Ss1.1-Utr1-UTR010059D02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TACTGGGCACGTGGGGCCGGGCGGAGAGAGGGACCGCCAAGAGTAGTGAGCCCTTCCGCG GGAATGGGTGAATTTAAGGTCCATCGAGTACGTTTCTTTAATTATGTTCCATCAGGGATC CGTTGTGTGGCTTACAATAACCAGTCGAACAGATTGGCTGTTTCACGAACAGATGGCACT GTAGAAATTTATAATTTGTCAGCAAACTACTTTCAGGAGAAATTTTTCCCAGGTCATGAG TCTCGGGCTACAGAAGCTCTGTGCTGGGCAAAAGGACAACGGCTGTTTAGTGCCGGACTC AACGGAGAGATTATTGAGTATGATTTGCAGGCCTTAAATGTCAAGTATGCTGTGGATGCC TTTGGAGGACCCATTTGGAGCATGGCTGCCAGCCCCAGTGGCTCCCAACTTTTGGTTGGC TGTGAAGATGGATCTGTGAAACTATTTCAGATCACCCCAGACAAAATCCAATTTGAAAGA AATTTCGATCGGCAGAAAAGTCGAATCCTGAGTCTCAGCTGGCATCCGTCTGGTACCCAC ATTGCAGCTGGTTCCATAGACTACATTAGTGTGTTTGATGTCAAATCAGGGAGCGCTATT CATAAGATGCTTGTGGATAGGCAGTATATGGGTGTGTCTAAGCGGAAGTGTATCATATGG GGCGTGGCCTTCTTGTCTGATGGCACGGTCATAAGTGTGGACTCTGCTGGGAAGGTGCAG TTCTGGGACTCAGCAACTGGGACACTCGTGAAGAACCATCTCATCGCAAAATGCTGATGT GCAGTCCCATTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TACTGGGCACGTGGGGCCGGGCGGAGAGAGGGACCGCCAAGAGTAGTGAGCCCTTCCGCG GGAATGGGTGAATTTAAGGTCCATCGAGTACGTTTCTTTAATTATGTTCCATCAGGGATC CGTTGTGTGGCTTACAATAACCAGTCGAACAGATTGGCTGTTTCACGAACAGATGGCACT GTAGAAATTTATAATTTGTCAGCAAACTACTTTCAGGAGAAATTTTTCCCAGGTCATGAG TCTCGGGCTACAGAAGCTCTGTGCTGGGCAAAAGGACAACGGCTGTTTAGTGCCGGACTC AACGGAGAGATTATTGAGTATGATTTGCAGGCCTTAAATGTCAAGTATGCTGTGGATGCC TTTGGAGGACCCATTTGGAGCATGGCTGCCAGCCCCAGTGGCTCCCAACTTTTGGTTGGC TGTGAAGATGGATCTGTGAAACTATTTCAGATCACCCCAGACAAAATCCAATTTGAAAGA AATTTCGATCGGCAGAAAAGTCGAATCCTGAGTCTCAGCTGGCATCCGTCTGGTACCCAC ATTGCAGCTGGTTCCATAGACTACATTAGTGTGTTTGATGTCAAATCAGGGAGCGCTATT CATAAGATGCTTGTGGATAGGCAGTATATGGGTGTGTCTAAGCGGAAGTGTATCATATGG GGCGTGGCCTTCTTGTCTGATGGCACGGTCATAAGTGTGGACTCTGCTGGGAAGGTGCAG TTCTGGGACTCAGCAACTGGGACACTCGTGAAGAACCATCTCATCGCAAAATGCTGATGT GCAGTCCCATTT |
| Aligned organism(s): 64 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
| 61-222, gnl|bosTau2|chr18 (13988360-13988199) | |
| 61-222, gnl|canFam2|chr5 (83516853-83516730) | |
| 61-222, gnl|canFam2|chr5 (83516911-83516703) | |
| 61-222, gnl|danRer3|chr23 (47252175-47251988) | |
| 61-222, gnl|dasNov1|scaffold_169399 (706-829) | |
| 61-222, gnl|dasNov1|scaffold_169399 (653-848) | |
| 61-222, gnl|echTel1|scaffold_314479 (128396-128273) | |
| 61-222, gnl|echTel1|scaffold_314479 (128454-128246) | |
| 61-222, gnl|fr1|chrUn (302813294-302813096) | |
| 61-222, gnl|hg17|chr1 (159917938-159918054) | |
| 61-222, gnl|hg17|chr16 (67724845-67725048) | |
| 61-222, gnl|Hg17|chr16 (67724861-67725022) | |
| 61-222, gnl|loxAfr1|scaffold_47740 (16228-16023) | |
| 61-222, gnl|loxAfr1|scaffold_94736 (1640-1797) | |
| 61-222, gnl|mm7|chr8 (105494764-105494887) | |
| 61-222, gnl|mm7|chr8 (105494712-105494915) | |
| 61-222, gnl|Mm7|chr8 (105494727-105494888) | |
| 61-222, gnl|monDom2|scaffold_23 (5120348-5120148) | |
| 61-222, gnl|oryCun1|scaffold_163735 (16235-16112) | |
| 61-222, gnl|oryCun1|scaffold_163735 (16284-16085) | |
| 61-222, gnl|panTro1|chr1 (142125716-142125832) | |
