Ss1.1-Utr1-UTR010059H02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTGTCTGGGTCGGGCGTCGGCGGGCGATGGGGCTGCCGGCGCTGCTGCTGCTTGCGCTT TGCGCGGCGGGCGCTCGGGGGCTCTACTTCCACATCGGCGAGACCGAAAAGCGTTGCTTC ATCGAGGAAATCCCCGACGAGACCATGGTCATCGGTCAGGCGGGGCGAGGGTGGACTGGG CCCTGTTTGTCCCCACACCGGTTGGGCTCCCCACTCTAGCACTGCCCCGAAGGCGCCAGG CCTTGCCTGGCGAGTAGTGCCCCAGCGGAGTGTGGGGTGTGGGAACCCGGCGGACTAGGC GGGTTGTGACAGACTGCTTAGCGGGCGCGCGTTGGCAGGTGTCTGGGTCGGGCGTCGGCG GGCGATGGGGCTGCCGGCGCTGCTGCTGCTTGCGCTTTGCGCGGCGGGCGCTCGGGGGCT CTACTTCCACATCGGCGAGACCGAAAAGCGTTGCTTCATCGAGGAAATCCCCGACGAGAC CATGGTCATCGGGAACTACCGCACACAGATGTGGGATAAGCAGAAGGAGGTCTTCTTGCC CTCGACCCCCGGCCTGGGCATGCACGTGGAGGTGAAGGACCCCGAAGGCAAGGTGGTGCT GTCCCGGCAGTATGGCTCAGAGGGCCGCTTCACCTTCACTTCCCACACTCCGGGTGACCA TCAGATCTGCCTGCACTCCAACTCTACCAGGATGACACTCTTTGCTGGTGGCAGACTGCG TGTGCACCTAGACATCCAGGTTGGAGAACATGCCAACAACTACCCTGAGATTGCTGCCAA GGATAAACTGACCGAGTTGCAGCTCCGAGCCCGCCAGTTGCTTGATCAGGTGGAACAGAT CCAGAAGGAGCAGGATTACCAAAGGTATCGTGAAGAGCGCTTCCGTCTGACCAGCGAGAG CACCAACCAGAGAGTCCTGTGGTGGTCCATCGCGCAGACCGTCATCCTCATCCTCACGGG CATCTGGCAGATGCGTCACCTCAAGAGCTTCTTCGAGGCCAAGAAGCTGGTGTAGTGTCC TCTCCATACGGCCCTCTCCGCTCACCTCAGTTATTTGGTACTTTCCCCACCCACTACCTT CTCCACCTGAATTTCGAGGGAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTGTCTGGGTCGGGCGTCGGCGGGCGATGGGGCTGCCGGCGCTGCTGCTGCTTGCGCTT TGCGCGGCGGGCGCTCGGGGGCTCTACTTCCACATCGGCGAGACCGAAAAGCGTTGCTTC ATCGAGGAAATCCCCGACGAGACCATGGTCATCGGTCAGGCGGGGCGAGGGTGGACTGGG CCCTGTTTGTCCCCACACCGGTTGGGCTCCCCACTCTAGCACTGCCCCGAAGGCGCCAGG CCTTGCCTGGCGAGTAGTGCCCCAGCGGAGTGTGGGGTGTGGGAACCCGGCGGACTAGGC GGGTTGTGACAGACTGCTTAGCGGGCGCGCGTTGGCAGGTGTCTGGGTCGGGCGTCGGCG GGCGATGGGGCTGCCGGCGCTGCTGCTGCTTGCGCTTTGCGCGGCGGGCGCTCGGGGGCT CTACTTCCACATCGGCGAGACCGAAAAGCGTTGCTTCATCGAGGAAATCCCCGACGAGAC CATGGTCATCGGGAACTACCGCACACAGATGTGGGATAAGCAGAAGGAGGTCTTCTTGCC CTCGACCCCCGGCCTGGGCATGCACGTGGAGGTGAAGGACCCCGAAGGCAAGGTGGTGCT GTCCCGGCAGTATGGCTCAGAGGGCCGCTTCACCTTCACTTCCCACACTCCGGGTGACCA TCAGATCTGCCTGCACTCCAACTCTACCAGGATGACACTCTTTGCTGGTGGCAGACTGCG TGTGCACCTAGACATCCAGGTTGGAGAACATGCCAACAACTACCCTGAGATTGCTGCCAA GGATAAACTGACCGAGTTGCAGCTCCGAGCCCGCCAGTTGCTTGATCAGGTGGAACAGAT CCAGAAGGAGCAGGATTACCAAAGGTATCGTGAAGAGCGCTTCCGTCTGACCAGCGAGAG CACCAACCAGAGAGTCCTGTGGTGGTCCATCGCGCAGACCGTCATCCTCATCCTCACGGG CATCTGGCAGATGCGTCACCTCAAGAGCTTCTTCGAGGCCAAGAAGCTGGTGTAGTGTCC TCTCCATACGGCCCTCTCCGCTCACCTCAGTTATTTGGTACTTTCCCCACCCACTACCTT CTCCACCTGAATTTCGAGGGAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 1-310, gnl|bosTau2|chr4 (42949855-42949529) | |
| 1-310, gnl|Hg17|chr7 (44395039-44394681) | |
| 1-310, gnl|Mm7|chr11 (6226830-6226520) | |
