Ss1.1-Utr1-UTR010059A06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTAGGCGCCCGCGCGGCTGGGACGTCCCAGCCCCGCTAGGTCCTCCTCGTCCGCCACCC GTGCGCCCAGTCAGCACAGCCAGTCCCGTTCGCCCGGTCCACACTGCCCGCCGGCCGGCC GGTCCCCAACAGCAACCATGGATGCCATCAAGAAGAAGATGCAGATGCTAAAGCTGGACA AGGAGAATGCCATCGACCGTGCTGAGCAGGCGGAGGCTGACAAGAAGCAGGCTGAAGACC GCTGCAAGCAGCTGGAGGAGGAGCAGCAGGCCCTCCAGAAGAAGCTGAAAGGGACGGAGG ATGAGGTGGAAAAGTATTCCGAATCAGTGAAGGATGCCCAGGAGAAACTGGAGCAGGCTG AAAAGAAGGCCACCGACGCCGAGGCAGATGTGGCCTCCCTGAACCGCCGCATTCAGCTAG TAGAGGAGGAGCTGGACCGGGCGCAGGAGCGTCTGGCCACAGCCCTGCAAAAGCTGGAGG AGGCCGAGAAGGCAGCTGATGAGAGTGAAAGAGGAATGAAGGTCATTGAAAACCGAGCCA TGAAGGATGAGGAAAAGATGGAGCTGCAGGAGATGCAGCTGAAGGAGGCCAAGCACATCG CTGAGGATTCAGACCGCAAATATGAGGAGGTGGCCAGGAAGCTGGTGATCCTGGAAGGAG AGCTGGAGCGCTCAGAAGAGAGAGCTGAGGTGGCTGAGAGCCGAGCCAGGCAGCTGGAAG AGGAACTGCGAACCATGGACCAGGCCCTCAAGTCCCTGATGGCCTCAGAGGAGGAGTATT CCACCAAAGAGGATAAATATGAAGAGGAGATCAAACTGCTGGAAGAGAAGCTAAAGGAGG CTGAGACCCGAGCAGAGTTTGCCGAAAGGTCGGTGGCAAAGTTGGAGAAAACCATCGATG ACCTGGAAGACGAAGTCTACGCCCAGAAGATGAAGTACAAGGCCATCAGCGAGGAGCTGG ACAACGCGCTCAATGACATCACCTCCCTCTGAGCCCCTCACAGTGTGGCCCCCTCGGCCC CTTCTCTCCTCTCCTTCCCTTTCTCTCTATGGGGAGGGGGGCAAGCAGAGGAGCAAAAAC TGCCAACATTGCACAGCCTAGGCTGGACGCAGCCTAGGAGAGCCCCTGTCACGTCTGCCA CCCACTCTGGCACTTGCTTCATCCTCCTATATCCACCCACTCCCCCCTCCACTCGCCAGC CTCTCTCACTCTCTGCTGCTTAATAAACTCAACTTGGTCTCTAAAAAAAAAAAAAAAAAA CCAGAGAGCACATCCATCGCCCCCCTCAGAGCACTGGTTCACCGCTGAGACACTGCCTCC TTTGAGCACCCCTAATCTTGTGACCCCTTCCCCACTGAGCTCACCCACAAAGCACCCACT CCGGAAGCCCCTCTGCACAGGCACTCCCACTCTGACTCTCGCTGCTGCATGTGGGCACGT GTAACTGCATCGGCCACCAAGGGCCCTTCTGCAGACCCAGGCATGTCGCTGCCCTGCGAG GGCTCAGCTGCCATTCCAAGATCTAAAGGAATGACTGGAAGGGAAGTGGGGCGGTGAGGT GCAGGGAGGGGCAAGAAGGCTGTGCAAGGTCTGGGATGAAGTCTGGAAAAACACTGGATG CCAGCAACGTGGGGCTTTTGCTACAGGTCTGTTTTCTGCCTTGAGTCTGTCTGTCTGTCT GACACTCCCTTTTCCTGGTTCAGTCTTGCTCTTTCTTCCTGTCTCCAACTCTCTTAAACC TTCTAAAGAAGGAGAGTAAATTCATTTAGGACTCAGGCCTTCCCAAAGCTTTGAGGCGTC CCCCCATCTGTCCTGGTCAGTCCATCATTTGCCCCAGCCACGGGTCCTCAGACCCCTGAG TGCTTGTGACCTCCTGTGCCTCCAACCCACTCCGTGCTTATTTGTCACGCCCCCCGTCCG TACCTCCCCATGTTTCTCCCCTCGTGTCTCCCCTCCCCCTGCTCACGGTTGCTTCCCCTC ACAGAGACCTTGGCCAGTGCCAAGGAGGAGAACGTGGAGATTCACCAGACCCTCGACCAG ACCCTGCTGGAGCTCAACAACCTGTGAGGGCTGGTCCTGCCCTGAGCCAGGCTATAGTTG CCTCCCCAGCCAATAAACCTGTTGGTACCAGCAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTAGGCGCCCGCGCGGCTGGGACGTCCCAGCCCCGCTAGGTCCTCCTCGTCCGCCACCC GTGCGCCCAGTCAGCACAGCCAGTCCCGTTCGCCCGGTCCACACTGCCCGCCGGCCGGCC GGTCCCCAACAGCAACCATGGATGCCATCAAGAAGAAGATGCAGATGCTAAAGCTGGACA AGGAGAATGCCATCGACCGTGCTGAGCAGGCGGAGGCTGACAAGAAGCAGGCTGAAGACC