACCTGCACGTGGAGGAGACGCGCGAGTGTGTGAAAGGCCCCAACATCGCCGCCATCGTG GGGGGCACCGTGGGGGGAGTCGTGCTCGTGGGCATCTTCCTGCTGGCCATCTGGAAGGTC CTGACCCACCTGAGTGACCTCAGGGAGTACAAGCGCTTCGAGAAGGAGAAGCTCAAGTCC CAGTGGAACAACGATAACCCCCTTTTCAAGAGCGCCACCACGACAGTTATGAACCCCAAG TTTGCTGAGCGCTAGGGGTGCTTGGTGAAGACAAGGCCTTCTGCTCCGCCCAGACGGGGC CGCCTCCCCTCCAGCAGGCTGACCGTGACCCTGCCTGGCGGACCCAGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 674-832, + strand, RNAz p=0.721259 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 674-832, + strand, RNAz p=0.721259 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-161, gnl|bosTau2|chr1 (94779355-94779195) | |
| 1-161, gnl|Hg17|chr21 (45144824-45144664) | |
| 1-161, gnl|Mm7|chr10 (77204528-77204688) | |
| 349-489, gnl|bosTau2|chr1 (94775642-94775502) | |
| 349-489, gnl|Hg17|chr21 (45137887-45137747) | |
| 349-489, gnl|Mm7|chr10 (77211978-77212118) | |
| 674-947, gnl|bosTau2|chr1 (94774081-94773809) | |
| 674-947, gnl|Hg17|chr21 (45134569-45134208) | |
| 674-947, gnl|Mm7|chr10 (77214063-77214364) | |
| 1082-1294, gnl|bosTau2|chr1 (94773310-94773102) | |
| 1082-1294, gnl|Hg17|chr21 (45133328-45133087) | |
| 1082-1294, gnl|Mm7|chr10 (77215554-77215751) | |
| 1345-1513, gnl|bosTau2|chr1 (94771673-94771505) | |
| 1345-1513, gnl|canFam2|chr27 (4998050-4997921) | |
| 1345-1513, gnl|danRer3|chr24 (785542-785403) | |
| 1345-1513, gnl|dasNov1|scaffold_37407 (12322-12160) | |
| 1345-1513, gnl|echTel1|scaffold_291615 (99018-99162) | |
| 1345-1513, gnl|fr1|chrUn (195069107-195069263) | |
| 1345-1513, gnl|galGal2|chr7 (7034925-7035081) | |
| 1345-1513, gnl|hg17|chr21 (45131057-45131214) | |
| 1345-1513, gnl|Hg17|chr21 (45131246-45131078) | |
| 1345-1513, gnl|loxAfr1|scaffold_90154 (150-5) | |
| 1345-1513, gnl|mm7|chr10 (77219416-77219259) | |
| 1345-1513, gnl|Mm7|chr10 (77219225-77219393) | |
| 1345-1513, gnl|monDom2|scaffold_189 (1247263-1247412) | |
| 1345-1513, gnl|oryCun1|scaffold_8496 (904-760) | |
| 1345-1513, gnl|panTro1|chr22 (45304084-45304241) | |
| 1345-1513, gnl|rheMac2|chr3 (1813482-1813325) | |
| 1345-1513, gnl|rn3|chr20 (11447748-11447905) | |
| 1345-1513, gnl|tetNig1|chrUn_random (133186514-133186656) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-161, gnl|bosTau2|chr1 (94779355-94779195) | |
| 1-161, gnl|Hg17|chr21 (45144824-45144664) | |
| 1-161, gnl|Mm7|chr10 (77204528-77204688) | |
| 349-489, gnl|bosTau2|chr1 (94775642-94775502) | |
| 349-489, gnl|Hg17|chr21 (45137887-45137747) | |
| 349-489, gnl|Mm7|chr10 (77211978-77212118) | |
| 674-947, gnl|bosTau2|chr1 (94774081-94773809) | |
| 674-947, gnl|Hg17|chr21 (45134569-45134208) | |
| 674-947, gnl|Mm7|chr10 (77214063-77214364) | |
| 1082-1294, gnl|bosTau2|chr1 (94773310-94773102) | |
| 1082-1294, gnl|Hg17|chr21 (45133328-45133087) | |
| 1082-1294, gnl|Mm7|chr10 (77215554-77215751) | |
| 1345-1513, gnl|bosTau2|chr1 (94771673-94771505) | |
| 1345-1513, gnl|canFam2|chr27 (4998050-4997921) | |
| 1345-1513, gnl|danRer3|chr24 (785542-785403) | |
| 1345-1513, gnl|dasNov1|scaffold_37407 (12322-12160) | |
| 1345-1513, gnl|echTel1|scaffold_291615 (99018-99162) | |
| 1345-1513, gnl|fr1|chrUn (195069107-195069263) | |
| 1345-1513, gnl|galGal2|chr7 (7034925-7035081) | |
| 1345-1513, gnl|hg17|chr21 (45131057-45131214) | |
| 1345-1513, gnl|Hg17|chr21 (45131246-45131078) | |
| 1345-1513, gnl|loxAfr1|scaffold_90154 (150-5) | |
| 1345-1513, gnl|mm7|chr10 (77219416-77219259) | |
| 1345-1513, gnl|Mm7|chr10 (77219225-77219393) | |
| 1345-1513, gnl|monDom2|scaffold_189 (1247263-1247412) | |
| 1345-1513, gnl|oryCun1|scaffold_8496 (904-760) | |
| 1345-1513, gnl|panTro1|chr22 (45304084-45304241) | |
| 1345-1513, gnl|rheMac2|chr3 (1813482-1813325) | |
| 1345-1513, gnl|rn3|chr20 (11447748-11447905) | |
| 1345-1513, gnl|tetNig1|chrUn_random (133186514-133186656) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cly (0.241284) | |
| cbl (0.229595) | |
| cty (0.20816) | |
| csp (0.161186) | |
| cag (0.151194) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cly (0.241284) | |
| cbl (0.229595) | |
| cty (0.20816) | |
| csp (0.161186) | |
| cag (0.151194) |