Ss1.1-Utr1-UTR010056G09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAAAGAATGTTATATTTACTCCTACGAATATAATTACAAAGTGAATTTTTGCTCATGCT TGGTTGAGCCCCAACGACCCTGCCTGCCAGGAGATTCTGTTTGACCCGCAGACCACCATC CCGGAGCTGTTTGCCATTGTGCGCCAGTGGGTACCGCAGGTCCAGCACAAGATCGACGTC ATTGGCAATGAGATTCTGCGGCGAGGCTGCCATGTGAATGATCGCGATGGGCTGACCGAC ATGACACTGCTCCATTATGCGTGCAAGGCTGGGGCCCACGGAGTTGGGGACCCCGCGGCA GCTGTGCGCCTCTCGCAGCAGCTGCTGGCACTGGGTGCCGATGTGACCCTGCGCAGCCGC TGGACGAACATGAACGCGCTTCACTACGCGGCCTATTTCGATGTGCCCGACCTTGTGCGC GTGCTGCTGAAGGGCGCACGGCCGCGAGTGGTGAACTCCACGTGCAGTGACTTCAACCAC GGCTCAGCCCTGCACATCGCGGCCTCCAACCTGTGCCTGGGCGCTGCCAAGTGTCTGCTG GAGCACGGTGCCAACCCAGCACTTCGGAACCGAAAGGGACAGGTGCCAGCGGAGGTGGTC CCAGACCCCATGGACATGTCCCTGGACAAGGCAGAGGCGGCGCTGGTGGCCAAGGAGCTG AGGACGCTACTGGAGGAGGCTGTGCCGCTCTCCTGTGCCCTCCCCAAGGTCACACTACCC AACTATGACAACGTCCCAGGCAATCTCATGCTCAGCGCCCTGGGCCTGCGCCTGGGAGAC CGTGTGCTGCTGGATGGCCAGAAGACGGGCACGCCTGCGGTTCTGCGGGACCACGGAGTT CGCCAGCGGCCAACCCTCCTGGGATGGAGCTGGATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAAAGAATGTTATATTTACTCCTACGAATATAATTACAAAGTGAATTTTTGCTCATGCT TGGTTGAGCCCCAACGACCCTGCCTGCCAGGAGATTCTGTTTGACCCGCAGACCACCATC CCGGAGCTGTTTGCCATTGTGCGCCAGTGGGTACCGCAGGTCCAGCACAAGATCGACGTC ATTGGCAATGAGATTCTGCGGCGAGGCTGCCATGTGAATGATCGCGATGGGCTGACCGAC ATGACACTGCTCCATTATGCGTGCAAGGCTGGGGCCCACGGAGTTGGGGACCCCGCGGCA GCTGTGCGCCTCTCGCAGCAGCTGCTGGCACTGGGTGCCGATGTGACCCTGCGCAGCCGC TGGACGAACATGAACGCGCTTCACTACGCGGCCTATTTCGATGTGCCCGACCTTGTGCGC GTGCTGCTGAAGGGCGCACGGCCGCGAGTGGTGAACTCCACGTGCAGTGACTTCAACCAC GGCTCAGCCCTGCACATCGCGGCCTCCAACCTGTGCCTGGGCGCTGCCAAGTGTCTGCTG GAGCACGGTGCCAACCCAGCACTTCGGAACCGAAAGGGACAGGTGCCAGCGGAGGTGGTC CCAGACCCCATGGACATGTCCCTGGACAAGGCAGAGGCGGCGCTGGTGGCCAAGGAGCTG AGGACGCTACTGGAGGAGGCTGTGCCGCTCTCCTGTGCCCTCCCCAAGGTCACACTACCC AACTATGACAACGTCCCAGGCAATCTCATGCTCAGCGCCCTGGGCCTGCGCCTGGGAGAC CGTGTGCTGCTGGATGGCCAGAAGACGGGCACGCCTGCGGTTCTGCGGGACCACGGAGTT CGCCAGCGGCCAACCCTCCTGGGATGGAGCTGGATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 687-804, - strand, RNAz p=0.587807 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 687-804, - strand, RNAz p=0.587807 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 69-192, gnl|bosTau2|chr18 (41815437-41815314) | |
| 69-192, gnl|canFam2|chr1 (119570591-119570499) | |
| 69-192, gnl|danRer3|chr15 (36973001-36973093) | |
| 69-192, gnl|dasNov1|scaffold_9259 (25614-25703) | |
| 69-192, gnl|echTel1|scaffold_158221 (3632-3724) | |
| 69-192, gnl|fr1|chrUn (267272913-267272823) | |
| 69-192, gnl|hg17|chr19 (41209870-41209962) | |
| 69-192, gnl|Hg17|chr19 (41209997-41209874) | |
| 69-192, gnl|loxAfr1|scaffold_21333 (9070-9162) | |
| 69-192, gnl|mm7|chr17 (70080476-70080384) | |
| 69-192, gnl|monDom2|scaffold_139 (2049750-2049842) | |
| 69-192, gnl|panTro1|chr20 (38055862-38055954) | |
| 69-192, gnl|rheMac2|chr19 (42516804-42516896) | |
| 69-192, gnl|rn3|chr1 (85321571-85321479) | |
| 69-192, gnl|tetNig1|chrUn_random (135446307-135446401) | |
| 69-192, gnl|xenTro1|scaffold_572 (780790-780698) | |
| 286-448, gnl|bosTau2|chr18 (41814929-41814767) | |
