Non-Coding RNA Search

Ss1.1-Utr1-UTR010063B08.5

Sequence:


               
               TTACTTTGCGGCAGCGCGGAGAGCCCCACCCCCTTTCTCTGCGGAATCACCATGGCGGCC
GGGACCCTGTACACATATCCTGAAAACTGGAGGGCCTTCAAAGCCCTCATTGCCGCTCAG
TACAGCGGGGCTCAGGTCCGCGTGCTCTCCGCACCACCCCACTTCCATTTTGGCCAAACC
AACCACACCCCCGAATTTCTCCGTAAATTTCCTGCCGGTAAGGTTCCAGCATTTGAGGGT
GACGATGGATTCTGTGTGTTCGAGAGCAATGCCATTGCCTACTACGTGAGCAACGAGGAG
CTGCGGGGAAGTACTCCTGAGGCAGCAGCCCAGGTGGTGCAGTGGGTGAGCTTTGCCGAT
AGCGACATCGTGCCCCCCGCCAGTACCTGGGTGTTCCCCACCTTGGGCATCATGCACTAC
AACAAGCAGGCCACAGAGAATGCAAAGGATGAGGTGAGGCGAGTTCTGGGGCTGCTGGAT
GCTCACTTGAAGACGAGGACTTTTCTGGTGGGCGAACGTGTGACGCTGGCTGACATCACA
GTTGTCTGCACCCTGTTGTGGCTCTACAAACAGGTCCTGGAGCCTTCTTTCCGCCAGGCC
TTCCCCAATACCAACCGCTGGTTCCTCACCTGCATTAACCAGCCCCAGTTCCGGGCTGTC
TTGGGGGAGGTGAAGCTCTGTGAGAAGATGGCCCAGTTTGATGCTAAAAAGTTTGCAGAG
AGTCAGCCTAAAAAGGACACCCCACGGAAAGAGAAAGGTTCTCGAGAAGAGAAGCAGAAG
CCCCAGGCTGAGCGGAAAGAGGAGAAGAAGGCAGCTGCTCCTGCTCCTGAGGAGGAGCTG
GACGAGTGTGAGCAGGCGCTGGCTGCTGAGCCCAAGGCCAAGGATCCCTTTGCTCACCTA
CCCAAGAGTACCTTTGTGTTGGACGAATTTAAGCGCAAGTACTCCAACGAGGACACACTC
TCTGTGGCGCTGCCGTACTTCTGGGAGCACTTTGATAAGGATGGCTGGTCCTTGTGGTAC
TCGGAGTACCGCTTCCCTGAAGAGCTCACCCAGACCTTCATGAGCTGCAACCTCATCACT
GGAATGTTCCAGCGATTGGACAAGCTGAGGAAGAATGCCTTTGCCAGTGTCATTCTCTTT
GGAACCAACAACAGCAGCTCCATTTCTGGAGTCTGGGTCTTCCGAGGCCAGGAGCTTGCC
TTTCCGCTGAGTCCAGATTGGCAGGTGGACTACGAGTCATACACGTGGCGGAAACTGGAT
CCTGGCAGCGAGGAGACCCAGACGCTGGTTCGAGAATACTTTTCCTGGGAGGGGGCCTAC
CAGCATGTGGGCAAAGCCTTCAATCAGGGCAAGATCTTCAAGTGAACATCTCTTGCCATC
GCCTAGCAGCCTGCTTCTGCCCTTCAGGGAGAGTGGGGGTCATTAAAGGAAACTGAACAT
TGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACTTTGCGGCAGCGCGGAGAGCCCCACCCCCTTTCTCTGCGGAATCACCATGGCGGCC
GGGACCCTGTACACATATCCTGAAAACTGGAGGGCCTTCAAAGCCCTCATTGCCGCTCAG
TACAGCGGGGCTCAGGTCCGCGTGCTCTCCGCACCACCCCACTTCCATTTTGGCCAAACC
AACCACACCCCCGAATTTCTCCGTAAATTTCCTGCCGGTAAGGTTCCAGCATTTGAGGGT
GACGATGGATTCTGTGTGTTCGAGAGCAATGCCATTGCCTACTACGTGAGCAACGAGGAG
CTGCGGGGAAGTACTCCTGAGGCAGCAGCCCAGGTGGTGCAGTGGGTGAGCTTTGCCGAT
AGCGACATCGTGCCCCCCGCCAGTACCTGGGTGTTCCCCACCTTGGGCATCATGCACTAC
AACAAGCAGGCCACAGAGAATGCAAAGGATGAGGTGAGGCGAGTTCTGGGGCTGCTGGAT
GCTCACTTGAAGACGAGGACTTTTCTGGTGGGCGAACGTGTGACGCTGGCTGACATCACA
GTTGTCTGCACCCTGTTGTGGCTCTACAAACAGGTCCTGGAGCCTTCTTTCCGCCAGGCC
TTCCCCAATACCAACCGCTGGTTCCTCACCTGCATTAACCAGCCCCAGTTCCGGGCTGTC
TTGGGGGAGGTGAAGCTCTGTGAGAAGATGGCCCAGTTTGATGCTAAAAAGTTTGCAGAG
AGTCAGCCTAAAAAGGACACCCCACGGAAAGAGAAAGGTTCTCGAGAAGAGAAGCAGAAG
CCCCAGGCTGAGCGGAAAGAGGAGAAGAAGGCAGCTGCTCCTGCTCCTGAGGAGGAGCTG
GACGAGTGTGAGCAGGCGCTGGCTGCTGAGCCCAAGGCCAAGGATCCCTTTGCTCACCTA
CCCAAGAGTACCTTTGTGTTGGACGAATTTAAGCGCAAGTACTCCAACGAGGACACACTC
TCTGTGGCGCTGCCGTACTTCTGGGAGCACTTTGATAAGGATGGCTGGTCCTTGTGGTAC
TCGGAGTACCGCTTCCCTGAAGAGCTCACCCAGACCTTCATGAGCTGCAACCTCATCACT
GGAATGTTCCAGCGATTGGACAAGCTGAGGAAGAATGCCTTTGCCAGTGTCATTCTCTTT
GGAACCAACAACAGCAGCTCCATTTCTGGAGTCTGGGTCTTCCGAGGCCAGGAGCTTGCC
TTTCCGCTGAGTCCAGATTGGCAGGTGGACTACGAGTCATACACGTGGCGGAAACTGGAT
CCTGGCAGCGAGGAGACCCAGACGCTGGTTCGAGAATACTTTTCCTGGGAGGGGGCCTAC
CAGCATGTGGGCAAAGCCTTCAATCAGGGCAAGATCTTCAAGTGAACATCTCTTGCCATC
GCCTAGCAGCCTGCTTCTGCCCTTCAGGGAGAGTGGGGGTCATTAAAGGAAACTGAACAT
TGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               EF1G_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               EF1G_PIG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               69-188, - strand, RNAz p=0.700112
               

