Ss1.1-Utr1-UTR010061H09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATATTTCTGCCAAAGACACACCAGCCCTCAGTCACTGGGAGAAGGACCTCTCTTACCCT CGGTGCTCCAGCCCCCGGTTCACTCGGCTGCACTCACCATGTGTGAAGAGGAGACCACCG CGCTTGTGTGTGACAATGGCTCTGGCCTGTGCAAGGCTGGCTTCGCAGGAGATGACGCTC CCCGGGCCGTCTTTCCTTCCATCGTGGGTCGCCCTCGCCACCAGGGTGTAATGGTGGGAA TGGGCCAGAAAGACAGCTACGTGGGGGATGAGGCTCAGAGCAAGCGAGGGATCCTAACTC TCAAATACCCCATTGAACACGGCATCATCACCAACTGGGATGACATGGAGAAGATCTGGC ACCACTCCTTCTACAACGAGCTGCGGGTAGCACCTGAGGAGCACCCCACCCTGCTCACGG AGGCCCCCCTAAATCCCAAGGCCAACAGGGAGAAGATGACCCAGATCATGTTCGAAACCT TCAATGTCCCTGCCATGTACGTTGCCATTCAAGCTGTGCTCTCCCTCTATGCTTCCGGCC GCACAACAGGCATCGTCCTGGATTCCGGGGATGGCGTCACCCACAATGTCCCTATCTATG AGGGATACGCACTGCCCCACGCCATCATGCGCCTGGATCTGGCTGGCCGCGACCTCACGG ACTACCTCATGAAGATCCTCACAGAGAGAGGCTACTCCTTTGTGACCACAGCTGAACGAG AAATCGTGCGAGACATCAAGGAGAAGCTGTGCTATGTGGCCCTGGACTTTGAGAACGAGA TGGCCACGGCAGCCTCCTCTTCCTCCCTGGAGAAGAGCTATGAGCTGCCGGACGGACAGG TCATCACCATCGGCAATGAGCGCTTCCGCTGCCCGGAGACCCTCTTCCAGCCCTCCTTCA TCGGCATGGAGTCAGCTGGAATTCATGAAACAACCTACAATTCCATCATGAAGTGTGACA TTGACATCCGCAAAGACTTATACGCCAACAACGTCCTCTCTGGGGGTACCACTATGTATC CTGGCATTGCCGACAGGATGCAGAAGGAGATCACAGCCCTGGCCCCCAGTACCATGAAGA TCAAGATTATTGCTCCCCCAGAGCGGAAGTACTCGGTCTGGATCGGAGGCTCTATCCTGG CCTCTCTCTCCACCTTCCAGCAGATGTGGATCAGCAAGCCAGAGTATGACGAGGCAGGGC CTTCCATTGTCCACAGGAAGTGCTTCTAGAGTGAGAGCAGATTCTCTGGGGATCTCCTGG AGACTTCTCTGTCAACAACCATGAAACATTAAAACCTGCAAGCCTTAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATATTTCTGCCAAAGACACACCAGCCCTCAGTCACTGGGAGAAGGACCTCTCTTACCCT CGGTGCTCCAGCCCCCGGTTCACTCGGCTGCACTCACCATGTGTGAAGAGGAGACCACCG CGCTTGTGTGTGACAATGGCTCTGGCCTGTGCAAGGCTGGCTTCGCAGGAGATGACGCTC CCCGGGCCGTCTTTCCTTCCATCGTGGGTCGCCCTCGCCACCAGGGTGTAATGGTGGGAA TGGGCCAGAAAGACAGCTACGTGGGGGATGAGGCTCAGAGCAAGCGAGGGATCCTAACTC TCAAATACCCCATTGAACACGGCATCATCACCAACTGGGATGACATGGAGAAGATCTGGC ACCACTCCTTCTACAACGAGCTGCGGGTAGCACCTGAGGAGCACCCCACCCTGCTCACGG AGGCCCCCCTAAATCCCAAGGCCAACAGGGAGAAGATGACCCAGATCATGTTCGAAACCT TCAATGTCCCTGCCATGTACGTTGCCATTCAAGCTGTGCTCTCCCTCTATGCTTCCGGCC GCACAACAGGCATCGTCCTGGATTCCGGGGATGGCGTCACCCACAATGTCCCTATCTATG AGGGATACGCACTGCCCCACGCCATCATGCGCCTGGATCTGGCTGGCCGCGACCTCACGG ACTACCTCATGAAGATCCTCACAGAGAGAGGCTACTCCTTTGTGACCACAGCTGAACGAG AAATCGTGCGAGACATCAAGGAGAAGCTGTGCTATGTGGCCCTGGACTTTGAGAACGAGA TGGCCACGGCAGCCTCCTCTTCCTCCCTGGAGAAGAGCTATGAGCTGCCGGACGGACAGG TCATCACCATCGGCAATGAGCGCTTCCGCTGCCCGGAGACCCTCTTCCAGCCCTCCTTCA TCGGCATGGAGTCAGCTGGAATTCATGAAACAACCTACAATTCCATCATGAAGTGTGACA TTGACATCCGCAAAGACTTATACGCCAACAACGTCCTCTCTGGGGGTACCACTATGTATC CTGGCATTGCCGACAGGATGCAGAAGGAGATCACAGCCCTGGCCCCCAGTACCATGAAGA TCAAGATTATTGCTCCCCCAGAGCGGAAGTACTCGGTCTGGATCGGAGGCTCTATCCTGG CCTCTCTCTCCACCTTCCAGCAGATGTGGATCAGCAAGCCAGAGTATGACGAGGCAGGGC CTTCCATTGTCCACAGGAAGTGCTTCTAGAGTGAGAGCAGATTCTCTGGGGATCTCCTGG AGACTTCTCTGTCAACAACCATGAAACATTAAAACCTGCAAGCCTTAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 223-342, - strand, RNAz p=0.569171 | |
