Ss1.1-Utr1-UTR010062C09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGATTTGGGCTCCGGGAGGGAGTTCGCCTGAAGGGAGCCTGTGCTGTAGGCCCAGAAGCG GCCCTTCGGGCCCAGCGGCCTCCAGAGGCGGAGAGGAGGAACCCAGGGAAAGGAGCTCGC CGGAGGGGCAGCCCCTGGCCCGGAGCCTCGGGAGCTCGGGGCGGGTCAGCGAGTCCCAGG GGGGTCCACCTTGATAGCCTATGCTTTGCCAAGAGCAGCAGAAAATGAATGAACCCCAGG AGCCAGTGTCATTCAAGGATGTGGCTGTGGATTTCACCCAGGAGGAGTGGCTGCAGTTGG ATGCTGATGAGAAGACCACCTACCGGGACGTGATGCTAGAGAACTACAGCCACCTGGTCT CTGTGGGGTACGACAGCACCAAACCCAACGTGATCATCAGGTTGGAGCAAGGGGAGGAGC CTTGGGTAGCAGACAGTGAACTCCCTCAGCAATGTCATCCAGGTGAGGTAGTGGAGTAGG ACATTTGTGAATGGTCACAGTGGTCCTTTGGAGTGACCTCAGATGCCTTAAGGTATACTT TCTAGTGCCCAGATAGTACTTGCCTCTACCATGTGTACACAAGCTCCCTTCCTGATTTTA CACTGGGCTTTCATTTTAAGACTCCTGTTTTCCACGACGGAGAATGCTTTCTTTCTCTCT TTCTCTCATATTGTCTGTAACTTACCTTCTCCCTATTATTACAGAATTCCTTTGATTTCA GCACTCAAAGTCTGACAAAAAAGTTAACTGGAGATTTTCCTAGTCATTCTTTTTATTGCA TCAAATCTGTAGATTACCTTGGATAGTATGGCCATTATTAAAGCTATTTTAAAATTTAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGATTTGGGCTCCGGGAGGGAGTTCGCCTGAAGGGAGCCTGTGCTGTAGGCCCAGAAGCG GCCCTTCGGGCCCAGCGGCCTCCAGAGGCGGAGAGGAGGAACCCAGGGAAAGGAGCTCGC CGGAGGGGCAGCCCCTGGCCCGGAGCCTCGGGAGCTCGGGGCGGGTCAGCGAGTCCCAGG GGGGTCCACCTTGATAGCCTATGCTTTGCCAAGAGCAGCAGAAAATGAATGAACCCCAGG AGCCAGTGTCATTCAAGGATGTGGCTGTGGATTTCACCCAGGAGGAGTGGCTGCAGTTGG ATGCTGATGAGAAGACCACCTACCGGGACGTGATGCTAGAGAACTACAGCCACCTGGTCT CTGTGGGGTACGACAGCACCAAACCCAACGTGATCATCAGGTTGGAGCAAGGGGAGGAGC CTTGGGTAGCAGACAGTGAACTCCCTCAGCAATGTCATCCAGGTGAGGTAGTGGAGTAGG ACATTTGTGAATGGTCACAGTGGTCCTTTGGAGTGACCTCAGATGCCTTAAGGTATACTT TCTAGTGCCCAGATAGTACTTGCCTCTACCATGTGTACACAAGCTCCCTTCCTGATTTTA CACTGGGCTTTCATTTTAAGACTCCTGTTTTCCACGACGGAGAATGCTTTCTTTCTCTCT TTCTCTCATATTGTCTGTAACTTACCTTCTCCCTATTATTACAGAATTCCTTTGATTTCA GCACTCAAAGTCTGACAAAAAAGTTAACTGGAGATTTTCCTAGTCATTCTTTTTATTGCA TCAAATCTGTAGATTACCTTGGATAGTATGGCCATTATTAAAGCTATTTTAAAATTTAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 262-378, + strand, RNAz p=0.957616 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 262-378, + strand, RNAz p=0.957616 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 13-177, gnl|bosTau2|chr25 (33290675-33290839) | |
| 13-177, gnl|Hg17|chr7 (6519498-6519309) | |
| 237-386, gnl|bosTau2|chr18 (56332267-56332118) | |
| 237-386, gnl|canFam2|chr1 (102893737-102893555) | |
| 237-386, gnl|dasNov1|scaffold_52145 (42523-42359) | |