GCTGCAAGCAGCTGGAGGAGGAGCAGCAGGCCCTCCAGAAGAAGCTGAAAGGGACGGAGG ATGAGGTGGAAAAGTATTCCGAATCAGTGAAGGATGCCCAGGAGAAACTGGAGCAGGCTG AAAAGAAGGCCACCGACGCCGAGGCAGATGTGGCCTCCCTGAACCGCCGCATTCAGCTAG TAGAGGAGGAGCTGGACCGGGCGCAGGAGCGTCTGGCCACAGCCCTGCAAAAGCTGGAGG AGGCCGAGAAGGCAGCTGATGAGAGTGAAAGAGGAATGAAGGTCATTGAAAACCGAGCCA TGAAGGATGAGGAAAAGATGGAGCTGCAGGAGATGCAGCTGAAGGAGGCCAAGCACATCG CTGAGGATTCAGACCGCAAATATGAGGAGGTGGCCAGGAAGCTGGTGATCCTGGAAGGAG AGCTGGAGCGCTCAGAAGAGAGAGCTGAGGTGGCTGAGAGCCGAGCCAGGCAGCTGGAAG AGGAACTGCGAACCATGGACCAGGCCCTCAAGTCCCTGATGGCCTCAGAGGAGGAGTATT CCACCAAAGAGGATAAATATGAAGAGGAGATCAAACTGCTGGAAGAGAAGCTAAAGGAGG CTGAGACCCGAGCAGAGTTTGCCGAAAGGTCGGTGGCAAAGTTGGAGAAAACCATCGATG ACCTGGAAGACGAAGTCTACGCCCAGAAGATGAAGTACAAGGCCATCAGCGAGGAGCTGG ACAACGCGCTCAATGACATCACCTCCCTCTGAGCCCCTCACAGTGTGGCCCCCTCGGCCC CTTCTCTCCTCTCCTTCCCTTTCTCTCTATGGGGAGGGGGGCAAGCAGAGGAGCAAAAAC TGCCAACATTGCACAGCCTAGGCTGGACGCAGCCTAGGAGAGCCCCTGTCACGTCTGCCA CCCACTCTGGCACTTGCTTCATCCTCCTATATCCACCCACTCCCCCCTCCACTCGCCAGC CTCTCTCACTCTCTGCTGCTTAATAAACTCAACTTGGTCTCTAAAAAAAAAAAAAAAAAA CCAGAGAGCACATCCATCGCCCCCCTCAGAGCACTGGTTCACCGCTGAGACACTGCCTCC TTTGAGCACCCCTAATCTTGTGACCCCTTCCCCACTGAGCTCACCCACAAAGCACCCACT CCGGAAGCCCCTCTGCACAGGCACTCCCACTCTGACTCTCGCTGCTGCATGTGGGCACGT GTAACTGCATCGGCCACCAAGGGCCCTTCTGCAGACCCAGGCATGTCGCTGCCCTGCGAG GGCTCAGCTGCCATTCCAAGATCTAAAGGAATGACTGGAAGGGAAGTGGGGCGGTGAGGT GCAGGGAGGGGCAAGAAGGCTGTGCAAGGTCTGGGATGAAGTCTGGAAAAACACTGGATG CCAGCAACGTGGGGCTTTTGCTACAGGTCTGTTTTCTGCCTTGAGTCTGTCTGTCTGTCT GACACTCCCTTTTCCTGGTTCAGTCTTGCTCTTTCTTCCTGTCTCCAACTCTCTTAAACC TTCTAAAGAAGGAGAGTAAATTCATTTAGGACTCAGGCCTTCCCAAAGCTTTGAGGCGTC CCCCCATCTGTCCTGGTCAGTCCATCATTTGCCCCAGCCACGGGTCCTCAGACCCCTGAG TGCTTGTGACCTCCTGTGCCTCCAACCCACTCCGTGCTTATTTGTCACGCCCCCCGTCCG TACCTCCCCATGTTTCTCCCCTCGTGTCTCCCCTCCCCCTGCTCACGGTTGCTTCCCCTC ACAGAGACCTTGGCCAGTGCCAAGGAGGAGAACGTGGAGATTCACCAGACCCTCGACCAG ACCCTGCTGGAGCTCAACAACCTGTGAGGGCTGGTCCTGCCCTGAGCCAGGCTATAGTTG CCTCCCCAGCCAATAAACCTGTTGGTACCAGCAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 117-235, - strand, RNAz p=0.71041 | |
| 338-511, + strand, RNAz p=0.700491 | |
| 410-511, + strand, RNAz p=0.6368 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 117-235, - strand, RNAz p=0.71041 | |
| 338-511, + strand, RNAz p=0.700491 | |
| 410-511, + strand, RNAz p=0.6368 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-258, gnl|bosTau2|chr8 (28429587-28429330) | |
| 1-258, gnl|Hg17|chr9 (35679951-35679694) | |
| 1-258, gnl|Mm7|chr4 (43537305-43537051) | |
| 117-251, gnl|bosTau2|chr10 (30883656-30883789) | |
| 117-251, gnl|Hg17|chr15 (61122062-61122195) | |
