Non-Coding RNA Search

Ss1.1-Utr1-UTR010062A11.5.9

Sequence:


               
               CTTCCTTTCTCCAATTTTGCAAGGTAGAACGCAGTAGAGTAGGTTCCGGAAGCCCAGCAC
AGCTGGAGCAGCAGAGGCCGCAGCTGGAGGCGGGAAGAGGCGAGCGTCTGCCCTGAGGAA
GGGCAGGGTGTTCGCACCCCCCGCGCCCGGCTCACAGCTGGGTTAGCCCATGCTCTGGTC
GGCATTGAGCTTTAACATCTGGGACCCGGCTGGGGCAGCGGAGACCTGCGCGCAGTGGGC
GCGGCCAATGCGCCAGGCTGGAGGGTGAGCGTCGCGCCGGGTCTGGGACAGAGTTGGCAC
CTCCGGATAAGGCCCAGAGCGGCCAAGGGGCCTCCGCGATGCCAGGCGAAAATATCTTCC
TGTTTGTGCCTAACCTTATTGGTTATGCCCGGATTGTCTTCGCCATCATTTCTTTCTACT
TCATGCCCTGCTGCCCCTTCACGGCCTCCTCCTTCTACCTGCTCAGCGGACTTCTGGACG
CTTTTGATGGACACGCTGCTCGAGTCCTTAATCAAGGGACCCGGTTTGGGGCCATGCTGG
ACATGTTGACAGACCGCTGCTCCACCATGTGTCTGCTGGTCAACCTGGCCCTGCTGTACC
CTCGAGCCACCCTTCTCTTCCAGCTCAGCATGAGCTTGGATGTGGCCAGCCACTGGCTGC
ACCTTCACAGTTCTGTGGTCCGAGGCAGTGAAAGTCACAAGATGATTGACCTGTCGGGAA
ATCCAGTGCTTCGCATCTACTACACCTCCAGGCCTGCTCTGTTTACCCTGTGTGCGGGAA
ATGAGCTCTTCTACTGCCTCCTCTACCTGTTCAATTTCTCCGAGGGCCCTTTAGTGGGCT
CTGTGGGCCTTTTCCGGATGGGCCTCTGGGTCACCGCCCCTGTGGCTTTGCTCAAGTCCC
TCATCAGTGTCATCCACCTGATCACGGCCGCCCGCAACATGGCAGCCCTGGACGCAGCAG
ATCGTGCCAAGAAGAAGTGACTTTGGAACCTCCAGCCCCCGGCTGCCCACCTGCCCTGGA
AGTCTCACGGTGCCACGCGGCTTCCCTGTCCCTCCCAGGAGGTCCCAGGCTTCCTAATGT
ATCGTCCAACCTGCTGGGGGAGGGGGGGTGCGGCGGCGGGGGGCGGTCTCGTTGGTGATG
TCGCCGAATCCTAAGGACCCGTCCCACCCCTGTGATCTCCAAGGTCCTGGACCTCAAATC
AGGAAGGATGCTCGGGGGCCCCAAGAGAGTGGTCTGAGGACTGGGCGTTGTCACAGCTGC
TGGCTCAGCTCTGGGGTCTGGCGTGAGTGGGACACTTGAGTGAGGGGGTGGAGGAGGTGT
CCCATAAGGCAGGGATCCAGACCTCTGCCCCTGGCCAAAGGGAGCCCTTGGGGACCGTGG
CCGAGAGAGGAGGTGTCGCCAAGATCCCCACTGCAGTGTCCTCTGTCCTGTGCGGCCTGG
CTCTGAGAGCCTTGATCCTAGAGGCAGGACTGCCCCTCTCCTGGACTTGGTTTCCTTGCA
GACACCCCTGGACCAGGGCCTTGGATGAGGGGAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCCTTTCTCCAATTTTGCAAGGTAGAACGCAGTAGAGTAGGTTCCGGAAGCCCAGCAC
AGCTGGAGCAGCAGAGGCCGCAGCTGGAGGCGGGAAGAGGCGAGCGTCTGCCCTGAGGAA
GGGCAGGGTGTTCGCACCCCCCGCGCCCGGCTCACAGCTGGGTTAGCCCATGCTCTGGTC
GGCATTGAGCTTTAACATCTGGGACCCGGCTGGGGCAGCGGAGACCTGCGCGCAGTGGGC
GCGGCCAATGCGCCAGGCTGGAGGGTGAGCGTCGCGCCGGGTCTGGGACAGAGTTGGCAC
CTCCGGATAAGGCCCAGAGCGGCCAAGGGGCCTCCGCGATGCCAGGCGAAAATATCTTCC
TGTTTGTGCCTAACCTTATTGGTTATGCCCGGATTGTCTTCGCCATCATTTCTTTCTACT
TCATGCCCTGCTGCCCCTTCACGGCCTCCTCCTTCTACCTGCTCAGCGGACTTCTGGACG
CTTTTGATGGACACGCTGCTCGAGTCCTTAATCAAGGGACCCGGTTTGGGGCCATGCTGG
ACATGTTGACAGACCGCTGCTCCACCATGTGTCTGCTGGTCAACCTGGCCCTGCTGTACC
CTCGAGCCACCCTTCTCTTCCAGCTCAGCATGAGCTTGGATGTGGCCAGCCACTGGCTGC
ACCTTCACAGTTCTGTGGTCCGAGGCAGTGAAAGTCACAAGATGATTGACCTGTCGGGAA
ATCCAGTGCTTCGCATCTACTACACCTCCAGGCCTGCTCTGTTTACCCTGTGTGCGGGAA
ATGAGCTCTTCTACTGCCTCCTCTACCTGTTCAATTTCTCCGAGGGCCCTTTAGTGGGCT
CTGTGGGCCTTTTCCGGATGGGCCTCTGGGTCACCGCCCCTGTGGCTTTGCTCAAGTCCC
TCATCAGTGTCATCCACCTGATCACGGCCGCCCGCAACATGGCAGCCCTGGACGCAGCAG
ATCGTGCCAAGAAGAAGTGACTTTGGAACCTCCAGCCCCCGGCTGCCCACCTGCCCTGGA
AGTCTCACGGTGCCACGCGGCTTCCCTGTCCCTCCCAGGAGGTCCCAGGCTTCCTAATGT
ATCGTCCAACCTGCTGGGGGAGGGGGGGTGCGGCGGCGGGGGGCGGTCTCGTTGGTGATG
TCGCCGAATCCTAAGGACCCGTCCCACCCCTGTGATCTCCAAGGTCCTGGACCTCAAATC
AGGAAGGATGCTCGGGGGCCCCAAGAGAGTGGTCTGAGGACTGGGCGTTGTCACAGCTGC
TGGCTCAGCTCTGGGGTCTGGCGTGAGTGGGACACTTGAGTGAGGGGGTGGAGGAGGTGT
CCCATAAGGCAGGGATCCAGACCTCTGCCCCTGGCCAAAGGGAGCCCTTGGGGACCGTGG
CCGAGAGAGGAGGTGTCGCCAAGATCCCCACTGCAGTGTCCTCTGTCCTGTGCGGCCTGG
CTCTGAGAGCCTTGATCCTAGAGGCAGGACTGCCCCTCTCCTGGACTTGGTTTCCTTGCA
GACACCCCTGGACCAGGGCCTTGGATGAGGGGAGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               CDIPT_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               CDIPT_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               79-1534, - strand, RNAz p=0.94915

