Non-Coding RNA Search

Ss1.1-Utr1-UTR010059H09.5

Sequence:


               
               GGAGGTGGCGGCGGCGGTAACTAGGCGGGTGGTGCCGCACGAGAGCACAAGCCGCTGCCA
TGCCGCTGGAGCTGGAGCTGTGTCCCGGACGCTGGGTGGGCGGGCAGCACCCATGCTTCA
TCATTGCGGAGATAGGCCAGAACCACCAGGGCGACCTGGATGTGGCCAAGCGCATGATCC
GTATGGCCAAGGAGTGTGGGGCTGATTGCGCCAAGTTCCAGAAGAGTGAGCTGGAGTATA
AGTTTAATCGGAAAGCCTTGGAGAGGCCGTACACTTCAAAGCACTCCTGGGGGAAGACCT
ACGGGGAGCACAAACGCCACCTGGAATTCAGCCACGCCCAGTACAGGGAGCTGCAGAAAT
TCGCTGAGGAGGTTGGCATCTTCTTCACTGCCTCTGGCATGGATGAGATGGCAGTTGAGT
TTCTGCATGAACTGAATGTTCCATTTTTCAAAGTTGGATCTGGGGACACTAATAATTTCC
CTTATCTGGAAAAGACAGCCAAAAAAGGCCGCCCAATGGTCATCTCCAGTGGGATGCAGT
CAATGGACACCATGAAGCAAGTCTATCAGATTGTGAAGCCCCTCAACCCCAACTTCTGCT
TCCTCCAGTGCACCAGCGCGTACCCACTCCAACCTGAGGACGTCAACCTGCGTGTCATCT
CGGAATATCAGAAGCTCTTTCCTGACATTCCCATAGGGTATTCTGGGCATGAAACAGGCA
TAGCAATATCTGTGGCTGCCGTGGCTCTGGGAGCCAAGGTCTTGGAGCGTCACATAACTT
TGGACAAGACTTGGAAGGGGAGTGACCACTCGGCCTCGCTGGAGCCTGGAGAGCTGGCCG
AGCTGGTGCGGTCTGTGCGCCTCGTGGAGAAGGCCCTGGGCTCCCCAACCAAGCAGCTGC
TGCCCTGTGAGATGGCCTGCAACGAGAAGCTGGGCAAGTCTGTGGTGGCCAAAGTGAAAA
TTCCGGAAGGCACTGTTCTAACACTGGACATGCTCACTGTGAAGGTGGGTGAACCCAAAG
GCTACCCTCCTGAAGACATCTTTAGTCTGGTGGGCAAGAAGGTCCTGGTCACTATTGAAG
AAGATGATACCATCATGGAAGAATCGGTAGAAAATCATGGCAAAAAAATCAAGTCTTAAA
ATAAAATGCCATTCTCCAAATTGCCTTGCTGGTACGTTTGGGTGAGGTGGGGCGTGAGGG
GTGGTCTCCGGGGGCCTGGCTTTCATCCTTCCCCACCTAGATAGCAGACATTTTTGGGCC
AGGCCCTGGGTCAAGCCCATTGGAGGGATATAGAGAGCAAATATGGGCAGCCCCTGCCTC
AAGTGGACTGGCCTAGAACGGGTGGTGGGTTCAGAAGCATCTCATCACCCTCCAGTTGCA
GTGAGGGTACAGAGAGGGGAGCACCAGCTATGTGGGCCCTCTTTTCATAGCCTTCCCTCT
TCCTGCTTGCAAAGCCAACCGTAATGACCCAAAATCTCCCTTCCTTCCTGCTGTCCCTCC
TTATGCCCTGCCCACCCTGGGACTGAATCTAGTTAGCTGTAGAGCGATCACTTGGCATTA
GAGAAGGGGTTGGTCAGAATGTATTGCAGGCAGAGAAATGCCCAAAGCGCTCTTTAATCT
CTGAGCAAAGAGAGTTGGAAATGGCATTATTCTTTCTTTCAACAAACATGGAGGGCCTAC
TAGGACCTGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGTGGCGGCGGCGGTAACTAGGCGGGTGGTGCCGCACGAGAGCACAAGCCGCTGCCA
TGCCGCTGGAGCTGGAGCTGTGTCCCGGACGCTGGGTGGGCGGGCAGCACCCATGCTTCA
TCATTGCGGAGATAGGCCAGAACCACCAGGGCGACCTGGATGTGGCCAAGCGCATGATCC
GTATGGCCAAGGAGTGTGGGGCTGATTGCGCCAAGTTCCAGAAGAGTGAGCTGGAGTATA
AGTTTAATCGGAAAGCCTTGGAGAGGCCGTACACTTCAAAGCACTCCTGGGGGAAGACCT
ACGGGGAGCACAAACGCCACCTGGAATTCAGCCACGCCCAGTACAGGGAGCTGCAGAAAT
TCGCTGAGGAGGTTGGCATCTTCTTCACTGCCTCTGGCATGGATGAGATGGCAGTTGAGT
TTCTGCATGAACTGAATGTTCCATTTTTCAAAGTTGGATCTGGGGACACTAATAATTTCC
CTTATCTGGAAAAGACAGCCAAAAAAGGCCGCCCAATGGTCATCTCCAGTGGGATGCAGT
CAATGGACACCATGAAGCAAGTCTATCAGATTGTGAAGCCCCTCAACCCCAACTTCTGCT
TCCTCCAGTGCACCAGCGCGTACCCACTCCAACCTGAGGACGTCAACCTGCGTGTCATCT
CGGAATATCAGAAGCTCTTTCCTGACATTCCCATAGGGTATTCTGGGCATGAAACAGGCA
TAGCAATATCTGTGGCTGCCGTGGCTCTGGGAGCCAAGGTCTTGGAGCGTCACATAACTT
TGGACAAGACTTGGAAGGGGAGTGACCACTCGGCCTCGCTGGAGCCTGGAGAGCTGGCCG
AGCTGGTGCGGTCTGTGCGCCTCGTGGAGAAGGCCCTGGGCTCCCCAACCAAGCAGCTGC
TGCCCTGTGAGATGGCCTGCAACGAGAAGCTGGGCAAGTCTGTGGTGGCCAAAGTGAAAA
TTCCGGAAGGCACTGTTCTAACACTGGACATGCTCACTGTGAAGGTGGGTGAACCCAAAG
GCTACCCTCCTGAAGACATCTTTAGTCTGGTGGGCAAGAAGGTCCTGGTCACTATTGAAG
AAGATGATACCATCATGGAAGAATCGGTAGAAAATCATGGCAAAAAAATCAAGTCTTAAA
ATAAAATGCCATTCTCCAAATTGCCTTGCTGGTACGTTTGGGTGAGGTGGGGCGTGAGGG
GTGGTCTCCGGGGGCCTGGCTTTCATCCTTCCCCACCTAGATAGCAGACATTTTTGGGCC
AGGCCCTGGGTCAAGCCCATTGGAGGGATATAGAGAGCAAATATGGGCAGCCCCTGCCTC
AAGTGGACTGGCCTAGAACGGGTGGTGGGTTCAGAAGCATCTCATCACCCTCCAGTTGCA
GTGAGGGTACAGAGAGGGGAGCACCAGCTATGTGGGCCCTCTTTTCATAGCCTTCCCTCT
TCCTGCTTGCAAAGCCAACCGTAATGACCCAAAATCTCCCTTCCTTCCTGCTGTCCCTCC
TTATGCCCTGCCCACCCTGGGACTGAATCTAGTTAGCTGTAGAGCGATCACTTGGCATTA
GAGAAGGGGTTGGTCAGAATGTATTGCAGGCAGAGAAATGCCCAAAGCGCTCTTTAATCT
CTGAGCAAAGAGAGTTGGAAATGGCATTATTCTTTCTTTCAACAAACATGGAGGGCCTAC
TAGGACCTGCAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61879411|ref|XP_585670.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61879411|ref|XP_585670.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               190-410, gnl|bosTau2|chr8 (33221003-33221223)
               

