Ss1.1-Utr1-UTR010063A10.5
|
GCGTAGCCCCAGGCTGTGAACAGGAAGTAGAACTTTACTGGGGACACAATCTTCAGGTGA
AAGGGCCAGGGATTCGGAAGAGACATTCACCCCTGGTGTTGGCGTAAGTTCTCAGGGAGT
CTGTACTCGGTACTCAGTCTCCACTTTCGAGTCCCTCTCGCCTGCTGCTGCTCCGGTTCA
CGTATTTTGCCCTGAGCCAGCTTCCACCTCTTAGCACCGAGGCGTTCCCACGGCCATGGC
CGAGTACTCCTACGTGAAGTCCACCAAACTCGTGCTCAAGGGAACCAAGACCAAGAGTAA
GAAGAAAAAGAGCAAAGAGAAGAAGAGAAAAAGAGAAGAAGATGAAGAAACTCAGCTTGA
TATTGTTGGAATCTGGTGGACAGTGACAAACTTTGGTGAAATTTCAGGAACCATAGCAAT
TGAAATGGATAAAGGAACCTACATACATGCACTTGACAATGGACTTTTTACACTGGGAGC
ACCACATAAAGAAGTTGATGAGGGTCCTAGTCCTCCAGAGCAGTTTACAGCTGTCAAATT
GTCTGATTCCAGAATTGCCCTGAAATCCGGCTATGGAAAATACCTTGGTATAAATTCAGA
TGGACTTGTTGTTGGGCGTTCAGATGCAATTGGACCAAGAGAACAATGGGAACCAGTCTT
TCAAGATGGGAAGATGGCTTTACTGGCCTCAAATAGCTGCTTTATTAGATGCAATGAAGC
AGGAGATATAGAAGCAAAAAGTAAAACAGCAGGAGAAGAAGAAATGATAAAGATTAGATC
CTGTGCCGAAAGAGAAACTAAGAAAAAAGATGATATTCCAGAAGAAGACAAAGGAAACGT
TAAACAGTGTGAAATCAATTATGTAAAGAAATTCCAGAGCTTCCAAGACCACAAACTTAA
AGTAAGTAAAGAAGACAGTAAAATTCTTAAAAAGGCCCGGAAAGATGGGTTTTTGCATGA
AACACTTCTGGACAGGAGAGCCAAATTGAAAGCTGATAGATACTGCAAGTGATCAGAATT
TTCGTTTTACTCCTCTTTTTGTTTTTTTCTGAATAAAAAAAAAAAAAAGTGGAAATGTTT |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCGTAGCCCCAGGCTGTGAACAGGAAGTAGAACTTTACTGGGGACACAATCTTCAGGTGA
AAGGGCCAGGGATTCGGAAGAGACATTCACCCCTGGTGTTGGCGTAAGTTCTCAGGGAGT
CTGTACTCGGTACTCAGTCTCCACTTTCGAGTCCCTCTCGCCTGCTGCTGCTCCGGTTCA
CGTATTTTGCCCTGAGCCAGCTTCCACCTCTTAGCACCGAGGCGTTCCCACGGCCATGGC
CGAGTACTCCTACGTGAAGTCCACCAAACTCGTGCTCAAGGGAACCAAGACCAAGAGTAA
GAAGAAAAAGAGCAAAGAGAAGAAGAGAAAAAGAGAAGAAGATGAAGAAACTCAGCTTGA
TATTGTTGGAATCTGGTGGACAGTGACAAACTTTGGTGAAATTTCAGGAACCATAGCAAT
TGAAATGGATAAAGGAACCTACATACATGCACTTGACAATGGACTTTTTACACTGGGAGC
ACCACATAAAGAAGTTGATGAGGGTCCTAGTCCTCCAGAGCAGTTTACAGCTGTCAAATT
GTCTGATTCCAGAATTGCCCTGAAATCCGGCTATGGAAAATACCTTGGTATAAATTCAGA
TGGACTTGTTGTTGGGCGTTCAGATGCAATTGGACCAAGAGAACAATGGGAACCAGTCTT
TCAAGATGGGAAGATGGCTTTACTGGCCTCAAATAGCTGCTTTATTAGATGCAATGAAGC
AGGAGATATAGAAGCAAAAAGTAAAACAGCAGGAGAAGAAGAAATGATAAAGATTAGATC
CTGTGCCGAAAGAGAAACTAAGAAAAAAGATGATATTCCAGAAGAAGACAAAGGAAACGT
TAAACAGTGTGAAATCAATTATGTAAAGAAATTCCAGAGCTTCCAAGACCACAAACTTAA
AGTAAGTAAAGAAGACAGTAAAATTCTTAAAAAGGCCCGGAAAGATGGGTTTTTGCATGA
AACACTTCTGGACAGGAGAGCCAAATTGAAAGCTGATAGATACTGCAAGTGATCAGAATT
TTCGTTTTACTCCTCTTTTTGTTTTTTTCTGAATAAAAAAAAAAAAAAGTGGAAATGTTT |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
450-856, gnl|bosTau2|chr25 (36744093-36744494) |
|
450-856, gnl|Hg17|chr4 (191248547-191257135) |
|
450-856, gnl|Mm7|chr8 (40196694-40185000) |
| |
|
865-987, gnl|bosTau2|chr27 (12215623-12215744) |
|
865-987, gnl|canFam2|chr16 (44324669-44324535) |
|
865-987, gnl|dasNov1|scaffold_22327 (12471-12605) |
|
865-987, gnl|echTel1|scaffold_161638 (2984-2878) |