| 61-222, gnl|panTro1|chr18 (62054327-62054530) | |
| 61-222, gnl|rheMac2|chr1 (193125704-193125820) | |
| 61-222, gnl|rheMac2|chr20 (67508249-67508452) | |
| 61-222, gnl|rn3|chr15 (19206603-19206492) | |
| 61-222, gnl|rn3|chr19 (36747793-36747995) | |
| 61-222, gnl|tetNig1|chrUn_random (74389424-74389590) | |
| 223-416, gnl|bosTau2|chr18 (13986005-13985812) | |
| 223-416, gnl|canFam2|chr5 (83513160-83512969) | |
| 223-416, gnl|danRer3|chr23 (47251198-47251018) | |
| 223-416, gnl|dasNov1|scaffold_169399 (3742-3933) | |
| 223-416, gnl|echTel1|scaffold_314479 (126047-125858) | |
| 223-416, gnl|fr1|chrUn (302813044-302812850) | |
| 223-416, gnl|galGal2|chr11_random (109069-109264) | |
| 223-416, gnl|hg17|chr16 (67728083-67728274) | |
| 223-416, gnl|Hg17|chr16 (67728100-67728293) | |
| 223-416, gnl|loxAfr1|scaffold_47740 (13072-12880) | |
| 223-416, gnl|mm7|chr8 (105498180-105498371) | |
| 223-416, gnl|Mm7|chr8 (105498197-105498390) | |
| 223-416, gnl|monDom2|scaffold_23 (5113539-5113335) | |
| 223-416, gnl|oryCun1|scaffold_163735 (12981-12790) | |
| 223-416, gnl|panTro1|chr18 (62057540-62057731) | |
| 223-416, gnl|rheMac2|chr20 (67511761-67511952) | |
| 223-416, gnl|rn3|chr19 (36750979-36751173) | |
| 223-416, gnl|tetNig1|chrUn_random (74389681-74389852) | |
| 587-787, gnl|bosTau2|chr18 (13978408-13978209) | |
| 587-787, gnl|canFam2|chr5 (83506195-83505991) | |
| 587-787, gnl|danRer3|chr23 (47248647-47248449) | |
| 587-787, gnl|dasNov1|scaffold_171081 (900-696) | |
| 587-787, gnl|echTel1|scaffold_314479 (116459-116255) | |
| 587-787, gnl|fr1|chrUn (302812385-302812186) | |
| 587-787, gnl|galGal2|chr11_random (109908-110091) | |
| 587-787, gnl|hg17|chr16 (67734561-67734765) | |
| 587-787, gnl|Hg17|chr16 (67734579-67734778) | |
| 587-787, gnl|loxAfr1|scaffold_47740 (4205-4002) | |
| 587-787, gnl|mm7|chr8 (105504349-105504553) | |
| 587-787, gnl|Mm7|chr8 (105504367-105504566) | |
| 587-787, gnl|monDom2|scaffold_23 (5110435-5110235) | |
| 587-787, gnl|oryCun1|scaffold_163735 (5827-5623) | |
| 587-787, gnl|panTro1|chr18 (62064051-62064255) | |
| 587-787, gnl|rheMac2|chr20 (67519914-67520118) | |
| 587-787, gnl|rn3|chr19 (36757803-36758007) | |
| 587-787, gnl|tetNig1|chrUn_random (74390277-74390467) | |
| 587-787, gnl|xenTro1|scaffold_132 (1480288-1480083) |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 61-222, gnl|bosTau2|chr18 (13988360-13988199) | |
| 61-222, gnl|canFam2|chr5 (83516853-83516730) | |
| 61-222, gnl|canFam2|chr5 (83516911-83516703) | |
| 61-222, gnl|danRer3|chr23 (47252175-47251988) | |
| 61-222, gnl|dasNov1|scaffold_169399 (706-829) | |
| 61-222, gnl|dasNov1|scaffold_169399 (653-848) | |
| 61-222, gnl|echTel1|scaffold_314479 (128396-128273) | |
| 61-222, gnl|echTel1|scaffold_314479 (128454-128246) | |
| 61-222, gnl|fr1|chrUn (302813294-302813096) | |
| 61-222, gnl|hg17|chr1 (159917938-159918054) | |
