Ss1.1-Utr1-UTR010061F01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGTGTGCGCCGCGAGGTGTCGCTTCTGACCTGGGTCTGACGGAGCCGGCTGTGGGCTT CTGGGGTGCTCACCCCTGCCGCCGCCTCCTTCCCTTCCTGTTTCTCGTCCTCTTCTCCCG GGTCCCGGGAGCCCCCGCCCGGGGAGGCGCCCTGCTGAGCTTGGTGCCTGAGCATAGGCG TGGCTGGTGACAGCATGACGAGCGAGGTGATTGAAGATGAGAAGCAATTCTATTCCAAGG CCGAGACGTACTGGAAGGAGGTCCCGCCCACCGTGGACGGCATGCTCGGGGGGTATGGCC ACATCTCCAGCATCGACATCAACAGCTCCCGGAAGTTCCTGCAGAGGTTTCTGAGGGAAG GCCCCAACAAGACGGGGACCTCGTGTGCCCTGGACTGCGGAGCCGGCATCGGGAGGATCA CCAAGCGGCTGCTCTTGCCTCTCTTTGGCGTGGTGGACATGGTGGATGTGACGGAGGACT TCCTGGTCAAGGCGAAGAGCTACCTGGGCGAGGAGGGCAAGAGAGTGAGGAACTACTTCT GCTGTGGCCTCCAGGACTTCAGCCCCGAGCCGCACTCTTACGACGTGATCTGGATCCAGT GGGTGATAGGCCACCTGACTGACCAGCACCTGGCCGAGTTCCTGCGGCGCTGCAAGCGGG GCCTGCGGCCCAACGGCATCATCGTCATCAAAGACAACATGGCCCAGGAGGGCGTGATCC TGGACGACGTGGACAGCAGCGTGTGCCGGGACCTCGACGTGGTGCACAGGATCATCCGCC GCGCGGGCCTCAGCCTCCTGGCCCAGGAGCGGCAGGAGAACCTCCCGGACGAGATCTACC ACGTCTACAGCTTAGCCCTCAGATGAGCGGGGCCGGCGGGAGCGCGGGACCAGTGGGGGC GGGGGGAACTGGCAGTCGGGCGAGGCCCGGAAGCTCCACGTCGACGGTTCGGGAGTGTCA GGCGAGGCCACTAAATATACCTGTGTCTGCCGTCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGTGTGCGCCGCGAGGTGTCGCTTCTGACCTGGGTCTGACGGAGCCGGCTGTGGGCTT CTGGGGTGCTCACCCCTGCCGCCGCCTCCTTCCCTTCCTGTTTCTCGTCCTCTTCTCCCG GGTCCCGGGAGCCCCCGCCCGGGGAGGCGCCCTGCTGAGCTTGGTGCCTGAGCATAGGCG TGGCTGGTGACAGCATGACGAGCGAGGTGATTGAAGATGAGAAGCAATTCTATTCCAAGG CCGAGACGTACTGGAAGGAGGTCCCGCCCACCGTGGACGGCATGCTCGGGGGGTATGGCC ACATCTCCAGCATCGACATCAACAGCTCCCGGAAGTTCCTGCAGAGGTTTCTGAGGGAAG GCCCCAACAAGACGGGGACCTCGTGTGCCCTGGACTGCGGAGCCGGCATCGGGAGGATCA CCAAGCGGCTGCTCTTGCCTCTCTTTGGCGTGGTGGACATGGTGGATGTGACGGAGGACT TCCTGGTCAAGGCGAAGAGCTACCTGGGCGAGGAGGGCAAGAGAGTGAGGAACTACTTCT GCTGTGGCCTCCAGGACTTCAGCCCCGAGCCGCACTCTTACGACGTGATCTGGATCCAGT GGGTGATAGGCCACCTGACTGACCAGCACCTGGCCGAGTTCCTGCGGCGCTGCAAGCGGG GCCTGCGGCCCAACGGCATCATCGTCATCAAAGACAACATGGCCCAGGAGGGCGTGATCC TGGACGACGTGGACAGCAGCGTGTGCCGGGACCTCGACGTGGTGCACAGGATCATCCGCC GCGCGGGCCTCAGCCTCCTGGCCCAGGAGCGGCAGGAGAACCTCCCGGACGAGATCTACC ACGTCTACAGCTTAGCCCTCAGATGAGCGGGGCCGGCGGGAGCGCGGGACCAGTGGGGGC GGGGGGAACTGGCAGTCGGGCGAGGCCCGGAAGCTCCACGTCGACGGTTCGGGAGTGTCA GGCGAGGCCACTAAATATACCTGTGTCTGCCGTCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 647-766, + strand, RNAz p=0.543626 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 647-766, + strand, RNAz p=0.543626 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 1-144, gnl|bosTau2|chr11 (79403921-79404061) | |
| 1-144, gnl|Hg17|chr9 (129467994-129468129) | |
| 1-144, gnl|Mm7|chr2 (30815277-30815395) | |
