Non-Coding RNA Search

Ss1.1-Utr1-UTR010059H03.5

Sequence:


               
               CTTTGCGGCAAGCTCCGGCCGGGCTTGCTTGACGGCGGTGTGGCGGAGGCCCCGCCCTAG
GCGGCAGGAACCTGGAGGGAGGCGGAGGAATATGTCCGAGAGGGAAGTGTCGACAGCGCC
GGCGGGAACAGACATGCCTGCGGCCAAGAAGCAGAAGCTGAGCAGCGACGAGAACAGCAA
CCCGGACCTCTCTGGAGACGAGAATGATGATGCTGTCAGTATAGAAAGTGGTACAAACAC
TGAACGCCCTGATACACCTACAAATACGCCAAACGCGCCTGGAAGGAAAAGTTGGGGAAA
GGGAAAATGGAAGTCAAAGAAATGCAAATATTCTTTCAAATGTGTAAATAGTCTCAAGGA
AGATCATAATCAACCATTGTTCGGAGTTCAATTTAACTGGCACAGTAAAGAAGGAGATCC
ATTAGTGTTTGCAACTGTAGGAAGCAACAGAGTTACCTTATATGAATGTCACTCACAAGG
AGAAATCCGGTTGTTGCAATCTTACGTGGATGCTGATGCTGATGAAAACTTTTATACTTG
TGCATGGACATATGATAGCAATACAAGCCATCCTCTGCTGGCTGTAGCTGGATCCAGAGG
CATAATTAGAATAATTAATCCCATAACAATGCAATGCATAAAGCACTATGTTGGCCATGG
AAATGCTATCAATGAGCTGAAATTCCATCCAAGAGATCCAAATCTTCTTCTGTCAGTAAG
TAAAGATCATGCTTTACGCTTATGGAATATCCAAACGGACACTCTGGTGGCAATATTTGG
AGGTGTAGAAGGGCACAGAGATGAAGTTCTAAGTGCTGATTATGATCTTTTGGGTGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGCGGCAAGCTCCGGCCGGGCTTGCTTGACGGCGGTGTGGCGGAGGCCCCGCCCTAG
GCGGCAGGAACCTGGAGGGAGGCGGAGGAATATGTCCGAGAGGGAAGTGTCGACAGCGCC
GGCGGGAACAGACATGCCTGCGGCCAAGAAGCAGAAGCTGAGCAGCGACGAGAACAGCAA
CCCGGACCTCTCTGGAGACGAGAATGATGATGCTGTCAGTATAGAAAGTGGTACAAACAC
TGAACGCCCTGATACACCTACAAATACGCCAAACGCGCCTGGAAGGAAAAGTTGGGGAAA
GGGAAAATGGAAGTCAAAGAAATGCAAATATTCTTTCAAATGTGTAAATAGTCTCAAGGA
AGATCATAATCAACCATTGTTCGGAGTTCAATTTAACTGGCACAGTAAAGAAGGAGATCC
ATTAGTGTTTGCAACTGTAGGAAGCAACAGAGTTACCTTATATGAATGTCACTCACAAGG
AGAAATCCGGTTGTTGCAATCTTACGTGGATGCTGATGCTGATGAAAACTTTTATACTTG
TGCATGGACATATGATAGCAATACAAGCCATCCTCTGCTGGCTGTAGCTGGATCCAGAGG
CATAATTAGAATAATTAATCCCATAACAATGCAATGCATAAAGCACTATGTTGGCCATGG
AAATGCTATCAATGAGCTGAAATTCCATCCAAGAGATCCAAATCTTCTTCTGTCAGTAAG
TAAAGATCATGCTTTACGCTTATGGAATATCCAAACGGACACTCTGGTGGCAATATTTGG
AGGTGTAGAAGGGCACAGAGATGAAGTTCTAAGTGCTGATTATGATCTTTTGGGTGAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50770280|ref|XP_423107.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50770280|ref|XP_423107.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               526-643, - strand, RNAz p=0.596321

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               526-643, - strand, RNAz p=0.596321

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-206, gnl|bosTau2|chr29 (5290683-5290888)
               

               
               1-206, gnl|Hg17|chr11 (85633829-85634034)
               

               
               1-206, gnl|Mm7|chr7 (85929051-85928846)
               


               
               500-643, gnl|bosTau2|chr29 (5302546-5302691)
               

