Non-Coding RNA Search

Ss1.1-Utr1-UTR010061C03.5

Sequence:


               
               AAATGCAAAGGCAGGGGTGGGACGGTGCAGGCGCAAAGGATTAGGTTTGGCTAGACTCGA
TTTAAAGAGACAGAAGCTGTCGGAGTCCAAGAAGACGGTCCCCGCGACCCTCCCCCCAAG
TCCTTGGGACCACTTGGGTCCCCAAAGCTGGGGAGATGGTCTGCGGAGGCTTTGCCTGCT
CCAAGAATGCGCTGTGTGCGCTCAACGTGGTCTACATGCTGGTAGGCTTGTTGCTCATTG
GAGTGGCTGCTTGGGCTAAAGGCCTGGGTCTGGTGTCCAGCATCCACATCATCGGAGGAG
TCATAGCCGTGGGAGTCTTCCTTCTTCTCATTGCGGTGGCTGGACTGGTGGGTGCTGTCA
ACCACCATCAAGTACTGCTATTCTTTTACATGATCATCCTTGGCTTGGTCTTCATCTTCC
AGTTTGGAATCTCTTGCTCATGTCTGGCTATTAACCTAAGCAAACAGACAGATATCATCA
ATGCTTCTTGGCGGGTCATGAGCAACAAGACTCGGAATGAACTGGAAAGAAGTTTTGATT
GCTGTGGCTTGTTCAACCTCACAACCCTGGATCAACAAGATTATGCTTTCTGCACTGCAA
TCTGCAAGAGCCGGAGCCCCTCATGTCAGATGTGTGGAGAGAAGTTTCTTAGGCATTCAG
ATGAAGCCCTGAAAATCCTGGGAGGTGTTGGACTCTTCTTTAGCTTTACAGAGATCCTTG
GTGTTTGGCTAGCAATGAGATTTCGGAATCAGAAGGACCCTCGAGCCAACCCTAGTGCCT
TTCTATGAGATGCTGAATCCTTCTGACTTTTCTCCCGCTGTTTGCTCTCCCTAAGCCTTT
TTTTTCCCCCTCCCTTAGGGAAAACCTGGGGTTTACAGCCCTTTTTGTTTGAGGAAAAAG
GAAAGGTCTTTTGCCATGTTCCCTAGATGACTGAATAGCTAGGCTTTATGCCTTGACATG
TTTTGTTGGGAACAAGATTATAAAGAATAAAAAAACCTTCCTTCCTCTCTCCCTAAGTGG
ATATGGAAAGCTCCTGAAAGTGCATGAGATGGGATAGAGGTCGGAGGAACTCCTGGCTCT
GTTTCCCCTCTTCTCCCTTCCATGTGCTGGACTGCCTCAACACATCCTGGCTCCAAGGGT
AAATCAGGGACAAAGCCAGGGAGAAAACCACCAAGAACTCTTGTAATAAGCTGGACCCAG
TTTGAAGAAGTTCAGTAAATATAAAAATAAAAGCCATTTAAACTCTATATTCAAAAAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATGCAAAGGCAGGGGTGGGACGGTGCAGGCGCAAAGGATTAGGTTTGGCTAGACTCGA
TTTAAAGAGACAGAAGCTGTCGGAGTCCAAGAAGACGGTCCCCGCGACCCTCCCCCCAAG
TCCTTGGGACCACTTGGGTCCCCAAAGCTGGGGAGATGGTCTGCGGAGGCTTTGCCTGCT
CCAAGAATGCGCTGTGTGCGCTCAACGTGGTCTACATGCTGGTAGGCTTGTTGCTCATTG
GAGTGGCTGCTTGGGCTAAAGGCCTGGGTCTGGTGTCCAGCATCCACATCATCGGAGGAG
TCATAGCCGTGGGAGTCTTCCTTCTTCTCATTGCGGTGGCTGGACTGGTGGGTGCTGTCA
ACCACCATCAAGTACTGCTATTCTTTTACATGATCATCCTTGGCTTGGTCTTCATCTTCC
AGTTTGGAATCTCTTGCTCATGTCTGGCTATTAACCTAAGCAAACAGACAGATATCATCA
ATGCTTCTTGGCGGGTCATGAGCAACAAGACTCGGAATGAACTGGAAAGAAGTTTTGATT
GCTGTGGCTTGTTCAACCTCACAACCCTGGATCAACAAGATTATGCTTTCTGCACTGCAA
TCTGCAAGAGCCGGAGCCCCTCATGTCAGATGTGTGGAGAGAAGTTTCTTAGGCATTCAG
ATGAAGCCCTGAAAATCCTGGGAGGTGTTGGACTCTTCTTTAGCTTTACAGAGATCCTTG
GTGTTTGGCTAGCAATGAGATTTCGGAATCAGAAGGACCCTCGAGCCAACCCTAGTGCCT
TTCTATGAGATGCTGAATCCTTCTGACTTTTCTCCCGCTGTTTGCTCTCCCTAAGCCTTT
TTTTTCCCCCTCCCTTAGGGAAAACCTGGGGTTTACAGCCCTTTTTGTTTGAGGAAAAAG
GAAAGGTCTTTTGCCATGTTCCCTAGATGACTGAATAGCTAGGCTTTATGCCTTGACATG
TTTTGTTGGGAACAAGATTATAAAGAATAAAAAAACCTTCCTTCCTCTCTCCCTAAGTGG
ATATGGAAAGCTCCTGAAAGTGCATGAGATGGGATAGAGGTCGGAGGAACTCCTGGCTCT
GTTTCCCCTCTTCTCCCTTCCATGTGCTGGACTGCCTCAACACATCCTGGCTCCAAGGGT
AAATCAGGGACAAAGCCAGGGAGAAAACCACCAAGAACTCTTGTAATAAGCTGGACCCAG
TTTGAAGAAGTTCAGTAAATATAAAAATAAAAGCCATTTAAACTCTATATTCAAAAAAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               SAS_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               SAS_PIG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               41-221, + strand, RNAz p=0.96963
               