| 237-386, gnl|echTel1|scaffold_270988 (600-750) | |
| 237-386, gnl|galGal2|chrUn (125457563-125457721) | |
| 237-386, gnl|hg17|chr19 (63264743-63264928) | |
| 237-386, gnl|Hg17|chr19 (63264757-63264910) | |
| 237-386, gnl|loxAfr1|scaffold_120279 (4721-4563) | |
| 237-386, gnl|mm7|chr13 (63161087-63161246) | |
| 237-386, gnl|Mm7|chr17 (20062867-20062733) | |
| 237-386, gnl|monDom2|scaffold_105 (480180-480025) | |
| 237-386, gnl|oryCun1|scaffold_193473 (30094-29921) | |
| 237-386, gnl|panTro1|chr20 (61005245-61005430) | |
| 237-386, gnl|rheMac2|chr19 (63824277-63824462) | |
| 237-386, gnl|rn3|chr1 (73298501-73298670) | |
| 237-386, gnl|xenTro1|scaffold_1044 (89080-89261) | |
| 238-380, gnl|bosTau2|chr14 (25855589-25855732) | |
| 238-380, gnl|Hg17|chr19 (49344762-49344903) | |
| 238-380, gnl|Mm7|chr7 (21082755-21082612) | |
| 247-378, gnl|bosTau2|chr13 (22118997-22119127) | |
| 247-378, gnl|Hg17|chr20 (18234332-18234463) | |
| 247-378, gnl|Mm7|chr13 (47981718-47981587) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 13-177, gnl|bosTau2|chr25 (33290675-33290839) | |
| 13-177, gnl|Hg17|chr7 (6519498-6519309) | |
| 237-386, gnl|bosTau2|chr18 (56332267-56332118) | |
| 237-386, gnl|canFam2|chr1 (102893737-102893555) | |
| 237-386, gnl|dasNov1|scaffold_52145 (42523-42359) | |
| 237-386, gnl|echTel1|scaffold_270988 (600-750) | |
| 237-386, gnl|galGal2|chrUn (125457563-125457721) | |
| 237-386, gnl|hg17|chr19 (63264743-63264928) | |
| 237-386, gnl|Hg17|chr19 (63264757-63264910) | |
| 237-386, gnl|loxAfr1|scaffold_120279 (4721-4563) | |
| 237-386, gnl|mm7|chr13 (63161087-63161246) | |
| 237-386, gnl|Mm7|chr17 (20062867-20062733) | |
| 237-386, gnl|monDom2|scaffold_105 (480180-480025) | |
| 237-386, gnl|oryCun1|scaffold_193473 (30094-29921) | |
| 237-386, gnl|panTro1|chr20 (61005245-61005430) | |
| 237-386, gnl|rheMac2|chr19 (63824277-63824462) | |
| 237-386, gnl|rn3|chr1 (73298501-73298670) | |
| 237-386, gnl|xenTro1|scaffold_1044 (89080-89261) | |
| 238-380, gnl|bosTau2|chr14 (25855589-25855732) | |
| 238-380, gnl|Hg17|chr19 (49344762-49344903) | |
| 238-380, gnl|Mm7|chr7 (21082755-21082612) | |
| 247-378, gnl|bosTau2|chr13 (22118997-22119127) | |
| 247-378, gnl|Hg17|chr20 (18234332-18234463) | |
| 247-378, gnl|Mm7|chr13 (47981718-47981587) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.165235) |