| 117-251, gnl|Mm7|chr9 (67080622-67080489) | |
| 338-910, gnl|bosTau2|chr29 (40475376-40474804) | |
| 338-910, gnl|Hg17|chr16 (51246809-51247381) | |
| 338-910, gnl|Mm7|chr14 (107719545-107720117) | |
| 373-511, gnl|bosTau2|chr10 (30898620-30898758) | |
| 373-511, gnl|canFam2|chr30 (30647026-30647180) | |
| 373-511, gnl|danRer3|chr18 (46365359-46365513) | |
| 373-511, gnl|dasNov1|scaffold_7454 (58860-59015) | |
| 373-511, gnl|echTel1|scaffold_288449 (565-719) | |
| 373-511, gnl|fr1|chrUn (201006527-201006678) | |
| 373-511, gnl|galGal2|chr10 (4961794-4961651) | |
| 373-511, gnl|hg17|chr15 (61136233-61136387) | |
| 373-511, gnl|Hg17|chr15 (61136232-61136370) | |
| 373-511, gnl|loxAfr1|scaffold_46717 (13836-13991) | |
| 373-511, gnl|mm7|chr9 (67067603-67067450) | |
| 373-511, gnl|Mm7|chr9 (67067602-67067464) | |
| 373-511, gnl|monDom2|scaffold_12 (50774535-50774381) | |
| 373-511, gnl|oryCun1|scaffold_183267 (44066-43912) | |
| 373-511, gnl|panTro1|chr16 (61592303-61592457) | |
| 373-511, gnl|rheMac2|chr7 (41442060-41442214) | |
| 373-511, gnl|rn3|chr8 (71364024-71363870) | |
| 373-511, gnl|tetNig1|chr5 (2575381-2575243) | |
| 373-511, gnl|xenTro1|scaffold_62 (1109650-1109793) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-258, gnl|bosTau2|chr8 (28429587-28429330) | |
| 1-258, gnl|Hg17|chr9 (35679951-35679694) | |
| 1-258, gnl|Mm7|chr4 (43537305-43537051) | |
| 117-251, gnl|bosTau2|chr10 (30883656-30883789) | |
| 117-251, gnl|Hg17|chr15 (61122062-61122195) | |
| 117-251, gnl|Mm7|chr9 (67080622-67080489) | |
| 338-910, gnl|bosTau2|chr29 (40475376-40474804) | |
| 338-910, gnl|Hg17|chr16 (51246809-51247381) | |
| 338-910, gnl|Mm7|chr14 (107719545-107720117) | |
| 373-511, gnl|bosTau2|chr10 (30898620-30898758) | |
| 373-511, gnl|canFam2|chr30 (30647026-30647180) | |
| 373-511, gnl|danRer3|chr18 (46365359-46365513) | |
| 373-511, gnl|dasNov1|scaffold_7454 (58860-59015) | |
| 373-511, gnl|echTel1|scaffold_288449 (565-719) | |
| 373-511, gnl|fr1|chrUn (201006527-201006678) | |
| 373-511, gnl|galGal2|chr10 (4961794-4961651) | |
| 373-511, gnl|hg17|chr15 (61136233-61136387) | |
| 373-511, gnl|Hg17|chr15 (61136232-61136370) | |
| 373-511, gnl|loxAfr1|scaffold_46717 (13836-13991) | |
| 373-511, gnl|mm7|chr9 (67067603-67067450) | |
| 373-511, gnl|Mm7|chr9 (67067602-67067464) | |
| 373-511, gnl|monDom2|scaffold_12 (50774535-50774381) | |
| 373-511, gnl|oryCun1|scaffold_183267 (44066-43912) | |
| 373-511, gnl|panTro1|chr16 (61592303-61592457) | |
| 373-511, gnl|rheMac2|chr7 (41442060-41442214) | |
