Non-Coding RNA Search

Ss1.1-Utr1-UTR010062A06.5

Sequence:


               
               TTTCAGAACTGTCGTGAAAGGGGGCGGGGCGCGTCAGGCTAGAGCCAACGCCAGAGGCCC
ACGACGCTCCCGGGGCGGCTAGCTGGCTGCTGGCGCCATGGAGCGTTACGCTGGCGCTTT
GGAGGAGGCGATGGACGGGGCCCGGCAGCAGGAGCGGCACTACCAGCTGCTCTCTGCGCT
GCAGGGCCTAGTCAAGGAGCTGCCCAGCTCTTTCCAGCAGCGCCTGTCTTACACCACGCT
CAGCGACCTGGCCCTGGCGCTCCTCGACGGCACCGTGTTCGAAATCGTGCAGGGGCTGCT
GGAGATCCAGCACCTCACCGAGAAGAGCCTGTACAACCAGCGCCTGCGGCTGCAGAACGA
GCACCGAGTGCTCAGGCAGGCGCTGCGGCAGAAGCACCAGGAAGCCCAGCAGGCCTGCCG
GCCCCACAACCTGCCCGTGCTCCAGGCAGCTCAGCAGCGCGAGCTAGAGGCCGTGGAGCA
CCGGATCCGTGAGGAGCAGCGGGCAATGGACCAGAAGATCGTCCTGGAGCTGGACCGGAA
GGTGGCAGACCAGCAGAGCACACTGGAGAAGGCAGGGGTCGCTGGCTTCTATGTAACCAC
CAACCCTCAGGAGCTGACACTACAGATGAACCTACTGGAGCTCATTCGGAAGCTGCAACA
GAGGGGCTGCCAGACAGGCAAGGCGGCCCTGTGACCAGGCAAGGTTTTTGCCAGTGACTG
CTGCTCTTGGTGGCTGGGAAGACAGCCCTGTCCCACAGTCACCTAAGGCAGCAGAAAGCT
GAGTGGCACTTGTCTTCCTGAAGTCTGGCTGCCACCTTCCCAGCTGCCTGCAGGAGAGGT
GCCCTGTAGGGAGAAGCTGGATGGACTTGGCTGCACCAGCCACCCACCTTCATTTGGGTT
TTTTGTCCAGAGCTAGGGTGGTAAGGTGAGGGGAAGAGCGGGCCCGCCTTCTGGCTGTCT
GCCCCAGGTTTCCCGTTTGTTCTGGTCTCAGGCTCTCCCTTGGCAGGTGCAGCCCCCACC
TGGGAAAGGCTCCCAAGCTCTATGTGACCCCCAAGAAATAAAGACACCTCAGTATGGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCAGAACTGTCGTGAAAGGGGGCGGGGCGCGTCAGGCTAGAGCCAACGCCAGAGGCCC
ACGACGCTCCCGGGGCGGCTAGCTGGCTGCTGGCGCCATGGAGCGTTACGCTGGCGCTTT
GGAGGAGGCGATGGACGGGGCCCGGCAGCAGGAGCGGCACTACCAGCTGCTCTCTGCGCT
GCAGGGCCTAGTCAAGGAGCTGCCCAGCTCTTTCCAGCAGCGCCTGTCTTACACCACGCT
CAGCGACCTGGCCCTGGCGCTCCTCGACGGCACCGTGTTCGAAATCGTGCAGGGGCTGCT
GGAGATCCAGCACCTCACCGAGAAGAGCCTGTACAACCAGCGCCTGCGGCTGCAGAACGA
GCACCGAGTGCTCAGGCAGGCGCTGCGGCAGAAGCACCAGGAAGCCCAGCAGGCCTGCCG
GCCCCACAACCTGCCCGTGCTCCAGGCAGCTCAGCAGCGCGAGCTAGAGGCCGTGGAGCA
CCGGATCCGTGAGGAGCAGCGGGCAATGGACCAGAAGATCGTCCTGGAGCTGGACCGGAA
GGTGGCAGACCAGCAGAGCACACTGGAGAAGGCAGGGGTCGCTGGCTTCTATGTAACCAC
CAACCCTCAGGAGCTGACACTACAGATGAACCTACTGGAGCTCATTCGGAAGCTGCAACA
GAGGGGCTGCCAGACAGGCAAGGCGGCCCTGTGACCAGGCAAGGTTTTTGCCAGTGACTG
CTGCTCTTGGTGGCTGGGAAGACAGCCCTGTCCCACAGTCACCTAAGGCAGCAGAAAGCT
GAGTGGCACTTGTCTTCCTGAAGTCTGGCTGCCACCTTCCCAGCTGCCTGCAGGAGAGGT
GCCCTGTAGGGAGAAGCTGGATGGACTTGGCTGCACCAGCCACCCACCTTCATTTGGGTT
TTTTGTCCAGAGCTAGGGTGGTAAGGTGAGGGGAAGAGCGGGCCCGCCTTCTGGCTGTCT
GCCCCAGGTTTCCCGTTTGTTCTGGTCTCAGGCTCTCCCTTGGCAGGTGCAGCCCCCACC
TGGGAAAGGCTCCCAAGCTCTATGTGACCCCCAAGAAATAAAGACACCTCAGTATGGCCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|47678399|emb|CAG30320.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|47678399|emb|CAG30320.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               605-722, - strand, RNAz p=0.657973
               