| 286-448, gnl|Hg17|chr19 (41209490-41209328) | |
| 286-448, gnl|Mm7|chr7 (27238934-27239096) | |
| 567-804, gnl|bosTau2|chr18 (41813772-41813535) | |
| 567-804, gnl|canFam2|chr1 (119572836-119572550) | |
| 567-804, gnl|danRer3|chr15 (36966938-36967182) | |
| 567-804, gnl|dasNov1|scaffold_9259 (25010-25261) | |
| 567-804, gnl|echTel1|scaffold_158221 (1762-2052) | |
| 567-804, gnl|fr1|chrUn (267276608-267276331) | |
| 567-804, gnl|hg17|chr19 (41207126-41207411) | |
| 567-804, gnl|Hg17|chr19 (41207375-41207138) | |
| 567-804, gnl|loxAfr1|scaffold_23180 (5052-5292) | |
| 567-804, gnl|mm7|chr7 (27240642-27240355) | |
| 567-804, gnl|Mm7|chr7 (27240391-27240628) | |
| 567-804, gnl|monDom2|scaffold_139 (2048746-2049002) | |
| 567-804, gnl|panTro1|chr20 (38053112-38053397) | |
| 567-804, gnl|rheMac2|chr19 (42514076-42514361) | |
| 567-804, gnl|rn3|chr1 (85323624-85323337) | |
| 567-804, gnl|tetNig1|chrUn_random (135445252-135445516) | |
| 567-804, gnl|xenTro1|scaffold_572 (785698-785433) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 69-192, gnl|bosTau2|chr18 (41815437-41815314) | |
| 69-192, gnl|canFam2|chr1 (119570591-119570499) | |
| 69-192, gnl|danRer3|chr15 (36973001-36973093) | |
| 69-192, gnl|dasNov1|scaffold_9259 (25614-25703) | |
| 69-192, gnl|echTel1|scaffold_158221 (3632-3724) | |
| 69-192, gnl|fr1|chrUn (267272913-267272823) | |
| 69-192, gnl|hg17|chr19 (41209870-41209962) | |
| 69-192, gnl|Hg17|chr19 (41209997-41209874) | |
| 69-192, gnl|loxAfr1|scaffold_21333 (9070-9162) | |
| 69-192, gnl|mm7|chr17 (70080476-70080384) | |
| 69-192, gnl|monDom2|scaffold_139 (2049750-2049842) | |
| 69-192, gnl|panTro1|chr20 (38055862-38055954) | |
| 69-192, gnl|rheMac2|chr19 (42516804-42516896) | |
| 69-192, gnl|rn3|chr1 (85321571-85321479) | |
| 69-192, gnl|tetNig1|chrUn_random (135446307-135446401) | |
| 69-192, gnl|xenTro1|scaffold_572 (780790-780698) | |
| 286-448, gnl|bosTau2|chr18 (41814929-41814767) | |
| 286-448, gnl|Hg17|chr19 (41209490-41209328) | |
| 286-448, gnl|Mm7|chr7 (27238934-27239096) | |
| 567-804, gnl|bosTau2|chr18 (41813772-41813535) | |
| 567-804, gnl|canFam2|chr1 (119572836-119572550) | |
| 567-804, gnl|danRer3|chr15 (36966938-36967182) | |
| 567-804, gnl|dasNov1|scaffold_9259 (25010-25261) | |
| 567-804, gnl|echTel1|scaffold_158221 (1762-2052) | |
| 567-804, gnl|fr1|chrUn (267276608-267276331) | |
| 567-804, gnl|hg17|chr19 (41207126-41207411) | |
| 567-804, gnl|Hg17|chr19 (41207375-41207138) | |
| 567-804, gnl|loxAfr1|scaffold_23180 (5052-5292) | |
| 567-804, gnl|mm7|chr7 (27240642-27240355) | |
| 567-804, gnl|Mm7|chr7 (27240391-27240628) | |
| 567-804, gnl|monDom2|scaffold_139 (2048746-2049002) | |
| 567-804, gnl|panTro1|chr20 (38053112-38053397) | |
| 567-804, gnl|rheMac2|chr19 (42514076-42514361) | |
| 567-804, gnl|rn3|chr1 (85323624-85323337) | |
| 567-804, gnl|tetNig1|chrUn_random (135445252-135445516) | |
| 567-804, gnl|xenTro1|scaffold_572 (785698-785433) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) |