               
               744-1130, - strand, RNAz p=0.993551

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-221, + strand, RNAz p=0.96963
               

               
               744-1130, - strand, RNAz p=0.993551

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005981, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005981, +

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               2-221, gnl|bosTau2|chr5 (34322091-34322307)
               

               
               2-221, gnl|Hg17|chr12 (56425051-56425270)
               

               
               2-221, gnl|Mm7|chr10 (126567808-126567590)
               


               
               465-599, gnl|bosTau2|chr5 (34323668-34323802)
               

               
               465-599, gnl|canFam2|chr10 (4794512-4794610)
               

               
               465-599, gnl|dasNov1|scaffold_913 (171686-171588)
               

               
               465-599, gnl|echTel1|scaffold_319337 (67297-67395)
               

               
               465-599, gnl|hg17|chr12 (56426637-56426735)
               

               
               465-599, gnl|Hg17|chr12 (56426636-56426770)
               

               
               465-599, gnl|mm7|chr10 (126566093-126565995)
               

               
               465-599, gnl|Mm7|chr10 (126566092-126565958)
               

               
               465-599, gnl|monDom2|scaffold_49 (7372889-7372806)
               

               
               465-599, gnl|oryCun1|scaffold_98505 (4648-4729)
               

               
               465-599, gnl|panTro1|chr10 (57671163-57671261)
               

               
               465-599, gnl|rheMac2|chr11 (54835463-54835561)
               

               
               465-599, gnl|rn3|chr7 (67041125-67041027)
               

               
               465-599, gnl|xenTro1|scaffold_34 (2266044-2265946)
               


               
               667-1260, gnl|bosTau2|chr5 (34324287-34324875)
               

               
               667-1260, gnl|Hg17|chr12 (56427222-56427842)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-221, gnl|bosTau2|chr5 (34322091-34322307)
               

               
               2-221, gnl|Hg17|chr12 (56425051-56425270)
               

               
               2-221, gnl|Mm7|chr10 (126567808-126567590)
               


               
               465-599, gnl|bosTau2|chr5 (34323668-34323802)
               

               
               465-599, gnl|canFam2|chr10 (4794512-4794610)
               

               
               465-599, gnl|dasNov1|scaffold_913 (171686-171588)
               

               
               465-599, gnl|echTel1|scaffold_319337 (67297-67395)
               

               
               465-599, gnl|hg17|chr12 (56426637-56426735)
               

               
               465-599, gnl|Hg17|chr12 (56426636-56426770)
               

               
               465-599, gnl|mm7|chr10 (126566093-126565995)
               

               
               465-599, gnl|Mm7|chr10 (126566092-126565958)
               

               
               465-599, gnl|monDom2|scaffold_49 (7372889-7372806)
               

               
               465-599, gnl|oryCun1|scaffold_98505 (4648-4729)
               

               
               465-599, gnl|panTro1|chr10 (57671163-57671261)
               

               
               465-599, gnl|rheMac2|chr11 (54835463-54835561)
               

               
               465-599, gnl|rn3|chr7 (67041125-67041027)
               

               
               465-599, gnl|xenTro1|scaffold_34 (2266044-2265946)
               


               
               667-1260, gnl|bosTau2|chr5 (34324287-34324875)
               

               
               667-1260, gnl|Hg17|chr12 (56427222-56427842)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

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               elu (0.385356)
               

               
               mcp (0.341297)
               

               
               lnt (0.284616)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               mcp (0.341297)
               

               
               lnt (0.284616)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

	41-221, + strand, RNAz p=0.96963
	744-1130, - strand, RNAz p=0.993551

	2-221, gnl\|bosTau2\|chr5 (34322091-34322307)
	2-221, gnl\|Hg17\|chr12 (56425051-56425270)
	2-221, gnl\|Mm7\|chr10 (126567808-126567590)

	465-599, gnl\|bosTau2\|chr5 (34323668-34323802)
	465-599, gnl\|canFam2\|chr10 (4794512-4794610)
	465-599, gnl\|dasNov1\|scaffold_913 (171686-171588)
	465-599, gnl\|echTel1\|scaffold_319337 (67297-67395)
	465-599, gnl\|hg17\|chr12 (56426637-56426735)
	465-599, gnl\|Hg17\|chr12 (56426636-56426770)
	465-599, gnl\|mm7\|chr10 (126566093-126565995)
	465-599, gnl\|Mm7\|chr10 (126566092-126565958)
	465-599, gnl\|monDom2\|scaffold_49 (7372889-7372806)
	465-599, gnl\|oryCun1\|scaffold_98505 (4648-4729)
	465-599, gnl\|panTro1\|chr10 (57671163-57671261)
	465-599, gnl\|rheMac2\|chr11 (54835463-54835561)
	465-599, gnl\|rn3\|chr7 (67041125-67041027)
	465-599, gnl\|xenTro1\|scaffold_34 (2266044-2265946)

	667-1260, gnl\|bosTau2\|chr5 (34324287-34324875)
	667-1260, gnl\|Hg17\|chr12 (56427222-56427842)

	elu (0.385356)
	mcp (0.341297)
	lnt (0.284616)
	fli (0.202881)
	fcc (0.197785)
	nlu (0.191681)
	fbs (0.175346)
	fhi (0.169578)
	hyp (0.142837)
	ute (0.132784)
	ese (0.126502)
	eep (0.122564)
	eru (0.120048)
	cbl (0.114797)
	eje (0.0988338)