Ss1.1-Utr1-UTR010058C03.5
|
CTGCGCCAGCGCCGGCTGAGAGGCTGGGGCCGTGGCGGCTCGTGCCGGGTGATGCTAGGC
GGCTCCCTGGGTTGCAGGCTGTTGCGAGGTGTGGGTGGGACTCGCAGGCAGTTCGGGGCG
CGGGGTGTCCGCGAAGGTGGCGCAGCCATGGCGGCGGGGGAGAGCATGGCTCAGCGGATG
GTCTGGGTGGACCTGGAGATGACAGGATTGGACATTGAGAAGGACCAGATTATTGAGATG
GCCTGTCTGATAACTGACTCAGATCTCAACATTTTGGCTGAAGGTCCTAACCTGATTATA
AAACAGCCAGATGAGTTACTGGACAGCATGTCAGATTGGTGTAAGGAGCATCACGGGAAG
TCTGGTCTAACCAAAGCAGTGAAGGAGAGTACAATGACATTGCAGCAGGCAGAGTATGAA
TTTCTGTCCTTTGTACGACAGCAGACTCCTCCGGGGCTCTGTCCACTTGCAGGAAATTCA
GTTCATGCAGATAAGAAGTTTCTTGACAAATACATGCCCCAGTTCATGAAACATCTTCAT
TATAGAATAATTGATGTGAGCACTGTTAAAGAGCTGTGCAGACGCTGGTATCCAGAAGAA
TATGAATTTGCACCAAAGAAGGCTGCTTCTCACAGGGCACTTGATGACATTAGCGAAAGC
ATCAAAGAACTTCAGTTTTACCGAAATAACATCTTCAAGAAAAAAACAGATGAGAAGAAG
AGGAAAATTATAGAAAATGGGGAAAATGAGAAGACTGTGAGTTGATGCCAGTTCTCATGC
TGCCACCACATAGTTCTCTGGAAGCGACTTCTGGTGGTTTTGGTTTTTGTTTTTGTTTTT
TTGGCTCACGCTCATTGCTTGGCAGAGCACCTTCCTTCAGTTAACTTGCAACTCCAGATT
GATTATTCAAGCAGACAGCACCCGAAAATTATTTTTCTCCTAACATGCTGTTTTCATTTA
TGACACAGCAGCTCCTTTGTAAGTACCAGGTCACAGGCATCCCTTGGTACATAATCTGTA
TTTGCTTTTAGACCATTCCTTTTGTTTAAAAAATAATAATAATAAAGCTAGTTCTATTGA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTGCGCCAGCGCCGGCTGAGAGGCTGGGGCCGTGGCGGCTCGTGCCGGGTGATGCTAGGC
GGCTCCCTGGGTTGCAGGCTGTTGCGAGGTGTGGGTGGGACTCGCAGGCAGTTCGGGGCG
CGGGGTGTCCGCGAAGGTGGCGCAGCCATGGCGGCGGGGGAGAGCATGGCTCAGCGGATG
GTCTGGGTGGACCTGGAGATGACAGGATTGGACATTGAGAAGGACCAGATTATTGAGATG
GCCTGTCTGATAACTGACTCAGATCTCAACATTTTGGCTGAAGGTCCTAACCTGATTATA
AAACAGCCAGATGAGTTACTGGACAGCATGTCAGATTGGTGTAAGGAGCATCACGGGAAG
TCTGGTCTAACCAAAGCAGTGAAGGAGAGTACAATGACATTGCAGCAGGCAGAGTATGAA
TTTCTGTCCTTTGTACGACAGCAGACTCCTCCGGGGCTCTGTCCACTTGCAGGAAATTCA
GTTCATGCAGATAAGAAGTTTCTTGACAAATACATGCCCCAGTTCATGAAACATCTTCAT
TATAGAATAATTGATGTGAGCACTGTTAAAGAGCTGTGCAGACGCTGGTATCCAGAAGAA
TATGAATTTGCACCAAAGAAGGCTGCTTCTCACAGGGCACTTGATGACATTAGCGAAAGC
ATCAAAGAACTTCAGTTTTACCGAAATAACATCTTCAAGAAAAAAACAGATGAGAAGAAG
AGGAAAATTATAGAAAATGGGGAAAATGAGAAGACTGTGAGTTGATGCCAGTTCTCATGC
TGCCACCACATAGTTCTCTGGAAGCGACTTCTGGTGGTTTTGGTTTTTGTTTTTGTTTTT
TTGGCTCACGCTCATTGCTTGGCAGAGCACCTTCCTTCAGTTAACTTGCAACTCCAGATT
GATTATTCAAGCAGACAGCACCCGAAAATTATTTTTCTCCTAACATGCTGTTTTCATTTA
TGACACAGCAGCTCCTTTGTAAGTACCAGGTCACAGGCATCCCTTGGTACATAATCTGTA
TTTGCTTTTAGACCATTCCTTTTGTTTAAAAAATAATAATAATAAAGCTAGTTCTATTGA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
1-202, gnl|bosTau2|chr15 (11716727-11716526) |
|
1-202, gnl|Hg17|chr11 (113815410-113815611) |
|
1-202, gnl|Mm7|chr9 (48442371-48442170) |
| |
|
359-482, gnl|bosTau2|chr15 (11711095-11710970) |
|
359-482, gnl|canFam2|chr5 (21934477-21934361) |
|
359-482, gnl|danRer3|chrUn (74452387-74452270) |
|
359-482, gnl|dasNov1|scaffold_11306 (58137-58254) |
|
359-482, gnl|echTel1|scaffold_23569 (783-876) |
|
359-482, gnl|fr1|chrUn (190224524-190224641) |
|
359-482, gnl|galGal2|chr24 (4435506-4435623) |
|
359-482, gnl|hg17|chr11 (113820472-113820589) |
|
359-482, gnl|Hg17|chr11 (113820471-113820596) |
|