| 697-815, + strand, RNAz p=0.878604 | |
| 777-904, - strand, RNAz p=0.678859 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 223-342, - strand, RNAz p=0.569171 | |
| 697-815, + strand, RNAz p=0.878604 | |
| 777-904, - strand, RNAz p=0.678859 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 223-550, gnl|bosTau2|chr10 (19086812-19086485) | |
| 223-550, gnl|canFam2|chr30 (5506751-5507104) | |
| 223-550, gnl|dasNov1|scaffold_19757 (44022-43669) | |
| 223-550, gnl|echTel1|scaffold_318944 (3386-3034) | |
| 223-550, gnl|fr1|chrUn (63305598-63305946) | |
| 223-550, gnl|galGal2|chr5 (29145784-29145442) | |
| 223-550, gnl|hg17|chr15 (32872717-32873069) | |
| 223-550, gnl|Hg17|chr15 (32873064-32872737) | |
| 223-550, gnl|loxAfr1|scaffold_10024 (29037-28725) | |
| 223-550, gnl|mm7|chr2 (113791108-113791460) | |
| 223-550, gnl|Mm7|chr2 (113791455-113791128) | |
| 223-550, gnl|monDom2|scaffold_12 (9572456-9572112) | |
| 223-550, gnl|oryCun1|scaffold_179293 (445-93) | |
| 223-550, gnl|panTro1|chr16 (32653340-32653692) | |
| 223-550, gnl|rheMac2|chr7 (13132136-13132488) | |
| 223-550, gnl|rn3|chr3 (99800397-99800748) | |
| 223-550, gnl|tetNig1|chr10 (7897220-7896871) | |
| 223-550, gnl|xenTro1|scaffold_199 (677786-677445) | |
| 697-904, gnl|bosTau2|chr10 (19085497-19085290) | |
| 697-904, gnl|canFam2|chr30 (5505628-5505833) | |
| 697-904, gnl|danRer3|chr14 (32886032-32885827) | |
| 697-904, gnl|dasNov1|scaffold_1043 (13637-13827) | |
| 697-904, gnl|echTel1|scaffold_318944 (4473-4268) | |
| 697-904, gnl|fr1|chrUn (63305079-63305280) | |
| 697-904, gnl|galGal2|chr5 (29146862-29146670) | |
| 697-904, gnl|hg17|chr15 (32871574-32871779) | |
| 697-904, gnl|Hg17|chr15 (32871789-32871582) | |
| 697-904, gnl|loxAfr1|scaffold_10024 (29791-29599) | |
| 697-904, gnl|mm7|chr2 (113790000-113790205) | |
| 697-904, gnl|Mm7|chr2 (113790215-113790008) | |
| 697-904, gnl|monDom2|scaffold_12 (9573880-9573675) | |
| 697-904, gnl|oryCun1|scaffold_214311 (43778-43970) | |
| 697-904, gnl|panTro1|chr16 (32652195-32652400) | |
| 697-904, gnl|rheMac2|chr7 (13130989-13131194) | |
| 697-904, gnl|rn3|chr3 (99799298-99799503) | |
| 697-904, gnl|tetNig1|chr10 (7897776-7897575) | |
| 697-904, gnl|xenTro1|scaffold_199 (679801-679596) | |
| 1084-1233, gnl|bosTau2|chr10 (19083781-19083632) | |
| 1084-1233, gnl|canFam2|chr30 (5503985-5504181) | |