| 373-511, gnl|rn3|chr8 (71364024-71363870) | |
| 373-511, gnl|tetNig1|chr5 (2575381-2575243) | |
| 373-511, gnl|xenTro1|scaffold_62 (1109650-1109793) |
| Expressed library(ies): 55 entry(ies) | More info |
| Expressed library(ies): 55 entry(ies) | Help | Less info |
| mas (10.7256) | |
| nms (10.2652) | |
| ton (4.212) | |
| ssp (4.20111) | |
| ldo (3.8801) | |
| nep (3.12672) | |
| ese (2.78305) | |
| cut (2.71878) | |
| sto (2.69736) | |
| bla (2.48694) | |
| aor (1.95274) | |
| che (1.9084) | |
| ste (1.48729) | |
| eru (1.44058) | |
| cov (1.05722) | |
| cst (0.980255) | |
| hlv (0.974795) | |
| gul (0.887942) | |
| pty (0.856287) | |
| eye (0.852515) | |
| tbr (0.770891) | |
| nca (0.684369) | |
| sme (0.610874) | |
| col (0.585023) | |
| nlu (0.575043) | |
| jca (0.569801) | |
| cmu (0.55918) | |
| lyg (0.532411) | |
| nco (0.485201) | |
| isp (0.451128) | |
| ute (0.398353) | |
| sag (0.36543) | |
| vin (0.332557) | |
| csp (0.322373) | |
| ctl (0.306138) | |
| eje (0.296501) | |
| nmm (0.265604) | |
| sug (0.254582) | |
| mgp (0.230681) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| nje (0.16592) | |
| cki (0.165235) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| csk (0.140746) | |
| pla (0.133672) | |
| thg (0.126791) | |
| eep (0.122564) | |
| cly (0.120642) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jej (0.0989218) |
| Expressed library(ies): 55 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (10.7256) | |
| nms (10.2652) | |
| ton (4.212) | |
| ssp (4.20111) | |
| ldo (3.8801) | |
| nep (3.12672) | |
| ese (2.78305) | |
| cut (2.71878) | |
| sto (2.69736) | |
| bla (2.48694) | |
| aor (1.95274) | |
| che (1.9084) | |
| ste (1.48729) | |
| eru (1.44058) | |
| cov (1.05722) | |
| cst (0.980255) | |
| hlv (0.974795) | |
| gul (0.887942) | |
| pty (0.856287) | |
| eye (0.852515) | |
| tbr (0.770891) | |
| nca (0.684369) | |
| sme (0.610874) | |
| col (0.585023) | |
| nlu (0.575043) | |
| jca (0.569801) | |
| cmu (0.55918) | |
| lyg (0.532411) | |
| nco (0.485201) | |
| isp (0.451128) | |
| ute (0.398353) | |
| sag (0.36543) | |
| vin (0.332557) | |
| csp (0.322373) | |
| ctl (0.306138) | |
| eje (0.296501) | |
| nmm (0.265604) | |
| sug (0.254582) | |
| mgp (0.230681) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| nje (0.16592) | |
| cki (0.165235) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| csk (0.140746) | |
| pla (0.133672) | |
| thg (0.126791) | |
| eep (0.122564) | |
| cly (0.120642) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jej (0.0989218) |