Ss1.1-Utr1-UTR010059B08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTACAAATGGCTGCAACAACCTGGGAATCATCACGGACCACTCACCCGAACCCTCCTTCA TCAACCCCCTGAGCGCCCTGCAGTCCATCATGAACACCCACCTGGGCAAAGTGTCCAGGC CCGTGAGCCCCTCACTGGACCCGCTGGCCATGCTGTACAAGATCAGCACCAGCATGCTGG ACAAGCCGGCCTACCCTGCCATGCCCGCCAAGCCTCCCGGCGCCCTAGACCGCTACTACT ACGAGAACAGCGACCAGCCCATCGACCTGACCAAGTCCAAGAGCAAGCCCCTGGTCTCGG GCGCAGCCGACGGTGTGGCCTCGCCACTCCGGGAGAGCGCGCTCATGGACATCTCGGACA TGGTGAAGAACCTCACTGGCCGGCTGACCCCCAAGTCCTCCACGCCCTCCACCGTGTCCG AGAAGTCAGATGCCGATGGCAGCAGCTTCGAGGAGGCGCTGGACGAGCTGTCGCCCGTTC ACAAGAGGAAAGGGCGCCAGTCCAACTGGAACCCCCAGCACCTGCTCATCCTGCAGGCCC AGTTTGCCTCAAGCCTGCGGGAGACGCCGGAGGGTAAGTACATCATGTCAGACCTGGGCC CGCAGGAACGGGTGCACATCTCTAAGTTCACCGGGCTGTCCATGACCACCATCAGCCACT GGCTGGCCAACGTCAAGTACCAGCTGCGGAGGACAGGGGGGACCAAGTTCCTGAAGAACC TAGACACAGGGCATCCTGTTTTCTTTTGCAACGATTGTGCCTCTCAGTTCAGAACTGCTT CCACATACATCAATCACCTAGAGACACACTTAGGCTTCAGCTTGAAGGATCTCTCCAAGC TGCCCCTGAACCAGATTCAAGAGCAGCAGAATGTTTCCAAGGTCCTGGCAAACAAAGCTC TGGGCCCGGTGGGGGCCTCCGAGGAGGATCTGGGCTCCACATTCCAGTGCAAGCTCTGCA ACCGGACTTTCGCGAGCAAGCACGCAGTCAAACTGCACCTTAGCAAGACACACGGCAAGT CCCCCGAGGACCACCTGATCTACGTGACAGAGCTGGAGAAACAGTAGCCCAGGGCCGTGC GGCCCTTGGCGCATTGCACTAAACGTCCTCGTACTGCACTAGGCCCGGCCTGAGCCTCCG AAATCAGCCTGCCCTTTGTTGCCGACTGCCTGTCTGGACCTTGGTTTTTCTTACACACAT TTTGTAGTTATATTTATATGCTCTTCGTCCGATTGTGCATGTTCCTTTTCTTTTTCCGTG AGTCAAAGTCTGACCTTTATTTTCAACATCTGTTCTCGATGTTCAGCTCTCTTTTGTAGG AAATAGTGGGGCACACAACTCAGAGACATTTATTTAGCAGGAAAGAAAGACACAAATAAC AATGATAAAAGACATCCTAAAATTACAAAGTTGCCATGACAATAAAGGTCATAGAACCTC CTAGTGTCAAATTTAACCCTTTGAGGACTGTAATCGCATTTCTGTGCCTTTCACTCAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTACAAATGGCTGCAACAACCTGGGAATCATCACGGACCACTCACCCGAACCCTCCTTCA TCAACCCCCTGAGCGCCCTGCAGTCCATCATGAACACCCACCTGGGCAAAGTGTCCAGGC CCGTGAGCCCCTCACTGGACCCGCTGGCCATGCTGTACAAGATCAGCACCAGCATGCTGG ACAAGCCGGCCTACCCTGCCATGCCCGCCAAGCCTCCCGGCGCCCTAGACCGCTACTACT ACGAGAACAGCGACCAGCCCATCGACCTGACCAAGTCCAAGAGCAAGCCCCTGGTCTCGG GCGCAGCCGACGGTGTGGCCTCGCCACTCCGGGAGAGCGCGCTCATGGACATCTCGGACA TGGTGAAGAACCTCACTGGCCGGCTGACCCCCAAGTCCTCCACGCCCTCCACCGTGTCCG AGAAGTCAGATGCCGATGGCAGCAGCTTCGAGGAGGCGCTGGACGAGCTGTCGCCCGTTC ACAAGAGGAAAGGGCGCCAGTCCAACTGGAACCCCCAGCACCTGCTCATCCTGCAGGCCC AGTTTGCCTCAAGCCTGCGGGAGACGCCGGAGGGTAAGTACATCATGTCAGACCTGGGCC CGCAGGAACGGGTGCACATCTCTAAGTTCACCGGGCTGTCCATGACCACCATCAGCCACT GGCTGGCCAACGTCAAGTACCAGCTGCGGAGGACAGGGGGGACCAAGTTCCTGAAGAACC TAGACACAGGGCATCCTGTTTTCTTTTGCAACGATTGTGCCTCTCAGTTCAGAACTGCTT CCACATACATCAATCACCTAGAGACACACTTAGGCTTCAGCTTGAAGGATCTCTCCAAGC TGCCCCTGAACCAGATTCAAGAGCAGCAGAATGTTTCCAAGGTCCTGGCAAACAAAGCTC TGGGCCCGGTGGGGGCCTCCGAGGAGGATCTGGGCTCCACATTCCAGTGCAAGCTCTGCA ACCGGACTTTCGCGAGCAAGCACGCAGTCAAACTGCACCTTAGCAAGACACACGGCAAGT