               
               190-410, gnl|Hg17|chr9 (97902617-97902837)
               

               
               190-410, gnl|Mm7|chr4 (46506518-46506738)
               


               
               506-663, gnl|bosTau2|chr8 (33229617-33229774)
               

               
               506-663, gnl|Hg17|chr9 (97920028-97920185)
               

               
               506-663, gnl|Mm7|chr4 (46513878-46514035)
               


               
               928-1520, gnl|bosTau2|chr8 (33236487-33237069)
               

               
               928-1520, gnl|Hg17|chr9 (97924681-97925276)
               

               
               928-1520, gnl|Mm7|chr4 (46516247-46516750)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               190-410, gnl|bosTau2|chr8 (33221003-33221223)
               

               
               190-410, gnl|Hg17|chr9 (97902617-97902837)
               

               
               190-410, gnl|Mm7|chr4 (46506518-46506738)
               


               
               506-663, gnl|bosTau2|chr8 (33229617-33229774)
               

               
               506-663, gnl|Hg17|chr9 (97920028-97920185)
               

               
               506-663, gnl|Mm7|chr4 (46513878-46514035)
               


               
               928-1520, gnl|bosTau2|chr8 (33236487-33237069)
               

               
               928-1520, gnl|Hg17|chr9 (97924681-97925276)
               

               
               928-1520, gnl|Mm7|chr4 (46516247-46516750)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               cbr (0.895828)
               

               
               nco (0.485201)
               

               
               col (0.390016)
               

               
               nlu (0.383362)
               

               
               ton (0.351)
               

               
               nmm (0.265604)
               

               
               eru (0.240096)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.895828)
               

               
               nco (0.485201)
               

               
               col (0.390016)
               

               
               nlu (0.383362)
               

               
               ton (0.351)
               

               
               nmm (0.265604)
               

               
               eru (0.240096)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

	190-410, gnl\|bosTau2\|chr8 (33221003-33221223)
	190-410, gnl\|Hg17\|chr9 (97902617-97902837)
	190-410, gnl\|Mm7\|chr4 (46506518-46506738)

	506-663, gnl\|bosTau2\|chr8 (33229617-33229774)
	506-663, gnl\|Hg17\|chr9 (97920028-97920185)
	506-663, gnl\|Mm7\|chr4 (46513878-46514035)

	928-1520, gnl\|bosTau2\|chr8 (33236487-33237069)
	928-1520, gnl\|Hg17\|chr9 (97924681-97925276)
	928-1520, gnl\|Mm7\|chr4 (46516247-46516750)

	cbr (0.895828)
	nco (0.485201)
	col (0.390016)
	nlu (0.383362)
	ton (0.351)
	nmm (0.265604)
	eru (0.240096)
	mas (0.210305)
	hea (0.204499)
	fcc (0.197785)
	sin (0.174948)
	cje (0.165235)
	lyg (0.133103)
	bla (0.124347)
	pgl (0.118483)
	eje (0.0988338)