| 61-222, gnl|hg17|chr16 (67724845-67725048) | |
| 61-222, gnl|Hg17|chr16 (67724861-67725022) | |
| 61-222, gnl|loxAfr1|scaffold_47740 (16228-16023) | |
| 61-222, gnl|loxAfr1|scaffold_94736 (1640-1797) | |
| 61-222, gnl|mm7|chr8 (105494764-105494887) | |
| 61-222, gnl|mm7|chr8 (105494712-105494915) | |
| 61-222, gnl|Mm7|chr8 (105494727-105494888) | |
| 61-222, gnl|monDom2|scaffold_23 (5120348-5120148) | |
| 61-222, gnl|oryCun1|scaffold_163735 (16235-16112) | |
| 61-222, gnl|oryCun1|scaffold_163735 (16284-16085) | |
| 61-222, gnl|panTro1|chr1 (142125716-142125832) | |
| 61-222, gnl|panTro1|chr18 (62054327-62054530) | |
| 61-222, gnl|rheMac2|chr1 (193125704-193125820) | |
| 61-222, gnl|rheMac2|chr20 (67508249-67508452) | |
| 61-222, gnl|rn3|chr15 (19206603-19206492) | |
| 61-222, gnl|rn3|chr19 (36747793-36747995) | |
| 61-222, gnl|tetNig1|chrUn_random (74389424-74389590) | |
| 223-416, gnl|bosTau2|chr18 (13986005-13985812) | |
| 223-416, gnl|canFam2|chr5 (83513160-83512969) | |
| 223-416, gnl|danRer3|chr23 (47251198-47251018) | |
| 223-416, gnl|dasNov1|scaffold_169399 (3742-3933) | |
| 223-416, gnl|echTel1|scaffold_314479 (126047-125858) | |
| 223-416, gnl|fr1|chrUn (302813044-302812850) | |
| 223-416, gnl|galGal2|chr11_random (109069-109264) | |
| 223-416, gnl|hg17|chr16 (67728083-67728274) | |
| 223-416, gnl|Hg17|chr16 (67728100-67728293) | |
| 223-416, gnl|loxAfr1|scaffold_47740 (13072-12880) | |
| 223-416, gnl|mm7|chr8 (105498180-105498371) | |
| 223-416, gnl|Mm7|chr8 (105498197-105498390) | |
| 223-416, gnl|monDom2|scaffold_23 (5113539-5113335) | |
| 223-416, gnl|oryCun1|scaffold_163735 (12981-12790) | |
| 223-416, gnl|panTro1|chr18 (62057540-62057731) | |
| 223-416, gnl|rheMac2|chr20 (67511761-67511952) | |
| 223-416, gnl|rn3|chr19 (36750979-36751173) | |
| 223-416, gnl|tetNig1|chrUn_random (74389681-74389852) | |
| 587-787, gnl|bosTau2|chr18 (13978408-13978209) | |
| 587-787, gnl|canFam2|chr5 (83506195-83505991) | |
| 587-787, gnl|danRer3|chr23 (47248647-47248449) | |
| 587-787, gnl|dasNov1|scaffold_171081 (900-696) | |
| 587-787, gnl|echTel1|scaffold_314479 (116459-116255) | |
| 587-787, gnl|fr1|chrUn (302812385-302812186) | |
| 587-787, gnl|galGal2|chr11_random (109908-110091) | |
| 587-787, gnl|hg17|chr16 (67734561-67734765) | |
| 587-787, gnl|Hg17|chr16 (67734579-67734778) | |
| 587-787, gnl|loxAfr1|scaffold_47740 (4205-4002) | |
| 587-787, gnl|mm7|chr8 (105504349-105504553) | |
| 587-787, gnl|Mm7|chr8 (105504367-105504566) | |
| 587-787, gnl|monDom2|scaffold_23 (5110435-5110235) | |
| 587-787, gnl|oryCun1|scaffold_163735 (5827-5623) | |
| 587-787, gnl|panTro1|chr18 (62064051-62064255) | |
| 587-787, gnl|rheMac2|chr20 (67519914-67520118) | |
| 587-787, gnl|rn3|chr19 (36757803-36758007) | |
| 587-787, gnl|tetNig1|chrUn_random (74390277-74390467) | |
| 587-787, gnl|xenTro1|scaffold_132 (1480288-1480083) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |