Ss1.1-Utr1-UTR010062E08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCGGCGCCTGGCAGGACTGGACCAACTCTGGCGCAGGGTCCTGGGGGCCTCGTGGGTT GAGACCACCTCGGTTTGGGACATGCTGGCTTGAGCCTGGGGTCCTGGCATGGAATTCCTA ACAGCCTCCCAACCTCCTCCAGGATCTCCAGCCTCCCAACCTCCTCCAGGATCTCCAGCC ATGGAGTTGGAGGAACCCAAGGATACACTTTTGCCCTCTCAGGATCTCTCCTCTGATTGC CAGTGGGACCCAGCGCCAGGAGGCCATAGCAGCCTGAGTCAAATGGAACTTGATGGGCTA AATATTCAGGACCTGGTACAACAGTTTGAAGCTCTGCCAGGTGATCTGGTGGGCCTGTCC CCAGATGGAGCCCCATGTCCCCTGCACATTGCCACTGGCCATGGTCTGGCCTCACAGGAC ATCACCGATGCCCATGGGCTCTTGTCTGCTGAGGCTGGCCGCGATGACTTGCTGAGCCTT TTGCAGCAAGATGAGTGCCCTCCTTCCCAGTTGTGTCCCCAGGAACCTCTGGACCCTGCT CCTCGCCTGTTGCAGCCCCCTGAGGACCCAGAGGAAGATGCTGGCCCTCAGGAGTGGGCT GAGGGAGCCTCTGCTGAGCGGGGTGGCAGTGGGAGTTCAAGCAGCTCCCCGGAACCCTGG CTGGAGACAGTACCTCTGGTTGCTCCTGAAGAGCCACCTGCCAATGTCAAGAGTCCCGAG ACCCTGGCTTCATACCCTGCCCTCCAGGAGGTATCCGGCCCCTGTGATCATGAAGACCTC CTAGATGGTGTCATGTTTGGGGCCAAATACCTGGGCTCCACCCAGCTGGTGTCCGAGCGC AACCCGCCCCCCAGCACACGCATGGCGCAGGCTCAGGAGGCCATGGACCGCGTCAAGGCC CCTGATGGGGAGACTCAGCCCATGACGGAGGTGGACCTCTTCGTCTCCACCAAGAGGGTC AAGGTTCTGATGGCCAACTCTCAGGAGGCCATGATGGACCACGCCCTGCAGACCATCTCC TACATCGCTGACATTGGCAGCGTGCTGGTGCTCATGGCCCGGCGGAGGGTGGCCCGGCGT CCGGCACCCCAGGCCCATAGCCGCCGGCTCTACAAGATGATTTGCCACGTGTTCCACTCA GAGGATGCTCAACTCATCGCTCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCGGCGCCTGGCAGGACTGGACCAACTCTGGCGCAGGGTCCTGGGGGCCTCGTGGGTT GAGACCACCTCGGTTTGGGACATGCTGGCTTGAGCCTGGGGTCCTGGCATGGAATTCCTA ACAGCCTCCCAACCTCCTCCAGGATCTCCAGCCTCCCAACCTCCTCCAGGATCTCCAGCC ATGGAGTTGGAGGAACCCAAGGATACACTTTTGCCCTCTCAGGATCTCTCCTCTGATTGC CAGTGGGACCCAGCGCCAGGAGGCCATAGCAGCCTGAGTCAAATGGAACTTGATGGGCTA AATATTCAGGACCTGGTACAACAGTTTGAAGCTCTGCCAGGTGATCTGGTGGGCCTGTCC CCAGATGGAGCCCCATGTCCCCTGCACATTGCCACTGGCCATGGTCTGGCCTCACAGGAC ATCACCGATGCCCATGGGCTCTTGTCTGCTGAGGCTGGCCGCGATGACTTGCTGAGCCTT TTGCAGCAAGATGAGTGCCCTCCTTCCCAGTTGTGTCCCCAGGAACCTCTGGACCCTGCT CCTCGCCTGTTGCAGCCCCCTGAGGACCCAGAGGAAGATGCTGGCCCTCAGGAGTGGGCT GAGGGAGCCTCTGCTGAGCGGGGTGGCAGTGGGAGTTCAAGCAGCTCCCCGGAACCCTGG CTGGAGACAGTACCTCTGGTTGCTCCTGAAGAGCCACCTGCCAATGTCAAGAGTCCCGAG ACCCTGGCTTCATACCCTGCCCTCCAGGAGGTATCCGGCCCCTGTGATCATGAAGACCTC CTAGATGGTGTCATGTTTGGGGCCAAATACCTGGGCTCCACCCAGCTGGTGTCCGAGCGC AACCCGCCCCCCAGCACACGCATGGCGCAGGCTCAGGAGGCCATGGACCGCGTCAAGGCC CCTGATGGGGAGACTCAGCCCATGACGGAGGTGGACCTCTTCGTCTCCACCAAGAGGGTC AAGGTTCTGATGGCCAACTCTCAGGAGGCCATGATGGACCACGCCCTGCAGACCATCTCC TACATCGCTGACATTGGCAGCGTGCTGGTGCTCATGGCCCGGCGGAGGGTGGCCCGGCGT CCGGCACCCCAGGCCCATAGCCGCCGGCTCTACAAGATGATTTGCCACGTGTTCCACTCA GAGGATGCTCAACTCATCGCTCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 149-267, - strand, RNAz p=0.950212 | |
| 548-667, - strand, RNAz p=0.990636 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 149-267, - strand, RNAz p=0.950212 | |