359-482, gnl|mm7|chr9 (48436283-48436166) |
|
359-482, gnl|Mm7|chr9 (48436282-48436157) |
|
359-482, gnl|monDom2|scaffold_2 (126268045-126267928) |
|
359-482, gnl|oryCun1|scaffold_197661 (6523-6640) |
|
359-482, gnl|panTro1|chr9 (115825183-115825300) |
|
359-482, gnl|rheMac2|chr14 (112930702-112930819) |
|
359-482, gnl|rn3|chr8 (51773324-51773207) |
|
359-482, gnl|tetNig1|chr7 (1451789-1451674) |
| |
|
634-1080, gnl|bosTau2|chr15 (11706424-11705991) |
|
634-1080, gnl|Hg17|chr11 (113825776-113826203) |
|
634-1080, gnl|Mm7|chr9 (48430715-48430286) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-202, gnl|bosTau2|chr15 (11716727-11716526) |
|
1-202, gnl|Hg17|chr11 (113815410-113815611) |
|
1-202, gnl|Mm7|chr9 (48442371-48442170) |
| |
|
359-482, gnl|bosTau2|chr15 (11711095-11710970) |
|
359-482, gnl|canFam2|chr5 (21934477-21934361) |
|
359-482, gnl|danRer3|chrUn (74452387-74452270) |
|
359-482, gnl|dasNov1|scaffold_11306 (58137-58254) |
|
359-482, gnl|echTel1|scaffold_23569 (783-876) |
|
359-482, gnl|fr1|chrUn (190224524-190224641) |
|
359-482, gnl|galGal2|chr24 (4435506-4435623) |
|
359-482, gnl|hg17|chr11 (113820472-113820589) |
|
359-482, gnl|Hg17|chr11 (113820471-113820596) |
|
359-482, gnl|mm7|chr9 (48436283-48436166) |
|
359-482, gnl|Mm7|chr9 (48436282-48436157) |
|
359-482, gnl|monDom2|scaffold_2 (126268045-126267928) |
|
359-482, gnl|oryCun1|scaffold_197661 (6523-6640) |
|
359-482, gnl|panTro1|chr9 (115825183-115825300) |
|
359-482, gnl|rheMac2|chr14 (112930702-112930819) |
|
359-482, gnl|rn3|chr8 (51773324-51773207) |
|
359-482, gnl|tetNig1|chr7 (1451789-1451674) |
| |
|
634-1080, gnl|bosTau2|chr15 (11706424-11705991) |
|
634-1080, gnl|Hg17|chr11 (113825776-113826203) |
|
634-1080, gnl|Mm7|chr9 (48430715-48430286) |
|
ova (1.54959) |
|
lyg (0.798616) |
|
ret (0.643666) |
|
sug (0.636456) |
|
gul (0.532765) |
|
duo (0.345602) |
|
mcp (0.341297) |
|
spc (0.340097) |
|
mga (0.32041) |
|
lun (0.300978) |
|
fat (0.294855) |
|
ski (0.29347) |
|
spl (0.286369) |
|
pty (0.285429) |
|
pan (0.23596) |
|
mgp (0.230681) |
|
fcc (0.197785) |
|
nep (0.183925) |
|
sag (0.182715) |
|
rec (0.17307) |
|
fco (0.157208) |
|
tbr (0.154178) |
|
eli (0.151814) |
|
liv (0.146284) |
|
csk (0.140746) |
|
che (0.136314) |
|
ssp (0.13552) |
|
ute (0.132784) |
|
cov (0.132153) |
|
thg (0.126791) |
|
bla (0.124347) |
|
ebs (0.118301) |
|
ova (1.54959) |
|
lyg (0.798616) |
|
ret (0.643666) |
|
sug (0.636456) |
|
gul (0.532765) |
|
duo (0.345602) |
|
mcp (0.341297) |
|
spc (0.340097) |
|
mga (0.32041) |
|
lun (0.300978) |
|
fat (0.294855) |
|
ski (0.29347) |
|
spl (0.286369) |
|
pty (0.285429) |
|
pan (0.23596) |
|
mgp (0.230681) |
|
fcc (0.197785) |
|
nep (0.183925) |
|
sag (0.182715) |
|
rec (0.17307) |
|
fco (0.157208) |
|
tbr (0.154178) |
|
eli (0.151814) |
|
liv (0.146284) |
|
csk (0.140746) |
|
che (0.136314) |
|
ssp (0.13552) |
|
ute (0.132784) |
|
cov (0.132153) |
|
thg (0.126791) |
|
bla (0.124347) |
|
ebs (0.118301) |