               
               763-919, + strand, RNAz p=0.810173

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               605-722, - strand, RNAz p=0.657973
               

               
               763-919, + strand, RNAz p=0.810173

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of BC047039, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC047039, +

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

Help | Less info


               
               84-358, gnl|bosTau2|chr15 (45887691-45887418)
               

               
               84-358, gnl|Hg17|chr22 (17268430-17268786)
               

               
               84-358, gnl|Mm7|chr16 (17616206-17616583)
               


               
               364-470, gnl|bosTau2|chr17 (45889529-45889635)
               

               
               364-470, gnl|Hg17|chr22 (17272234-17272340)
               

               
               364-470, gnl|Mm7|chr16 (17619152-17619258)
               


               
               605-1080, gnl|bosTau2|chr17 (45891035-45891471)
               

               
               605-1080, gnl|Hg17|chr22 (17273601-17274152)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               84-358, gnl|bosTau2|chr15 (45887691-45887418)
               

               
               84-358, gnl|Hg17|chr22 (17268430-17268786)
               

               
               84-358, gnl|Mm7|chr16 (17616206-17616583)
               


               
               364-470, gnl|bosTau2|chr17 (45889529-45889635)
               

               
               364-470, gnl|Hg17|chr22 (17272234-17272340)
               

               
               364-470, gnl|Mm7|chr16 (17619152-17619258)
               


               
               605-1080, gnl|bosTau2|chr17 (45891035-45891471)
               

               
               605-1080, gnl|Hg17|chr22 (17273601-17274152)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

Help | Less info


               
               cov (0.396458)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               nep (0.36785)
               

               
               ebs (0.354904)
               

               
               nje (0.33184)
               

               
               nca (0.273748)
               

               
               eep (0.245128)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.396458)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               nep (0.36785)
               

               
               ebs (0.354904)
               

               
               nje (0.33184)
               

               
               nca (0.273748)
               

               
               eep (0.245128)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	605-722, - strand, RNAz p=0.657973
	763-919, + strand, RNAz p=0.810173

	84-358, gnl\|bosTau2\|chr15 (45887691-45887418)
	84-358, gnl\|Hg17\|chr22 (17268430-17268786)
	84-358, gnl\|Mm7\|chr16 (17616206-17616583)

	364-470, gnl\|bosTau2\|chr17 (45889529-45889635)
	364-470, gnl\|Hg17\|chr22 (17272234-17272340)
	364-470, gnl\|Mm7\|chr16 (17619152-17619258)

	605-1080, gnl\|bosTau2\|chr17 (45891035-45891471)
	605-1080, gnl\|Hg17\|chr22 (17273601-17274152)

	cov (0.396458)
	elu (0.385356)
	nlu (0.383362)
	nep (0.36785)
	ebs (0.354904)
	nje (0.33184)
	nca (0.273748)
	eep (0.245128)
	ton (0.1755)
	fbs (0.175346)
	mcp (0.170648)
	fhi (0.169578)
	cag (0.151194)
	ste (0.135208)
	pla (0.133672)
	nmm (0.132802)
	eru (0.120048)
	clu (0.119646)
	cty (0.10408)
	eje (0.0988338)