               
               580-699, - strand, RNAz p=0.836318

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               69-188, - strand, RNAz p=0.700112
               

               
               580-699, - strand, RNAz p=0.836318

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               30-1017, gnl|bosTau2|chr26 (31048131-31049108)
               

               
               30-1017, gnl|Hg17|chr7 (132177955-132176991)
               

               
               30-1017, gnl|Mm7|chr7 (112748406-112747443)
               


               
               1206-1442, gnl|bosTau2|chr29 (32022430-32022194)
               

               
               1206-1442, gnl|Hg17|chr11 (62083886-62083651)
               

               
               1206-1442, gnl|Mm7|chr19 (8658105-8658342)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-1017, gnl|bosTau2|chr26 (31048131-31049108)
               

               
               30-1017, gnl|Hg17|chr7 (132177955-132176991)
               

               
               30-1017, gnl|Mm7|chr7 (112748406-112747443)
               


               
               1206-1442, gnl|bosTau2|chr29 (32022430-32022194)
               

               
               1206-1442, gnl|Hg17|chr11 (62083886-62083651)
               

               
               1206-1442, gnl|Mm7|chr19 (8658105-8658342)

Expressed library(ies): 62 entry(ies)

More info

Expressed library(ies): 62 entry(ies)

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               eep (3.30923)
               

               
               cly (2.8954)
               

               
               elu (2.31214)
               

               
               cag (2.26792)
               

               
               csp (2.25661)
               

               
               cov (2.2466)
               

               
               nlu (2.10849)
               

               
               eje (2.07551)
               

               
               eru (2.04082)
               

               
               lnt (1.85001)
               

               
               pty (1.71257)
               

               
               nms (1.71086)
               

               
               fce (1.62955)
               

               
               cst (1.5404)
               

               
               med (1.51128)
               

               
               fty (1.40672)
               

               
               ill (1.40474)
               

               
               nbm (1.39054)
               

               
               cli (1.37531)
               

               
               nca (1.36874)
               

               
               mcp (1.36519)
               

               
               nco (1.29387)
               

               
               nep (1.28747)
               

               
               ese (1.26502)
               

               
               ton (1.2285)
               

               
               cga (1.11638)
               

               
               che (1.09051)
               

               
               eye (1.02302)
               

               
               fli (1.0144)
               

               
               pgl (0.947867)
               

               
               nmm (0.929615)
               

               
               ecc (0.920281)
               

