Non-Coding RNA Search

Ss1.1-Utr1-UTR010061D04.5

Sequence:


               
               ATCTCAGGAGTCCAGTGGAGAAAGTGCTGTCTGTCGCATTGGTGGCGGCGAGAGCGGGCG
GTGGGTCGGGGAATTGGCCGTTTCTCTCGCTACAGCTACAGGCCTGTTTCCATCGCAGCA
CCACGGCCCCCTCCTCCAGTCTCGACCCCGGCCCGGCTGCCGGGGGCGCTTCTTCAGGCT
CCTTGACGCCGCTCCAAGGAGAAAATACCTGGGCATCGCCTGGGCTTCCAGCCAGGGGAC
TGGCTCCGGGGTTCAGCACTCCGGACGGCAGTAAGGAGTGCCCTTATCAACCCGCGCCCT
GTCCCCCTCCCTGAGCCATTGACACCCTGGTCCAGAGCGACAGCCTTGGACCTGGGACTA
GACGGATCCAAGACGCTCAGCCCCGGCCTCCCACAAACGGGGTTCTGCATCGTCTCTGAT
ATGTCTCCCACCATCTCCCACAAGGACAATAGTCGGCAACGACGGCCAGGGACTTTCAAC
CACTCTCTGGATATGAAGAGCGGTCCTCTACCGCCGGGCTCCTGGGATGATGATCATCCG
GAGTTGGTGGGCGGGGAAGGGGACAAAGAAGCTCTTCTGGGGGATATCGGCGCTAGTGAC
CTCTCAAAACCCCCAAGGAGCTGCCGGGCCGAATTAAGCAGCATTTTGCTTTTGCTCTTT
CTTTACGTGCTTCAGGGCATTCCACTGGGCCTGGCAGGAAGCATCCCACTTATTTTGCAG
AGCAAAAATGTTAGCTATACAGATCAGGCTTTCTTCAGTTTTGTCTTTTGGCCCTTCAGT
CTCAAATTACTCTGGGCCCCGTTAGTTGATGCGGTTTACTTTAGGAACTTCGGCCGTCGC
AAATCTTGGCTTGTCCCTACACAGTACATATTGGGATTCTTCATGATATATCTATCCACT
CAAGTGGACCACTTGCTCGGGAGTACAGATGGCAGAAGCCCCGATGTTGTTGCTCTCACT
GTGACTTTCTTTTTGTTTGAATTCCTGGCAGCCACTCAGGACATCGCTGTGGATGGTTGG
GCGTTAACTATGTTATCCCGGGAAAATGTGGGTTATGCTTCTACTTGCAATTCAGTAGGC
CAAACAGCGGGCTATTTTTTGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTCAGGAGTCCAGTGGAGAAAGTGCTGTCTGTCGCATTGGTGGCGGCGAGAGCGGGCG
GTGGGTCGGGGAATTGGCCGTTTCTCTCGCTACAGCTACAGGCCTGTTTCCATCGCAGCA
CCACGGCCCCCTCCTCCAGTCTCGACCCCGGCCCGGCTGCCGGGGGCGCTTCTTCAGGCT
CCTTGACGCCGCTCCAAGGAGAAAATACCTGGGCATCGCCTGGGCTTCCAGCCAGGGGAC
TGGCTCCGGGGTTCAGCACTCCGGACGGCAGTAAGGAGTGCCCTTATCAACCCGCGCCCT
GTCCCCCTCCCTGAGCCATTGACACCCTGGTCCAGAGCGACAGCCTTGGACCTGGGACTA
GACGGATCCAAGACGCTCAGCCCCGGCCTCCCACAAACGGGGTTCTGCATCGTCTCTGAT
ATGTCTCCCACCATCTCCCACAAGGACAATAGTCGGCAACGACGGCCAGGGACTTTCAAC
CACTCTCTGGATATGAAGAGCGGTCCTCTACCGCCGGGCTCCTGGGATGATGATCATCCG
GAGTTGGTGGGCGGGGAAGGGGACAAAGAAGCTCTTCTGGGGGATATCGGCGCTAGTGAC
CTCTCAAAACCCCCAAGGAGCTGCCGGGCCGAATTAAGCAGCATTTTGCTTTTGCTCTTT
CTTTACGTGCTTCAGGGCATTCCACTGGGCCTGGCAGGAAGCATCCCACTTATTTTGCAG
AGCAAAAATGTTAGCTATACAGATCAGGCTTTCTTCAGTTTTGTCTTTTGGCCCTTCAGT
CTCAAATTACTCTGGGCCCCGTTAGTTGATGCGGTTTACTTTAGGAACTTCGGCCGTCGC
AAATCTTGGCTTGTCCCTACACAGTACATATTGGGATTCTTCATGATATATCTATCCACT
CAAGTGGACCACTTGCTCGGGAGTACAGATGGCAGAAGCCCCGATGTTGTTGCTCTCACT
GTGACTTTCTTTTTGTTTGAATTCCTGGCAGCCACTCAGGACATCGCTGTGGATGGTTGG
GCGTTAACTATGTTATCCCGGGAAAATGTGGGTTATGCTTCTACTTGCAATTCAGTAGGC
CAAACAGCGGGCTATTTTTTGGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61832387|ref|XP_595974.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61832387|ref|XP_595974.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               155-433, - strand, RNAz p=0.997977
               

               
               594-753, - strand, RNAz p=0.898483

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               155-433, - strand, RNAz p=0.997977
               

               
               594-753, - strand, RNAz p=0.898483

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1104, gnl|bosTau2|chr19 (7574587-7573482)
               

               
               2-1104, gnl|Hg17|chr3 (157054912-157053805)
               

               
               2-1104, gnl|Mm7|chr3 (64110349-64109279)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1104, gnl|bosTau2|chr19 (7574587-7573482)
               

               
               2-1104, gnl|Hg17|chr3 (157054912-157053805)
               

               
               2-1104, gnl|Mm7|chr3 (64110349-64109279)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)
               

               
               cty (0.10408)

	155-433, - strand, RNAz p=0.997977
	594-753, - strand, RNAz p=0.898483

	2-1104, gnl\|bosTau2\|chr19 (7574587-7573482)
	2-1104, gnl\|Hg17\|chr3 (157054912-157053805)
	2-1104, gnl\|Mm7\|chr3 (64110349-64109279)