|
865-987, gnl|fr1|chrUn (18972055-18971929) |
|
865-987, gnl|hg17|chr4 (191258110-191258244) |
|
865-987, gnl|Hg17|chr4 (191258126-191258247) |
|
865-987, gnl|loxAfr1|scaffold_13195 (6772-6636) |
|
865-987, gnl|mm7|chr8 (40184511-40184377) |
|
865-987, gnl|Mm7|chr8 (40184493-40184372) |
|
865-987, gnl|monDom2|scaffold_32 (12705273-12705405) |
|
865-987, gnl|panTro1|chr3 (209529204-209529338) |
|
865-987, gnl|rheMac2|chr5 (182007521-182007655) |
|
865-987, gnl|rn3|chr16 (54258147-54258281) |
|
865-987, gnl|tetNig1|chr18 (7699648-7699529) |
|
865-987, gnl|xenTro1|scaffold_1260 (79347-79211) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
450-856, gnl|bosTau2|chr25 (36744093-36744494) |
|
450-856, gnl|Hg17|chr4 (191248547-191257135) |
|
450-856, gnl|Mm7|chr8 (40196694-40185000) |
| |
|
865-987, gnl|bosTau2|chr27 (12215623-12215744) |
|
865-987, gnl|canFam2|chr16 (44324669-44324535) |
|
865-987, gnl|dasNov1|scaffold_22327 (12471-12605) |
|
865-987, gnl|echTel1|scaffold_161638 (2984-2878) |
|
865-987, gnl|fr1|chrUn (18972055-18971929) |
|
865-987, gnl|hg17|chr4 (191258110-191258244) |
|
865-987, gnl|Hg17|chr4 (191258126-191258247) |
|
865-987, gnl|loxAfr1|scaffold_13195 (6772-6636) |
|
865-987, gnl|mm7|chr8 (40184511-40184377) |
|
865-987, gnl|Mm7|chr8 (40184493-40184372) |
|
865-987, gnl|monDom2|scaffold_32 (12705273-12705405) |
|
865-987, gnl|panTro1|chr3 (209529204-209529338) |
|
865-987, gnl|rheMac2|chr5 (182007521-182007655) |
|
865-987, gnl|rn3|chr16 (54258147-54258281) |
|
865-987, gnl|tetNig1|chr18 (7699648-7699529) |
|
865-987, gnl|xenTro1|scaffold_1260 (79347-79211) |
|
elu (0.770713) |
|
mgp (0.461361) |
|
aor (0.390549) |
|
ova (0.387397) |
|
fty (0.351679) |
|
cut (0.339847) |
|
fco (0.314416) |
|
liv (0.292569) |
|
cst (0.280073) |
|
cbe (0.239234) |
|
tes (0.207814) |
|
nbm (0.198649) |
|
sag (0.182715) |
|
gul (0.177588) |
|
ton (0.1755) |
|
sin (0.174948) |
|
rec (0.17307) |
|
eye (0.170503) |
|
mga (0.160205) |
|
lun (0.150489) |
|
spl (0.143184) |
|
csk (0.140746) |
|
nca (0.136874) |
|
sug (0.127291) |
|
ebs (0.118301) |
|
med (0.116252) |
|
jca (0.11396) |
|
spc (0.113366) |
|
elu (0.770713) |
|
mgp (0.461361) |
|
aor (0.390549) |
|
ova (0.387397) |
|
fty (0.351679) |
|
cut (0.339847) |
|
fco (0.314416) |
|
liv (0.292569) |
|
cst (0.280073) |
|
cbe (0.239234) |
|
tes (0.207814) |
|
nbm (0.198649) |
|
sag (0.182715) |
|
gul (0.177588) |
|
ton (0.1755) |
|
sin (0.174948) |
|
rec (0.17307) |
|
eye (0.170503) |
|
mga (0.160205) |
|
lun (0.150489) |
|
spl (0.143184) |
|
csk (0.140746) |
|
nca (0.136874) |
|
sug (0.127291) |
|
ebs (0.118301) |
|
med (0.116252) |
|
jca (0.11396) |
|
spc (0.113366) |