| 153-362, gnl|bosTau2|chr11 (79409297-79409506) | |
| 153-362, gnl|Hg17|chr9 (129474495-129474704) | |
| 153-362, gnl|Mm7|chr2 (30826948-30827149) | |
| 608-994, gnl|bosTau2|chr11 (79411186-79411567) | |
| 608-994, gnl|canFam2|chr9 (57509316-57509020) | |
| 608-994, gnl|danRer3|chr5 (29534672-29534402) | |
| 608-994, gnl|dasNov1|scaffold_91277 (447-742) | |
| 608-994, gnl|fr1|chrUn (306376749-306376474) | |
| 608-994, gnl|hg17|chr9 (129477018-129477313) | |
| 608-994, gnl|Hg17|chr9 (129477039-129477426) | |
| 608-994, gnl|loxAfr1|scaffold_9775 (14724-15021) | |
| 608-994, gnl|mm7|chr2 (30829654-30829942) | |
| 608-994, gnl|Mm7|chr2 (30829671-30829984) | |
| 608-994, gnl|monDom2|scaffold_51 (4566819-4567115) | |
| 608-994, gnl|oryCun1|scaffold_121350 (3806-4085) | |
| 608-994, gnl|panTro1|chr11 (114337840-114338135) | |
| 608-994, gnl|rheMac2|chr15 (9204633-9204338) | |
| 608-994, gnl|rn3|chr3 (9771787-9772075) | |
| 608-994, gnl|tetNig1|chrUn_random (19354180-19354445) | |
| 608-994, gnl|xenTro1|scaffold_810 (473441-473735) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-144, gnl|bosTau2|chr11 (79403921-79404061) | |
| 1-144, gnl|Hg17|chr9 (129467994-129468129) | |
| 1-144, gnl|Mm7|chr2 (30815277-30815395) | |
| 153-362, gnl|bosTau2|chr11 (79409297-79409506) | |
| 153-362, gnl|Hg17|chr9 (129474495-129474704) | |
| 153-362, gnl|Mm7|chr2 (30826948-30827149) | |
| 608-994, gnl|bosTau2|chr11 (79411186-79411567) | |
| 608-994, gnl|canFam2|chr9 (57509316-57509020) | |
| 608-994, gnl|danRer3|chr5 (29534672-29534402) | |
| 608-994, gnl|dasNov1|scaffold_91277 (447-742) | |
| 608-994, gnl|fr1|chrUn (306376749-306376474) | |
| 608-994, gnl|hg17|chr9 (129477018-129477313) | |
| 608-994, gnl|Hg17|chr9 (129477039-129477426) | |
| 608-994, gnl|loxAfr1|scaffold_9775 (14724-15021) | |
| 608-994, gnl|mm7|chr2 (30829654-30829942) | |
| 608-994, gnl|Mm7|chr2 (30829671-30829984) | |
| 608-994, gnl|monDom2|scaffold_51 (4566819-4567115) | |
| 608-994, gnl|oryCun1|scaffold_121350 (3806-4085) | |
| 608-994, gnl|panTro1|chr11 (114337840-114338135) | |
| 608-994, gnl|rheMac2|chr15 (9204633-9204338) | |
| 608-994, gnl|rn3|chr3 (9771787-9772075) | |
| 608-994, gnl|tetNig1|chrUn_random (19354180-19354445) | |
| 608-994, gnl|xenTro1|scaffold_810 (473441-473735) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| ese (0.253004) | |
| nep (0.183925) | |
| ton (0.1755) | |
| nca (0.136874) | |
| cov (0.132153) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.253004) | |
| nep (0.183925) | |
| ton (0.1755) | |
| nca (0.136874) | |
| cov (0.132153) |