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-1534, - strand, RNAz p=0.94915

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               2-383, gnl|bosTau2|chr25 (24586048-24585660)
               

               
               2-383, gnl|Hg17|chr16 (29782038-29781635)
               

               
               2-383, gnl|Mm7|chr7 (123073002-123073366)
               


               
               515-675, gnl|bosTau2|chr25 (24584722-24584562)
               

               
               515-675, gnl|Hg17|chr16 (29780083-29779923)
               

               
               515-675, gnl|Mm7|chr7 (123074818-123074978)
               


               
               833-1223, gnl|bosTau2|chr25 (24583322-24582926)
               

               
               833-1223, gnl|Hg17|chr16 (29778158-29777797)
               

               
               833-1223, gnl|Mm7|chr7 (123076091-123076472)
               


               
               1315-1534, gnl|bosTau2|chr18 (44802867-44803078)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-383, gnl|bosTau2|chr25 (24586048-24585660)
               

               
               2-383, gnl|Hg17|chr16 (29782038-29781635)
               

               
               2-383, gnl|Mm7|chr7 (123073002-123073366)
               


               
               515-675, gnl|bosTau2|chr25 (24584722-24584562)
               

               
               515-675, gnl|Hg17|chr16 (29780083-29779923)
               

               
               515-675, gnl|Mm7|chr7 (123074818-123074978)
               


               
               833-1223, gnl|bosTau2|chr25 (24583322-24582926)
               

               
               833-1223, gnl|Hg17|chr16 (29778158-29777797)
               

               
               833-1223, gnl|Mm7|chr7 (123076091-123076472)
               


               
               1315-1534, gnl|bosTau2|chr18 (44802867-44803078)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               elu (0.385356)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	2-383, gnl\|bosTau2\|chr25 (24586048-24585660)
	2-383, gnl\|Hg17\|chr16 (29782038-29781635)
	2-383, gnl\|Mm7\|chr7 (123073002-123073366)

	515-675, gnl\|bosTau2\|chr25 (24584722-24584562)
	515-675, gnl\|Hg17\|chr16 (29780083-29779923)
	515-675, gnl\|Mm7\|chr7 (123074818-123074978)

	833-1223, gnl\|bosTau2\|chr25 (24583322-24582926)
	833-1223, gnl\|Hg17\|chr16 (29778158-29777797)
	833-1223, gnl\|Mm7\|chr7 (123076091-123076472)

	1315-1534, gnl\|bosTau2\|chr18 (44802867-44803078)

	elu (0.385356)
	fce (0.271592)
	ece (0.229305)
	cty (0.20816)
	fli (0.202881)
	nep (0.183925)
	fbs (0.175346)
	nco (0.161734)
	hyp (0.142837)
	lnt (0.142308)
	cly (0.120642)
	ecc (0.115035)
	jca (0.11396)
	eje (0.0988338)