CCCCCGAGGACCACCTGATCTACGTGACAGAGCTGGAGAAACAGTAGCCCAGGGCCGTGC GGCCCTTGGCGCATTGCACTAAACGTCCTCGTACTGCACTAGGCCCGGCCTGAGCCTCCG AAATCAGCCTGCCCTTTGTTGCCGACTGCCTGTCTGGACCTTGGTTTTTCTTACACACAT TTTGTAGTTATATTTATATGCTCTTCGTCCGATTGTGCATGTTCCTTTTCTTTTTCCGTG AGTCAAAGTCTGACCTTTATTTTCAACATCTGTTCTCGATGTTCAGCTCTCTTTTGTAGG AAATAGTGGGGCACACAACTCAGAGACATTTATTTAGCAGGAAAGAAAGACACAAATAAC AATGATAAAAGACATCCTAAAATTACAAAGTTGCCATGACAATAAAGGTCATAGAACCTC CTAGTGTCAAATTTAACCCTTTGAGGACTGTAATCGCATTTCTGTGCCTTTCACTCAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 82-201, - strand, RNAz p=0.859738 | |
| 442-561, - strand, RNAz p=0.703074 | |
| 878-997, - strand, RNAz p=0.535548 | |
| 911-1004, - strand, RNAz p=0.916404 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 82-201, - strand, RNAz p=0.859738 | |
| 442-561, - strand, RNAz p=0.703074 | |
| 878-997, - strand, RNAz p=0.535548 | |
| 911-1004, - strand, RNAz p=0.916404 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 3-1500, gnl|bosTau2|chr24 (3539090-3537598) | |
| 3-1500, gnl|Hg17|chr18 (71128520-71130014) | |
| 3-1500, gnl|Mm7|chr18 (84363227-84361710) | |
| 13-282, gnl|bosTau2|chr18 (34910480-34910761) | |
| 13-282, gnl|canFam2|chr1 (123369744-123368531) | |
| 13-282, gnl|danRer3|chr7 (37564121-37565418) | |
| 13-282, gnl|dasNov1|scaffold_3665 (58329-59543) | |
| 13-282, gnl|echTel1|scaffold_305443 (6388-5187) | |
| 13-282, gnl|fr1|chrUn (172574184-172575553) | |
| 13-282, gnl|galGal2|chr11 (9425062-9426272) | |
| 13-282, gnl|hg17|chr19 (36459273-36460486) | |
| 13-282, gnl|Hg17|chr19 (36460431-36460150) | |
| 13-282, gnl|loxAfr1|scaffold_49711 (7781-6569) | |
| 13-282, gnl|mm7|chr7 (33663011-33661797) | |
| 13-282, gnl|Mm7|chr7 (33661850-33662131) | |
| 13-282, gnl|monDom2|scaffold_35 (5928779-5927569) | |
| 13-282, gnl|oryCun1|scaffold_198133 (7527-8741) | |
| 13-282, gnl|panTro1|chr20 (32949379-32950592) | |
| 13-282, gnl|rheMac2|chr19 (37783295-37784508) | |
| 13-282, gnl|rn3|chr1 (89312798-89311581) | |
| 13-282, gnl|tetNig1|chrUn_random (54360149-54358868) | |
| 13-282, gnl|xenTro1|scaffold_83 (1501341-1500117) | |
| 320-1068, gnl|bosTau2|chr18 (34910880-34911619) | |
| 320-1068, gnl|canFam2|chr1 (123369744-123368531) | |
| 320-1068, gnl|danRer3|chr7 (37564121-37565418) | |
| 320-1068, gnl|dasNov1|scaffold_3665 (58329-59543) | |
| 320-1068, gnl|echTel1|scaffold_305443 (6388-5187) | |
| 320-1068, gnl|fr1|chrUn (172574184-172575553) | |
| 320-1068, gnl|galGal2|chr11 (9425062-9426272) | |
| 320-1068, gnl|hg17|chr19 (36459273-36460486) | |
| 320-1068, gnl|Hg17|chr19 (36460031-36459292) | |
| 320-1068, gnl|loxAfr1|scaffold_49711 (7781-6569) | |
| 320-1068, gnl|mm7|chr7 (33663011-33661797) | |
| 320-1068, gnl|Mm7|chr7 (33662250-33662989) | |