| 323-492, gnl|bosTau2|chr4 (42949870-42949701) | |
| 323-492, gnl|Hg17|chr7 (44395053-44394885) | |
| 323-492, gnl|Mm7|chr11 (6226842-6226676) | |
| 591-718, gnl|bosTau2|chr4 (42949298-42949171) | |
| 591-718, gnl|canFam2|chrUn (26141675-26141579) | |
| 591-718, gnl|danRer3|chr23 (51058752-51058848) | |
| 591-718, gnl|dasNov1|scaffold_79038 (7442-7538) | |
| 591-718, gnl|echTel1|scaffold_200433 (666-570) | |
| 591-718, gnl|fr1|chrUn (293079959-293080052) | |
| 591-718, gnl|hg17|chr7 (44394283-44394379) | |
| 591-718, gnl|Hg17|chr7 (44394415-44394288) | |
| 591-718, gnl|loxAfr1|scaffold_47395 (251-155) | |
| 591-718, gnl|mm7|chr11 (6226106-6226202) | |
| 591-718, gnl|Mm7|chr11 (6226238-6226111) | |
| 591-718, gnl|monDom2|scaffold_1 (155166384-155166288) | |
| 591-718, gnl|panTro1|chr6 (45910606-45910702) | |
| 591-718, gnl|rheMac2|chr3 (81763142-81763046) | |
| 591-718, gnl|rn3|chr14 (87020249-87020345) | |
| 591-718, gnl|tetNig1|chrUn_random (90846288-90846196) | |
| 591-718, gnl|xenTro1|scaffold_217 (1275988-1275892) | |
| 722-861, gnl|bosTau2|chr7 (21898785-21898924) | |
| 722-861, gnl|canFam2|chr11 (6514363-6514225) | |
| 722-861, gnl|danRer3|chr14 (26009881-26009743) | |
| 722-861, gnl|dasNov1|scaffold_247499 (878-1016) | |
| 722-861, gnl|echTel1|scaffold_157579 (1843-1981) | |
| 722-861, gnl|fr1|chrUn (291097297-291097435) | |
| 722-861, gnl|hg17|chr5 (176953750-176953888) | |
| 722-861, gnl|Hg17|chr5 (176953749-176953888) | |
| 722-861, gnl|loxAfr1|scaffold_16979 (11132-10994) | |
| 722-861, gnl|mm7|chr13 (54683383-54683521) | |
| 722-861, gnl|Mm7|chr13 (54683382-54683521) | |
| 722-861, gnl|monDom2|scaffold_6 (17017492-17017354) | |
| 722-861, gnl|oryCun1|scaffold_81417 (4566-4705) | |
| 722-861, gnl|panTro1|chr4 (184433647-184433785) | |
| 722-861, gnl|rheMac2|chr6 (174124401-174124539) | |
| 722-861, gnl|rn3|chr17 (15072638-15072500) | |
| 722-861, gnl|tetNig1|chr1_random (4466064-4465926) | |
| 722-861, gnl|xenTro1|scaffold_230 (1607012-1606874) | |
| 865-1104, gnl|bosTau2|chr4 (42948166-42947927) | |
| 865-1104, gnl|Hg17|chr7 (44392468-44392229) | |
| 865-1104, gnl|Mm7|chr11 (6223804-6223565) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-310, gnl|bosTau2|chr4 (42949855-42949529) | |
| 1-310, gnl|Hg17|chr7 (44395039-44394681) | |
| 1-310, gnl|Mm7|chr11 (6226830-6226520) | |
| 323-492, gnl|bosTau2|chr4 (42949870-42949701) | |
| 323-492, gnl|Hg17|chr7 (44395053-44394885) | |
| 323-492, gnl|Mm7|chr11 (6226842-6226676) | |
| 591-718, gnl|bosTau2|chr4 (42949298-42949171) | |
| 591-718, gnl|canFam2|chrUn (26141675-26141579) | |
