Ss1.1-Utr1-UTR010060C12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATATTGCCCGCAGAAGCTGCGGCGGCGAAGCAGAAAACGCCGGGGGGAGGAGATGGGAGG ACGAAGAGGTCCCAACAGGACATCCTACTGTCGAAATCCACTCTGTGAGCCAGGATCTTC TGGGGGCTCTGGTGGGGGCCACACTTCCAGCGCATCTGTCACCAGTGTCCGTTCCCGTAC CAGGAGCAGTTCTGGGACGGGCCTCTCCAGCCCTCCACTGGCCACTCAGACGGTTGTGCC CCTGCAGCACTGCAAGATCCCCGAGCTCCCAGTCCAGGCCAGCATTCTATTTGAATTGCA GCTTTTCTTCTGTCAGCTCATAGCCCTCTTCGTCCACTACATCAATATCTACAAGACAGT GTGGTGGTATCCACCCTCCCACCCACCCTCTCACACCTCCCTGAACTTCCACCTGATCGA CTTCAACTTGCTAATGGTGACCACCATCGTTCTGGGCCGCCGCTTCATTGGGTCCATCGT GAAGGAGGCTTCTCAGAGGGGGAAGGTCTCCCTCTTTCGCTCCATCCTGCTGTTCCTCAC CCGCTTCACCGTTCTCACGGCCACAGGCTGGAGTCTGTGCCGCTCCCTCATCCACCTCTT CAGGACCTACTCCTTCTTGAACCTCCTGTTCCTCTGCTATCCGTTTGGGATGTACATTCC GTTCCTGCAGCTCAACTGTGACCTCCGCAAGACCAACCTCTTCAGCCACATGGCCTCCAT GGGTCCCCGGGAGGCAGTCAGTGGCCTGGCACGGAGCCGGGACTACCTGCTGACGCTGCG GGAGACATGGAAGCAGCACACGCGGCAGCTGTATGGCCCAGATGCCATGCCCACCCACGC CTGCTGCCTGTCGCCAAGCCTCATCCGCAGCGAGGTGGAGTTCCTCAAGATGGACTTCAA CTGGCGCATGAAGGAAGTGCTGGTCAGCTCCATGCTGAGTGCCTACTACGTGGCCTTTGT GCCCGTCTGGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATATTGCCCGCAGAAGCTGCGGCGGCGAAGCAGAAAACGCCGGGGGGAGGAGATGGGAGG ACGAAGAGGTCCCAACAGGACATCCTACTGTCGAAATCCACTCTGTGAGCCAGGATCTTC TGGGGGCTCTGGTGGGGGCCACACTTCCAGCGCATCTGTCACCAGTGTCCGTTCCCGTAC CAGGAGCAGTTCTGGGACGGGCCTCTCCAGCCCTCCACTGGCCACTCAGACGGTTGTGCC CCTGCAGCACTGCAAGATCCCCGAGCTCCCAGTCCAGGCCAGCATTCTATTTGAATTGCA GCTTTTCTTCTGTCAGCTCATAGCCCTCTTCGTCCACTACATCAATATCTACAAGACAGT GTGGTGGTATCCACCCTCCCACCCACCCTCTCACACCTCCCTGAACTTCCACCTGATCGA CTTCAACTTGCTAATGGTGACCACCATCGTTCTGGGCCGCCGCTTCATTGGGTCCATCGT GAAGGAGGCTTCTCAGAGGGGGAAGGTCTCCCTCTTTCGCTCCATCCTGCTGTTCCTCAC CCGCTTCACCGTTCTCACGGCCACAGGCTGGAGTCTGTGCCGCTCCCTCATCCACCTCTT CAGGACCTACTCCTTCTTGAACCTCCTGTTCCTCTGCTATCCGTTTGGGATGTACATTCC GTTCCTGCAGCTCAACTGTGACCTCCGCAAGACCAACCTCTTCAGCCACATGGCCTCCAT GGGTCCCCGGGAGGCAGTCAGTGGCCTGGCACGGAGCCGGGACTACCTGCTGACGCTGCG GGAGACATGGAAGCAGCACACGCGGCAGCTGTATGGCCCAGATGCCATGCCCACCCACGC CTGCTGCCTGTCGCCAAGCCTCATCCGCAGCGAGGTGGAGTTCCTCAAGATGGACTTCAA CTGGCGCATGAAGGAAGTGCTGGTCAGCTCCATGCTGAGTGCCTACTACGTGGCCTTTGT GCCCGTCTGGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 259-403, - strand, RNAz p=0.770194 | |
| 762-881, - strand, RNAz p=0.969476 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 259-403, - strand, RNAz p=0.770194 | |
