Non-Coding RNA Search

Ss1.1-Utr1-UTR010061H04.5

Sequence:


               
               AAGGGGCTGGATGGGCAAGTTGGGCGCGATGGCTCGAGCCCGGGCAGCGGCAGCTGCGGC
TGGAGGCGGCGGCACGTCCTCCTCGCCCCGGCGCCGGCGGTGATCGGAGCGAGCGGCCGC
GGCCCCCGATGAGACTGTTCGTGGGCTGGCTGTGCCTGAGCCTGGCGTCCGTGTGGCTGG
CGAGGAGGATGTGGACGCTGCGGAGCCCTCTCACCCGCTCCCTGTACGTGAACATGACGA
GCGGCCCGGGCGGGCCGGCGGCGGCCGCGGGTGGCAGGAAGGACAACCACCAGTGGTATG
TGTGCAACAGAGAGAAATTATGTGAATCACTCCAGGCTGTCTTTGTTCAGAGTTACCTTG
ATCAAGGAACACAGATCTTCTTAAACAACAGCATTGAGAAATCGGGCTGGCTATTTATCC
AATTATATCATTCTTTTGTGTCATCTGTTTTTAGCCTGTTTATGTCTAGAACATCTATCA
ATGGGTTGCTAGGAAGAGGCTCAATGTTTGTGTTTTCACCAGATCAGTTTCAGAGACTGC
TTAAAATTAATCCAGATTGGAAAACCCATAGACTCCTTGATTTAGGTGCTGGAGATGGCG
AAGTCACAAAAATCATGAGCCCTCATTTTGAAGAAATTTATGCCACCGAGCTGTCAGAAA
CGATGATATGGCAGCTTCAGAAGAAGAAATACAGAGTGCTGGGTATAAATGAGTGGCAGA
ATACAGGGTTCCAGTATGATGTCATCAGCTGCTTGAATTTGCTGGACCGCTGTGATCAGC
CCCTGACTTTGCTGAAAGATATCAGAAGTGTCTTGGAGCCAACCCGAGGCAGGGTCATCC
TTGCTCTGGTTTTACCCTTTCATCCGTATGTGGAAAACGTAGGTGGCAAGTGGGATAAAC
CATCCGAAATTTTGGAAATCAAGGGACAGAACTGGGAAGAGCAAGTGAACAGTCTGCCTG
AGGTTTTCAGAAAAGCTGGGTTTGTCATCGAAGCGTTCACCAGACTGCCATACCTGTGTG
AAGGCGACATGTACAATGACTACTACGTTTTGGACGACGCTGTCTTTGTCCTCAAACCAG
TATAAGCGTGTGGCGATCGCAGTCTTCGGGGTCCCCCCCCAAGAACGTACGCTCCAGGAG
AGGGTCTGCGTCCTCAATGACACGAAGGGAGGACCTTTGGGGGCTGCCGTTCCCGAGTAT
CACGTAGGAATTTCAAAAGCCAAAATACTAATTATCTCTTTGTAGTGCGTAAAAGGAATG
TTTTTAAAACACAGCAGCCCAACTCTTTGAGGATTTTTATCACCTCTTGACTCAGTAATG
CAGGTCACTCTCCAATGACGGAAGATATTTTTTATACTTAAGTGCAGTAGGGACTCCTTC
GCAGTCAAAGCAATAGTCATGACTTCACATGGAACCAATAACTATGGATCGTTTTTAACA
CAGTGAAGACTGGCAGTAAAGCTGTCCAGCCAGTTGCAAGTATTGGTTCTAAGTTATAGC
CACTGATGCTCTCTCCTGTTTAGAACTTCTATCATTATCCAAGAAAATGTTTTTAATCAT
GCTAATAAACTTTTTTGGAGATGAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGGGCTGGATGGGCAAGTTGGGCGCGATGGCTCGAGCCCGGGCAGCGGCAGCTGCGGC
TGGAGGCGGCGGCACGTCCTCCTCGCCCCGGCGCCGGCGGTGATCGGAGCGAGCGGCCGC
GGCCCCCGATGAGACTGTTCGTGGGCTGGCTGTGCCTGAGCCTGGCGTCCGTGTGGCTGG
CGAGGAGGATGTGGACGCTGCGGAGCCCTCTCACCCGCTCCCTGTACGTGAACATGACGA
GCGGCCCGGGCGGGCCGGCGGCGGCCGCGGGTGGCAGGAAGGACAACCACCAGTGGTATG
TGTGCAACAGAGAGAAATTATGTGAATCACTCCAGGCTGTCTTTGTTCAGAGTTACCTTG
ATCAAGGAACACAGATCTTCTTAAACAACAGCATTGAGAAATCGGGCTGGCTATTTATCC
AATTATATCATTCTTTTGTGTCATCTGTTTTTAGCCTGTTTATGTCTAGAACATCTATCA
ATGGGTTGCTAGGAAGAGGCTCAATGTTTGTGTTTTCACCAGATCAGTTTCAGAGACTGC
TTAAAATTAATCCAGATTGGAAAACCCATAGACTCCTTGATTTAGGTGCTGGAGATGGCG
AAGTCACAAAAATCATGAGCCCTCATTTTGAAGAAATTTATGCCACCGAGCTGTCAGAAA
CGATGATATGGCAGCTTCAGAAGAAGAAATACAGAGTGCTGGGTATAAATGAGTGGCAGA
ATACAGGGTTCCAGTATGATGTCATCAGCTGCTTGAATTTGCTGGACCGCTGTGATCAGC
CCCTGACTTTGCTGAAAGATATCAGAAGTGTCTTGGAGCCAACCCGAGGCAGGGTCATCC
TTGCTCTGGTTTTACCCTTTCATCCGTATGTGGAAAACGTAGGTGGCAAGTGGGATAAAC
CATCCGAAATTTTGGAAATCAAGGGACAGAACTGGGAAGAGCAAGTGAACAGTCTGCCTG
AGGTTTTCAGAAAAGCTGGGTTTGTCATCGAAGCGTTCACCAGACTGCCATACCTGTGTG
AAGGCGACATGTACAATGACTACTACGTTTTGGACGACGCTGTCTTTGTCCTCAAACCAG
TATAAGCGTGTGGCGATCGCAGTCTTCGGGGTCCCCCCCCAAGAACGTACGCTCCAGGAG
AGGGTCTGCGTCCTCAATGACACGAAGGGAGGACCTTTGGGGGCTGCCGTTCCCGAGTAT
CACGTAGGAATTTCAAAAGCCAAAATACTAATTATCTCTTTGTAGTGCGTAAAAGGAATG
TTTTTAAAACACAGCAGCCCAACTCTTTGAGGATTTTTATCACCTCTTGACTCAGTAATG
CAGGTCACTCTCCAATGACGGAAGATATTTTTTATACTTAAGTGCAGTAGGGACTCCTTC
GCAGTCAAAGCAATAGTCATGACTTCACATGGAACCAATAACTATGGATCGTTTTTAACA
CAGTGAAGACTGGCAGTAAAGCTGTCCAGCCAGTTGCAAGTATTGGTTCTAAGTTATAGC
CACTGATGCTCTCTCCTGTTTAGAACTTCTATCATTATCCAAGAAAATGTTTTTAATCAT
GCTAATAAACTTTTTTGGAGATGAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|12227254|emb|CAC21450.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12227254|emb|CAC21450.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               879-997, + strand, RNAz p=0.940541