| 591-718, gnl|danRer3|chr23 (51058752-51058848) | |
| 591-718, gnl|dasNov1|scaffold_79038 (7442-7538) | |
| 591-718, gnl|echTel1|scaffold_200433 (666-570) | |
| 591-718, gnl|fr1|chrUn (293079959-293080052) | |
| 591-718, gnl|hg17|chr7 (44394283-44394379) | |
| 591-718, gnl|Hg17|chr7 (44394415-44394288) | |
| 591-718, gnl|loxAfr1|scaffold_47395 (251-155) | |
| 591-718, gnl|mm7|chr11 (6226106-6226202) | |
| 591-718, gnl|Mm7|chr11 (6226238-6226111) | |
| 591-718, gnl|monDom2|scaffold_1 (155166384-155166288) | |
| 591-718, gnl|panTro1|chr6 (45910606-45910702) | |
| 591-718, gnl|rheMac2|chr3 (81763142-81763046) | |
| 591-718, gnl|rn3|chr14 (87020249-87020345) | |
| 591-718, gnl|tetNig1|chrUn_random (90846288-90846196) | |
| 591-718, gnl|xenTro1|scaffold_217 (1275988-1275892) | |
| 722-861, gnl|bosTau2|chr7 (21898785-21898924) | |
| 722-861, gnl|canFam2|chr11 (6514363-6514225) | |
| 722-861, gnl|danRer3|chr14 (26009881-26009743) | |
| 722-861, gnl|dasNov1|scaffold_247499 (878-1016) | |
| 722-861, gnl|echTel1|scaffold_157579 (1843-1981) | |
| 722-861, gnl|fr1|chrUn (291097297-291097435) | |
| 722-861, gnl|hg17|chr5 (176953750-176953888) | |
| 722-861, gnl|Hg17|chr5 (176953749-176953888) | |
| 722-861, gnl|loxAfr1|scaffold_16979 (11132-10994) | |
| 722-861, gnl|mm7|chr13 (54683383-54683521) | |
| 722-861, gnl|Mm7|chr13 (54683382-54683521) | |
| 722-861, gnl|monDom2|scaffold_6 (17017492-17017354) | |
| 722-861, gnl|oryCun1|scaffold_81417 (4566-4705) | |
| 722-861, gnl|panTro1|chr4 (184433647-184433785) | |
| 722-861, gnl|rheMac2|chr6 (174124401-174124539) | |
| 722-861, gnl|rn3|chr17 (15072638-15072500) | |
| 722-861, gnl|tetNig1|chr1_random (4466064-4465926) | |
| 722-861, gnl|xenTro1|scaffold_230 (1607012-1606874) | |
| 865-1104, gnl|bosTau2|chr4 (42948166-42947927) | |
| 865-1104, gnl|Hg17|chr7 (44392468-44392229) | |
| 865-1104, gnl|Mm7|chr11 (6223804-6223565) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| cov (0.396458) | |
| nco (0.323468) | |
| eep (0.245128) | |
| cly (0.241284) | |
| pgl (0.236967) | |
| med (0.232504) | |
| jej (0.197844) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| cje (0.165235) | |
| csp (0.161186) | |
| hlv (0.139256) | |
| pla (0.133672) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.396458) | |
| nco (0.323468) | |
| eep (0.245128) | |
| cly (0.241284) | |
| pgl (0.236967) | |
| med (0.232504) | |
| jej (0.197844) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| cje (0.165235) | |
| csp (0.161186) | |
| hlv (0.139256) | |
| pla (0.133672) |