| 1084-1233, gnl|danRer3|chr14 (32888947-32888749) | |
| 1084-1233, gnl|dasNov1|scaffold_19757 (46926-46730) | |
| 1084-1233, gnl|echTel1|scaffold_318944 (6298-6097) | |
| 1084-1233, gnl|fr1|chrUn (63304276-63304437) | |
| 1084-1233, gnl|galGal2|chr5 (29148742-29148542) | |
| 1084-1233, gnl|hg17|chr15 (32869867-32870064) | |
| 1084-1233, gnl|Hg17|chr15 (32870050-32869901) | |
| 1084-1233, gnl|loxAfr1|scaffold_10024 (30384-30190) | |
| 1084-1233, gnl|mm7|chr2 (113788269-113788465) | |
| 1084-1233, gnl|Mm7|chr2 (113788451-113788302) | |
| 1084-1233, gnl|monDom2|scaffold_12 (9576524-9576327) | |
| 1084-1233, gnl|oryCun1|scaffold_179293 (3266-3069) | |
| 1084-1233, gnl|panTro1|chr16 (32650491-32650688) | |
| 1084-1233, gnl|rheMac2|chr7 (13129319-13129512) | |
| 1084-1233, gnl|rn3|chr3 (99797588-99797772) | |
| 1084-1233, gnl|tetNig1|chr10 (7898617-7898430) | |
| 1084-1233, gnl|xenTro1|scaffold_199 (681082-680896) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 223-550, gnl|bosTau2|chr10 (19086812-19086485) | |
| 223-550, gnl|canFam2|chr30 (5506751-5507104) | |
| 223-550, gnl|dasNov1|scaffold_19757 (44022-43669) | |
| 223-550, gnl|echTel1|scaffold_318944 (3386-3034) | |
| 223-550, gnl|fr1|chrUn (63305598-63305946) | |
| 223-550, gnl|galGal2|chr5 (29145784-29145442) | |
| 223-550, gnl|hg17|chr15 (32872717-32873069) | |
| 223-550, gnl|Hg17|chr15 (32873064-32872737) | |
| 223-550, gnl|loxAfr1|scaffold_10024 (29037-28725) | |
| 223-550, gnl|mm7|chr2 (113791108-113791460) | |
| 223-550, gnl|Mm7|chr2 (113791455-113791128) | |
| 223-550, gnl|monDom2|scaffold_12 (9572456-9572112) | |
| 223-550, gnl|oryCun1|scaffold_179293 (445-93) | |
| 223-550, gnl|panTro1|chr16 (32653340-32653692) | |
| 223-550, gnl|rheMac2|chr7 (13132136-13132488) | |
| 223-550, gnl|rn3|chr3 (99800397-99800748) | |
| 223-550, gnl|tetNig1|chr10 (7897220-7896871) | |
| 223-550, gnl|xenTro1|scaffold_199 (677786-677445) | |
| 697-904, gnl|bosTau2|chr10 (19085497-19085290) | |
| 697-904, gnl|canFam2|chr30 (5505628-5505833) | |
| 697-904, gnl|danRer3|chr14 (32886032-32885827) | |
| 697-904, gnl|dasNov1|scaffold_1043 (13637-13827) | |
| 697-904, gnl|echTel1|scaffold_318944 (4473-4268) | |
| 697-904, gnl|fr1|chrUn (63305079-63305280) | |
| 697-904, gnl|galGal2|chr5 (29146862-29146670) | |
| 697-904, gnl|hg17|chr15 (32871574-32871779) | |
| 697-904, gnl|Hg17|chr15 (32871789-32871582) | |
| 697-904, gnl|loxAfr1|scaffold_10024 (29791-29599) | |
| 697-904, gnl|mm7|chr2 (113790000-113790205) | |
| 697-904, gnl|Mm7|chr2 (113790215-113790008) | |
| 697-904, gnl|monDom2|scaffold_12 (9573880-9573675) | |