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               879-997, + strand, RNAz p=0.940541

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-293, gnl|bosTau2|chr25 (18628704-18628408)
               

               
               1-293, gnl|Hg17|chr16 (21518424-21518720)
               

               
               1-293, gnl|Mm7|chr7 (116956955-116957258)
               


               
               484-694, gnl|bosTau2|chr25 (18612121-18611911)
               

               
               484-694, gnl|Hg17|chr16 (21536686-21536896)
               

               
               484-694, gnl|Mm7|chr7 (116974369-116974579)
               


               
               879-1584, gnl|bosTau2|chr25 (18583366-18582663)
               

               
               879-1584, gnl|Hg17|chr16 (21574048-21574758)
               

               
               879-1584, gnl|Mm7|chr7 (116998412-116999118)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-293, gnl|bosTau2|chr25 (18628704-18628408)
               

               
               1-293, gnl|Hg17|chr16 (21518424-21518720)
               

               
               1-293, gnl|Mm7|chr7 (116956955-116957258)
               


               
               484-694, gnl|bosTau2|chr25 (18612121-18611911)
               

               
               484-694, gnl|Hg17|chr16 (21536686-21536896)
               

               
               484-694, gnl|Mm7|chr7 (116974369-116974579)
               


               
               879-1584, gnl|bosTau2|chr25 (18583366-18582663)
               

               
               879-1584, gnl|Hg17|chr16 (21574048-21574758)
               

               
               879-1584, gnl|Mm7|chr7 (116998412-116999118)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

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               elu (0.385356)
               

               
               cty (0.31224)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               ute (0.265569)
               

               
               ova (0.258264)
               

               
               eep (0.245128)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               cty (0.31224)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               ute (0.265569)
               

               
               ova (0.258264)
               

               
               eep (0.245128)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

	1-293, gnl\|bosTau2\|chr25 (18628704-18628408)
	1-293, gnl\|Hg17\|chr16 (21518424-21518720)
	1-293, gnl\|Mm7\|chr7 (116956955-116957258)

	484-694, gnl\|bosTau2\|chr25 (18612121-18611911)
	484-694, gnl\|Hg17\|chr16 (21536686-21536896)
	484-694, gnl\|Mm7\|chr7 (116974369-116974579)

	879-1584, gnl\|bosTau2\|chr25 (18583366-18582663)
	879-1584, gnl\|Hg17\|chr16 (21574048-21574758)
	879-1584, gnl\|Mm7\|chr7 (116998412-116999118)

	elu (0.385356)
	cty (0.31224)
	pty (0.285429)
	lnt (0.284616)
	ute (0.265569)
	ova (0.258264)
	eep (0.245128)
	ecc (0.23007)
	ece (0.229305)
	hea (0.204499)
	fcc (0.197785)
	eje (0.197668)
	hyp (0.142837)
	hlv (0.139256)
	ebs (0.118301)
	jca (0.11396)