| 762-881, - strand, RNAz p=0.969476 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 180-403, gnl|bosTau2|chr2 (73393659-73393882) | |
| 180-403, gnl|canFam2|chr2 (71990206-71989961) | |
| 180-403, gnl|danRer3|chr13 (34453113-34452882) | |
| 180-403, gnl|dasNov1|scaffold_3246 (120039-119795) | |
| 180-403, gnl|echTel1|scaffold_238631 (3060-3298) | |
| 180-403, gnl|fr1|chrUn (59899379-59899619) | |
| 180-403, gnl|galGal2|chr23 (4548600-4548834) | |
| 180-403, gnl|hg17|chr1 (32210291-32210535) | |
| 180-403, gnl|Hg17|chr1 (32210293-32210516) | |
| 180-403, gnl|loxAfr1|scaffold_40547 (5950-6194) | |
| 180-403, gnl|mm7|chr4 (129137940-129137696) | |
| 180-403, gnl|Mm7|chr4 (129137936-129137713) | |
| 180-403, gnl|monDom2|scaffold_43 (7710839-7710607) | |
| 180-403, gnl|panTro1|chr1 (32966727-32966971) | |
| 180-403, gnl|rheMac2|chr1 (34830411-34830655) | |
| 180-403, gnl|rn3|chr5 (148861617-148861373) | |
| 180-403, gnl|tetNig1|chr10 (3713034-3713272) | |
| 180-403, gnl|xenTro1|scaffold_523 (642848-642617) | |
| 643-972, gnl|bosTau2|chr2 (73403039-73403368) | |
| 643-972, gnl|Hg17|chr1 (32226369-32226698) | |
| 643-972, gnl|Mm7|chr4 (129131754-129131425) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 180-403, gnl|bosTau2|chr2 (73393659-73393882) | |
| 180-403, gnl|canFam2|chr2 (71990206-71989961) | |
| 180-403, gnl|danRer3|chr13 (34453113-34452882) | |
| 180-403, gnl|dasNov1|scaffold_3246 (120039-119795) | |
| 180-403, gnl|echTel1|scaffold_238631 (3060-3298) | |
| 180-403, gnl|fr1|chrUn (59899379-59899619) | |
| 180-403, gnl|galGal2|chr23 (4548600-4548834) | |
| 180-403, gnl|hg17|chr1 (32210291-32210535) | |
| 180-403, gnl|Hg17|chr1 (32210293-32210516) | |
| 180-403, gnl|loxAfr1|scaffold_40547 (5950-6194) | |
| 180-403, gnl|mm7|chr4 (129137940-129137696) | |
| 180-403, gnl|Mm7|chr4 (129137936-129137713) | |
| 180-403, gnl|monDom2|scaffold_43 (7710839-7710607) | |
| 180-403, gnl|panTro1|chr1 (32966727-32966971) | |
| 180-403, gnl|rheMac2|chr1 (34830411-34830655) | |
| 180-403, gnl|rn3|chr5 (148861617-148861373) | |
| 180-403, gnl|tetNig1|chr10 (3713034-3713272) | |
| 180-403, gnl|xenTro1|scaffold_523 (642848-642617) | |
| 643-972, gnl|bosTau2|chr2 (73403039-73403368) | |
| 643-972, gnl|Hg17|chr1 (32226369-32226698) | |
| 643-972, gnl|Mm7|chr4 (129131754-129131425) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| pgl (0.118483) |