| 697-904, gnl|oryCun1|scaffold_214311 (43778-43970) | |
| 697-904, gnl|panTro1|chr16 (32652195-32652400) | |
| 697-904, gnl|rheMac2|chr7 (13130989-13131194) | |
| 697-904, gnl|rn3|chr3 (99799298-99799503) | |
| 697-904, gnl|tetNig1|chr10 (7897776-7897575) | |
| 697-904, gnl|xenTro1|scaffold_199 (679801-679596) | |
| 1084-1233, gnl|bosTau2|chr10 (19083781-19083632) | |
| 1084-1233, gnl|canFam2|chr30 (5503985-5504181) | |
| 1084-1233, gnl|danRer3|chr14 (32888947-32888749) | |
| 1084-1233, gnl|dasNov1|scaffold_19757 (46926-46730) | |
| 1084-1233, gnl|echTel1|scaffold_318944 (6298-6097) | |
| 1084-1233, gnl|fr1|chrUn (63304276-63304437) | |
| 1084-1233, gnl|galGal2|chr5 (29148742-29148542) | |
| 1084-1233, gnl|hg17|chr15 (32869867-32870064) | |
| 1084-1233, gnl|Hg17|chr15 (32870050-32869901) | |
| 1084-1233, gnl|loxAfr1|scaffold_10024 (30384-30190) | |
| 1084-1233, gnl|mm7|chr2 (113788269-113788465) | |
| 1084-1233, gnl|Mm7|chr2 (113788451-113788302) | |
| 1084-1233, gnl|monDom2|scaffold_12 (9576524-9576327) | |
| 1084-1233, gnl|oryCun1|scaffold_179293 (3266-3069) | |
| 1084-1233, gnl|panTro1|chr16 (32650491-32650688) | |
| 1084-1233, gnl|rheMac2|chr7 (13129319-13129512) | |
| 1084-1233, gnl|rn3|chr3 (99797588-99797772) | |
| 1084-1233, gnl|tetNig1|chr10 (7898617-7898430) | |
| 1084-1233, gnl|xenTro1|scaffold_199 (681082-680896) |
| Expressed library(ies): 32 entry(ies) | More info |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
| nco (4.85201) | |
| bla (3.85476) | |
| eje (1.77901) | |
| nje (1.6592) | |
| eru (1.56062) | |
| elu (1.54143) | |
| cov (1.32153) | |
| ute (0.929491) | |
| cut (0.849618) | |
| nep (0.7357) | |
| gul (0.710353) | |
| csp (0.644745) | |
| clu (0.598229) | |
| sto (0.539471) | |
| pro (0.512033) | |
| nlu (0.383362) | |
| rec (0.346141) | |
| jej (0.296765) | |
| cga (0.279096) | |
| cly (0.241284) | |
| mas (0.210305) | |
| col (0.195008) | |
| sin (0.174948) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| tra (0.123092) |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (4.85201) | |
| bla (3.85476) | |
| eje (1.77901) | |
| nje (1.6592) | |
| eru (1.56062) | |
| elu (1.54143) | |
| cov (1.32153) | |
| ute (0.929491) | |
| cut (0.849618) | |
| nep (0.7357) | |
| gul (0.710353) | |
| csp (0.644745) | |
| clu (0.598229) | |
| sto (0.539471) | |
| pro (0.512033) | |
| nlu (0.383362) | |
| rec (0.346141) | |
| jej (0.296765) | |
| cga (0.279096) | |
| cly (0.241284) | |
| mas (0.210305) | |
| col (0.195008) | |
| sin (0.174948) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| tra (0.123092) |