| 548-667, - strand, RNAz p=0.990636 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 149-711, gnl|bosTau2|chr7 (17638973-17638411) | |
| 149-711, gnl|Hg17|chr19 (3711249-3710687) | |
| 149-711, gnl|Mm7|chr10 (81060905-81061458) | |
| 757-898, gnl|bosTau2|chr21 (858558-858417) | |
| 757-898, gnl|canFam2|chr3 (41261770-41261942) | |
| 757-898, gnl|danRer3|chrUn (80185555-80185728) | |
| 757-898, gnl|dasNov1|scaffold_375 (63614-63783) | |
| 757-898, gnl|echTel1|scaffold_315289 (89647-89479) | |
| 757-898, gnl|fr1|chrUn (129443668-129443499) | |
| 757-898, gnl|galGal2|chr10 (6649816-6649988) | |
| 757-898, gnl|hg17|chr15 (27172546-27172720) | |
| 757-898, gnl|Hg17|chr15 (27172575-27172716) | |
| 757-898, gnl|loxAfr1|scaffold_135265 (619-790) | |
| 757-898, gnl|mm7|chr7 (60591458-60591630) | |
| 757-898, gnl|Mm7|chr7 (60591485-60591626) | |
| 757-898, gnl|monDom2|scaffold_12 (57233701-57233874) | |
| 757-898, gnl|oryCun1|scaffold_214218 (46082-46253) | |
| 757-898, gnl|panTro1|chr16_random (670815-670989) | |
| 757-898, gnl|rheMac2|chr7 (8184338-8184510) | |
| 757-898, gnl|rn3|chr1 (119216211-119216383) | |
| 757-898, gnl|tetNig1|chr13 (12140371-12140521) | |
| 757-898, gnl|xenTro1|scaffold_577 (430371-430527) | |
| 982-1145, gnl|bosTau2|chr7 (17634900-17634737) | |
| 982-1145, gnl|Hg17|chr19 (3704927-3704764) | |
| 982-1145, gnl|Mm7|chr10 (81063360-81063522) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 149-711, gnl|bosTau2|chr7 (17638973-17638411) | |
| 149-711, gnl|Hg17|chr19 (3711249-3710687) | |
| 149-711, gnl|Mm7|chr10 (81060905-81061458) | |
| 757-898, gnl|bosTau2|chr21 (858558-858417) | |
| 757-898, gnl|canFam2|chr3 (41261770-41261942) | |
| 757-898, gnl|danRer3|chrUn (80185555-80185728) | |
| 757-898, gnl|dasNov1|scaffold_375 (63614-63783) | |
| 757-898, gnl|echTel1|scaffold_315289 (89647-89479) | |
| 757-898, gnl|fr1|chrUn (129443668-129443499) | |
| 757-898, gnl|galGal2|chr10 (6649816-6649988) | |
| 757-898, gnl|hg17|chr15 (27172546-27172720) | |
| 757-898, gnl|Hg17|chr15 (27172575-27172716) | |
| 757-898, gnl|loxAfr1|scaffold_135265 (619-790) | |
| 757-898, gnl|mm7|chr7 (60591458-60591630) | |
| 757-898, gnl|Mm7|chr7 (60591485-60591626) | |
| 757-898, gnl|monDom2|scaffold_12 (57233701-57233874) | |
| 757-898, gnl|oryCun1|scaffold_214218 (46082-46253) | |
| 757-898, gnl|panTro1|chr16_random (670815-670989) | |
| 757-898, gnl|rheMac2|chr7 (8184338-8184510) | |
| 757-898, gnl|rn3|chr1 (119216211-119216383) | |
| 757-898, gnl|tetNig1|chr13 (12140371-12140521) | |
| 757-898, gnl|xenTro1|scaffold_577 (430371-430527) | |
| 982-1145, gnl|bosTau2|chr7 (17634900-17634737) | |
| 982-1145, gnl|Hg17|chr19 (3704927-3704764) | |
| 982-1145, gnl|Mm7|chr10 (81063360-81063522) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| jca (0.11396) |