Non-Coding RNA Search

Ss1.1-Utr1-UTR010061D07.5

Sequence:


               
               TGACCGCCTCGGCGCCGAGACCAAGGCAGACACGACGACAGGGAATAAACCCACAGGAGT
CTTCAGCCGCCTGGGGGCCACCCCAGAGATGGATGAGGATCTGGCTTGGGACAGTGACAA
TGACAGCAGCAGCTCTGTCCTGCAGTATGCCGGGGTCCTGAAGAAGCTAGGCCGGGCCCC
AGCCAAAGCCAGTCACCAACCCACACTGACTGTCAAAGCCAAGGCCACCAGCTCAGCACC
AACGGCTGCCACCCCGACGCTGCGGCGCCTGGCCCTCTCCTCGCGACCCGGGCTGGAGAA
GAAGCCAGAGCCCCTGTCCAAAGTCAGCGTCATCCAGAGACTGGGCAAGACTGCCCTTGT
GCCTGAGGCCCAGGATAGCCAGGTCACGAGCACCAAGAGTAAGTCTTCGGCCGAGGTCAA
AGTCACCATTAAGAGGACTCTGGTGGGGCCCCGGGGGAACAGCTCCAGCGAGGGCCTTGG
TGCCCAGATGGACCACGCGGGCACTGTGAGCGTGTTCAAAAGACTGGGCCGCAGGACCTT
CTAGCCCACGGGCGGGGCGCAGGCCCCTCTCCAGACTCCTGGCTCGCTCAGAGTCTTCAG
CAGGGGGCGCCACCCCCCCCGCTGGCTTCTGGGTGACACTGCTTGTCTCCCTCAGGCATT
CTGCCCGCCTGAGCTTTCTGGGCAGGTGCTCGGTTTCTCTGAGTCTGAAAGGGTCCTGGA
GGCCCGGCCTTGCTGCTCTGGGATTTTCCCTTCTCTCCGGTCCTCCGTTCTCTCCTCTCT
GACCTTGGCCTTGGCAGGACTCACTCCCCTTTCTACCTGTCCAAGCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACCGCCTCGGCGCCGAGACCAAGGCAGACACGACGACAGGGAATAAACCCACAGGAGT
CTTCAGCCGCCTGGGGGCCACCCCAGAGATGGATGAGGATCTGGCTTGGGACAGTGACAA
TGACAGCAGCAGCTCTGTCCTGCAGTATGCCGGGGTCCTGAAGAAGCTAGGCCGGGCCCC
AGCCAAAGCCAGTCACCAACCCACACTGACTGTCAAAGCCAAGGCCACCAGCTCAGCACC
AACGGCTGCCACCCCGACGCTGCGGCGCCTGGCCCTCTCCTCGCGACCCGGGCTGGAGAA
GAAGCCAGAGCCCCTGTCCAAAGTCAGCGTCATCCAGAGACTGGGCAAGACTGCCCTTGT
GCCTGAGGCCCAGGATAGCCAGGTCACGAGCACCAAGAGTAAGTCTTCGGCCGAGGTCAA
AGTCACCATTAAGAGGACTCTGGTGGGGCCCCGGGGGAACAGCTCCAGCGAGGGCCTTGG
TGCCCAGATGGACCACGCGGGCACTGTGAGCGTGTTCAAAAGACTGGGCCGCAGGACCTT
CTAGCCCACGGGCGGGGCGCAGGCCCCTCTCCAGACTCCTGGCTCGCTCAGAGTCTTCAG
CAGGGGGCGCCACCCCCCCCGCTGGCTTCTGGGTGACACTGCTTGTCTCCCTCAGGCATT
CTGCCCGCCTGAGCTTTCTGGGCAGGTGCTCGGTTTCTCTGAGTCTGAAAGGGTCCTGGA
GGCCCGGCCTTGCTGCTCTGGGATTTTCCCTTCTCTCCGGTCCTCCGTTCTCTCCTCTCT
GACCTTGGCCTTGGCAGGACTCACTCCCCTTTCTACCTGTCCAAGCGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61826637|ref|XP_610317.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61826637|ref|XP_610317.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               89-282, - strand, RNAz p=0.67727

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               89-282, - strand, RNAz p=0.67727

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               50-579, gnl|bosTau2|chr18 (41398225-41397693)
               

               
               50-579, gnl|Hg17|chr19 (45520123-45519605)
               

               
               50-579, gnl|Mm7|chr7 (24499640-24500162)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-579, gnl|bosTau2|chr18 (41398225-41397693)
               

               
               50-579, gnl|Hg17|chr19 (45520123-45519605)
               

               
               50-579, gnl|Mm7|chr7 (24499640-24500162)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nep (0.183925)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	50-579, gnl\|bosTau2\|chr18 (41398225-41397693)
	50-579, gnl\|Hg17\|chr19 (45520123-45519605)
	50-579, gnl\|Mm7\|chr7 (24499640-24500162)