               
               jca (0.911681)
               

               
               mas (0.84122)
               

               
               clu (0.837521)
               

               
               ebs (0.828108)
               

               
               jej (0.791374)
               

               
               fbs (0.701385)
               

               
               hlv (0.696282)
               

               
               cbl (0.688784)
               

               
               fhi (0.678311)
               

               
               nje (0.66368)
               

               
               hyp (0.571347)
               

               
               cki (0.495704)
               

               
               eli (0.455443)
               

               
               hea (0.408998)
               

               
               ste (0.405625)
               

               
               spl (0.286369)
               

               
               csk (0.281492)
               

               
               ssp (0.271039)
               

               
               ute (0.265569)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               ova (0.129132)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 62 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (3.30923)
               

               
               cly (2.8954)
               

               
               elu (2.31214)
               

               
               cag (2.26792)
               

               
               csp (2.25661)
               

               
               cov (2.2466)
               

               
               nlu (2.10849)
               

               
               eje (2.07551)
               

               
               eru (2.04082)
               

               
               lnt (1.85001)
               

               
               pty (1.71257)
               

               
               nms (1.71086)
               

               
               fce (1.62955)
               

               
               cst (1.5404)
               

               
               med (1.51128)
               

               
               fty (1.40672)
               

               
               ill (1.40474)
               

               
               nbm (1.39054)
               

               
               cli (1.37531)
               

               
               nca (1.36874)
               

               
               mcp (1.36519)
               

               
               nco (1.29387)
               

               
               nep (1.28747)
               

               
               ese (1.26502)
               

               
               ton (1.2285)
               

               
               cga (1.11638)
               

               
               che (1.09051)
               

               
               eye (1.02302)
               

               
               fli (1.0144)
               

               
               pgl (0.947867)
               

               
               nmm (0.929615)
               

               
               ecc (0.920281)
               

               
               jca (0.911681)
               

               
               mas (0.84122)
               

               
               clu (0.837521)
               

               
               ebs (0.828108)
               

               
               jej (0.791374)
               

               
               fbs (0.701385)
               

               
               hlv (0.696282)
               

               
               cbl (0.688784)
               

               
               fhi (0.678311)
               

               
               nje (0.66368)
               

               
               hyp (0.571347)
               

               
               cki (0.495704)
               

               
               eli (0.455443)
               

               
               hea (0.408998)
               

               
               ste (0.405625)
               

               
               spl (0.286369)
               

               
               csk (0.281492)
               

               
               ssp (0.271039)
               

               
               ute (0.265569)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               ova (0.129132)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	69-188, - strand, RNAz p=0.700112
	580-699, - strand, RNAz p=0.836318

	30-1017, gnl\|bosTau2\|chr26 (31048131-31049108)
	30-1017, gnl\|Hg17\|chr7 (132177955-132176991)
	30-1017, gnl\|Mm7\|chr7 (112748406-112747443)

	1206-1442, gnl\|bosTau2\|chr29 (32022430-32022194)
	1206-1442, gnl\|Hg17\|chr11 (62083886-62083651)
	1206-1442, gnl\|Mm7\|chr19 (8658105-8658342)

	eep (3.30923)
	cly (2.8954)
	elu (2.31214)
	cag (2.26792)
	csp (2.25661)
	cov (2.2466)
	nlu (2.10849)
	eje (2.07551)
	eru (2.04082)
	lnt (1.85001)
	pty (1.71257)
	nms (1.71086)
	fce (1.62955)
	cst (1.5404)
	med (1.51128)
	fty (1.40672)
	ill (1.40474)
	nbm (1.39054)
	cli (1.37531)
	nca (1.36874)
	mcp (1.36519)
	nco (1.29387)
	nep (1.28747)
	ese (1.26502)
	ton (1.2285)
	cga (1.11638)
	che (1.09051)
	eye (1.02302)
	fli (1.0144)
	pgl (0.947867)
	nmm (0.929615)
	ecc (0.920281)
	jca (0.911681)
	mas (0.84122)
	clu (0.837521)
	ebs (0.828108)
	jej (0.791374)
	fbs (0.701385)
	hlv (0.696282)
	cbl (0.688784)
	fhi (0.678311)
	nje (0.66368)
	hyp (0.571347)
	cki (0.495704)
	eli (0.455443)
	hea (0.408998)
	ste (0.405625)
	spl (0.286369)
	csk (0.281492)
	ssp (0.271039)
	ute (0.265569)
	ece (0.229305)
	fcc (0.197785)
	col (0.195008)
	duo (0.172801)
	cut (0.169924)
	cje (0.165235)
	lun (0.150489)
	fat (0.147427)
	ova (0.129132)
	cty (0.10408)
	ldo (0.0970026)