               
               500-643, gnl|canFam2|chr21 (16276251-16276129)
               

               
               500-643, gnl|danRer3|chrNA (62974646-62974756)
               

               
               500-643, gnl|dasNov1|scaffold_20258 (3875-3997)
               

               
               500-643, gnl|echTel1|scaffold_250390 (1223-1101)
               

               
               500-643, gnl|galGal2|chrUn (146985223-146985290)
               

               
               500-643, gnl|Hg17|chr11 (85645055-85645202)
               

               
               500-643, gnl|hg17|chrX (139205162-139205250)
               

               
               500-643, gnl|loxAfr1|scaffold_10495 (5574-5696)
               

               
               500-643, gnl|mm7|chr7 (85918859-85918744)
               

               
               500-643, gnl|Mm7|chr7 (85918888-85918741)
               

               
               500-643, gnl|oryCun1|scaffold_186379 (770-648)
               

               
               500-643, gnl|panTro1|chr9 (87292068-87292187)
               

               
               500-643, gnl|rheMac2|chrX (138669479-138669568)
               

               
               500-643, gnl|rn3|chr1 (146658455-146658340)
               

               
               500-643, gnl|xenTro1|scaffold_195 (1502325-1502211)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-206, gnl|bosTau2|chr29 (5290683-5290888)
               

               
               1-206, gnl|Hg17|chr11 (85633829-85634034)
               

               
               1-206, gnl|Mm7|chr7 (85929051-85928846)
               


               
               500-643, gnl|bosTau2|chr29 (5302546-5302691)
               

               
               500-643, gnl|canFam2|chr21 (16276251-16276129)
               

               
               500-643, gnl|danRer3|chrNA (62974646-62974756)
               

               
               500-643, gnl|dasNov1|scaffold_20258 (3875-3997)
               

               
               500-643, gnl|echTel1|scaffold_250390 (1223-1101)
               

               
               500-643, gnl|galGal2|chrUn (146985223-146985290)
               

               
               500-643, gnl|Hg17|chr11 (85645055-85645202)
               

               
               500-643, gnl|hg17|chrX (139205162-139205250)
               

               
               500-643, gnl|loxAfr1|scaffold_10495 (5574-5696)
               

               
               500-643, gnl|mm7|chr7 (85918859-85918744)
               

               
               500-643, gnl|Mm7|chr7 (85918888-85918741)
               

               
               500-643, gnl|oryCun1|scaffold_186379 (770-648)
               

               
               500-643, gnl|panTro1|chr9 (87292068-87292187)
               

               
               500-643, gnl|rheMac2|chrX (138669479-138669568)
               

               
               500-643, gnl|rn3|chr1 (146658455-146658340)
               

               
               500-643, gnl|xenTro1|scaffold_195 (1502325-1502211)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nep (0.183925)
               

               
               cki (0.165235)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               cki (0.165235)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	1-206, gnl\|bosTau2\|chr29 (5290683-5290888)
	1-206, gnl\|Hg17\|chr11 (85633829-85634034)
	1-206, gnl\|Mm7\|chr7 (85929051-85928846)

	500-643, gnl\|bosTau2\|chr29 (5302546-5302691)
	500-643, gnl\|canFam2\|chr21 (16276251-16276129)
	500-643, gnl\|danRer3\|chrNA (62974646-62974756)
	500-643, gnl\|dasNov1\|scaffold_20258 (3875-3997)
	500-643, gnl\|echTel1\|scaffold_250390 (1223-1101)
	500-643, gnl\|galGal2\|chrUn (146985223-146985290)
	500-643, gnl\|Hg17\|chr11 (85645055-85645202)
	500-643, gnl\|hg17\|chrX (139205162-139205250)
	500-643, gnl\|loxAfr1\|scaffold_10495 (5574-5696)
	500-643, gnl\|mm7\|chr7 (85918859-85918744)
	500-643, gnl\|Mm7\|chr7 (85918888-85918741)
	500-643, gnl\|oryCun1\|scaffold_186379 (770-648)
	500-643, gnl\|panTro1\|chr9 (87292068-87292187)
	500-643, gnl\|rheMac2\|chrX (138669479-138669568)
	500-643, gnl\|rn3\|chr1 (146658455-146658340)
	500-643, gnl\|xenTro1\|scaffold_195 (1502325-1502211)