| 320-1068, gnl|monDom2|scaffold_35 (5928779-5927569) | |
| 320-1068, gnl|oryCun1|scaffold_198133 (7527-8741) | |
| 320-1068, gnl|panTro1|chr20 (32949379-32950592) | |
| 320-1068, gnl|rheMac2|chr19 (37783295-37784508) | |
| 320-1068, gnl|rn3|chr1 (89312798-89311581) | |
| 320-1068, gnl|tetNig1|chrUn_random (54360149-54358868) | |
| 320-1068, gnl|xenTro1|scaffold_83 (1501341-1500117) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-1500, gnl|bosTau2|chr24 (3539090-3537598) | |
| 3-1500, gnl|Hg17|chr18 (71128520-71130014) | |
| 3-1500, gnl|Mm7|chr18 (84363227-84361710) | |
| 13-282, gnl|bosTau2|chr18 (34910480-34910761) | |
| 13-282, gnl|canFam2|chr1 (123369744-123368531) | |
| 13-282, gnl|danRer3|chr7 (37564121-37565418) | |
| 13-282, gnl|dasNov1|scaffold_3665 (58329-59543) | |
| 13-282, gnl|echTel1|scaffold_305443 (6388-5187) | |
| 13-282, gnl|fr1|chrUn (172574184-172575553) | |
| 13-282, gnl|galGal2|chr11 (9425062-9426272) | |
| 13-282, gnl|hg17|chr19 (36459273-36460486) | |
| 13-282, gnl|Hg17|chr19 (36460431-36460150) | |
| 13-282, gnl|loxAfr1|scaffold_49711 (7781-6569) | |
| 13-282, gnl|mm7|chr7 (33663011-33661797) | |
| 13-282, gnl|Mm7|chr7 (33661850-33662131) | |
| 13-282, gnl|monDom2|scaffold_35 (5928779-5927569) | |
| 13-282, gnl|oryCun1|scaffold_198133 (7527-8741) | |
| 13-282, gnl|panTro1|chr20 (32949379-32950592) | |
| 13-282, gnl|rheMac2|chr19 (37783295-37784508) | |
| 13-282, gnl|rn3|chr1 (89312798-89311581) | |
| 13-282, gnl|tetNig1|chrUn_random (54360149-54358868) | |
| 13-282, gnl|xenTro1|scaffold_83 (1501341-1500117) | |
| 320-1068, gnl|bosTau2|chr18 (34910880-34911619) | |
| 320-1068, gnl|canFam2|chr1 (123369744-123368531) | |
| 320-1068, gnl|danRer3|chr7 (37564121-37565418) | |
| 320-1068, gnl|dasNov1|scaffold_3665 (58329-59543) | |
| 320-1068, gnl|echTel1|scaffold_305443 (6388-5187) | |
| 320-1068, gnl|fr1|chrUn (172574184-172575553) | |
| 320-1068, gnl|galGal2|chr11 (9425062-9426272) | |
| 320-1068, gnl|hg17|chr19 (36459273-36460486) | |
| 320-1068, gnl|Hg17|chr19 (36460031-36459292) | |
| 320-1068, gnl|loxAfr1|scaffold_49711 (7781-6569) | |
| 320-1068, gnl|mm7|chr7 (33663011-33661797) | |
| 320-1068, gnl|Mm7|chr7 (33662250-33662989) | |
| 320-1068, gnl|monDom2|scaffold_35 (5928779-5927569) | |
| 320-1068, gnl|oryCun1|scaffold_198133 (7527-8741) | |
| 320-1068, gnl|panTro1|chr20 (32949379-32950592) | |
| 320-1068, gnl|rheMac2|chr19 (37783295-37784508) | |
| 320-1068, gnl|rn3|chr1 (89312798-89311581) | |
| 320-1068, gnl|tetNig1|chrUn_random (54360149-54358868) | |
| 320-1068, gnl|xenTro1|scaffold_83 (1501341-1500117) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.169924) | |
| eru (0.120048) | |
| cty (0.10408) |