Non-Coding RNA Search

Ss1.1-Utr1-UTR010058B11.5

Sequence:


               
               AGACTGTGTGGTTCCTCATGTATGTGAAGGCCAGGTAGTTGACCCTCTCGTGGTATGCTT
TTGGCAACGGAGTCATGGGCTGGGGAATCCTACTGTCTGCAACATAATCCCCCATTTTAG
GTGTCAAAAATCTGCTGGTTATGGCTTTATTTCTTGGCTTATGACTTTTTGCTGTTAAAG
AGCCTAGAATGAGGTTTCATTCTTTCTAGTCATTTGTATTTTACCATGACTGTCTAATAG
CCTTAGAGTGGAAGAACATGGGTACTTAAGGAAGGTGAGAGGGGGACAAAAAAGAGCCCT
CTGGCATAGTGGCCATTCCTTTGTGGGAGACATTGCTACTCAGGTGTTTCCTTGGCATCC
TGCTGGAGAATGAACTAAATGAAAAATAGAAAAAATCGTGCTTAGCGCAACTAAGCACTG
TATGTATAATTGAACCTCAGACTACCTCAGGTGTAAGAGATTTCAAGATGCTCTGGTTTC
TGCCTCACTAATAATCTGGTATTTATTTGAATGTTTCCTCCCCTTGACAATTTCTCTTCT
CTCCGGTTTTGAGTTAAAAAAGACAGGACTGAGGCATAAGCTGTTCAGCTATTCTCATCA
AGCCTTCAGAGACTCAGCATTTGAAGGGGGCCGGGTGCTGCTTATCGCCCAAGTACCCAC
CAGGGGGTAAATTATGCCAGGAAGCTGCCAGGATGCACAGCTGTCAGAGGAGTAGCTGCG
CTCCCCATGTTAGCCGTGAAAAGCAATCATAGGAAGAAATTGGTGGGGGGCAGGAAGGCA
GTCTTTGAGTAACTGAGATCATCATTAAGTGATTAATCTGTAAGGTCTGATGCTGCCACC
CCATTCTCCTGTTCTTTCCTAGCACCTTGGAACATTTCAAGAGGTGGCTCCAGCCAGATA
AAGTAGCCATCAGTACGGAGGAGGTCCAGTATCTGATTCCTCCAGAGTCACAGGTGGAGA
AGCCATCGGCCGGGGAGGAGCCAGCAGCGGCGGAACAGTAAATTACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACTGTGTGGTTCCTCATGTATGTGAAGGCCAGGTAGTTGACCCTCTCGTGGTATGCTT
TTGGCAACGGAGTCATGGGCTGGGGAATCCTACTGTCTGCAACATAATCCCCCATTTTAG
GTGTCAAAAATCTGCTGGTTATGGCTTTATTTCTTGGCTTATGACTTTTTGCTGTTAAAG
AGCCTAGAATGAGGTTTCATTCTTTCTAGTCATTTGTATTTTACCATGACTGTCTAATAG
CCTTAGAGTGGAAGAACATGGGTACTTAAGGAAGGTGAGAGGGGGACAAAAAAGAGCCCT
CTGGCATAGTGGCCATTCCTTTGTGGGAGACATTGCTACTCAGGTGTTTCCTTGGCATCC
TGCTGGAGAATGAACTAAATGAAAAATAGAAAAAATCGTGCTTAGCGCAACTAAGCACTG
TATGTATAATTGAACCTCAGACTACCTCAGGTGTAAGAGATTTCAAGATGCTCTGGTTTC
TGCCTCACTAATAATCTGGTATTTATTTGAATGTTTCCTCCCCTTGACAATTTCTCTTCT
CTCCGGTTTTGAGTTAAAAAAGACAGGACTGAGGCATAAGCTGTTCAGCTATTCTCATCA
AGCCTTCAGAGACTCAGCATTTGAAGGGGGCCGGGTGCTGCTTATCGCCCAAGTACCCAC
CAGGGGGTAAATTATGCCAGGAAGCTGCCAGGATGCACAGCTGTCAGAGGAGTAGCTGCG
CTCCCCATGTTAGCCGTGAAAAGCAATCATAGGAAGAAATTGGTGGGGGGCAGGAAGGCA
GTCTTTGAGTAACTGAGATCATCATTAAGTGATTAATCTGTAAGGTCTGATGCTGCCACC
CCATTCTCCTGTTCTTTCCTAGCACCTTGGAACATTTCAAGAGGTGGCTCCAGCCAGATA
AAGTAGCCATCAGTACGGAGGAGGTCCAGTATCTGATTCCTCCAGAGTCACAGGTGGAGA
AGCCATCGGCCGGGGAGGAGCCAGCAGCGGCGGAACAGTAAATTACAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|40556292|ref|NP_955014.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|40556292|ref|NP_955014.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               672-781, + strand, RNAz p=0.793704

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               672-781, + strand, RNAz p=0.793704

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               5-284, gnl|bosTau2|chr10 (27155967-27155689)
               

               
               5-284, gnl|Hg17|chr15 (38634549-38634268)
               

               
               5-284, gnl|Mm7|chr2 (118761068-118760821)
               


               
               490-1008, gnl|bosTau2|chr10 (27155049-27154529)
               

               
               490-1008, gnl|Hg17|chr15 (38634005-38633405)
               

               
               490-1008, gnl|Mm7|chr2 (118760389-118759868)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-284, gnl|bosTau2|chr10 (27155967-27155689)
               

               
               5-284, gnl|Hg17|chr15 (38634549-38634268)
               

               
               5-284, gnl|Mm7|chr2 (118761068-118760821)
               


               
               490-1008, gnl|bosTau2|chr10 (27155049-27154529)
               

               
               490-1008, gnl|Hg17|chr15 (38634005-38633405)
               

               
               490-1008, gnl|Mm7|chr2 (118760389-118759868)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	5-284, gnl\|bosTau2\|chr10 (27155967-27155689)
	5-284, gnl\|Hg17\|chr15 (38634549-38634268)
	5-284, gnl\|Mm7\|chr2 (118761068-118760821)

	490-1008, gnl\|bosTau2\|chr10 (27155049-27154529)
	490-1008, gnl\|Hg17\|chr15 (38634005-38633405)
	490-1008, gnl\|Mm7\|chr2 (118760389-118759868)