Non-Coding RNA Search

Ss1.1-Utr1-UTR010063C08.5

Sequence:


               
               TGTACTTGCCAACAATTAGAAAAGGGAATTGGCAACTCAGGAGAGGCTGGTGCTAGAAAT
AAACCAGGCATTATCACTGCAGCAGCTTGGGGCACTACCATCCCACGGGTTCGATCCTTG
ACCGTTAAGTGAGCGCCTGCTGCGTATATAGCAGTTCTCTGGATGCCGAGAAAAGTTCCG
AGGCACAGCTCCTCTCCTCATAGACACTCTTCGTCCGTCTAGGACCTGCGAGAGAAAAGG
GGGCAAGGCCCACCTGCACCCAGGAAGGGAGGAGGGGCTAATAAGTGAGAAAAGGAAGAA
TATTCAGGCCCGAGCCTGAACCCAGGTCCCAGAGCATCTGGGGGACCTGGGGCGGGGCAG
CGTAGCTCTGGGAACGCACTGGGGCGCTCCATGTTGGGGGCGAAGACCCCAACTGACCCT
CTCTTAGAAGGTGGGGAGGTCGAAAGCGCGTGCTAATTGCCCTTGGCCGCTCAGCTCGAC
CCTTCGAACCGAGAACCGCGAGAGGGGCGTGCAATGCGGAGGACGCTGCCGGTCAGTCAC
CTGTCCCCGCAGCCTCAGAGTTGCCCGCGGCTTCTACGGCTTTGGAGGCGGCGGGCCAGG
CTGGGCGGGCAGCCCTGGCCTGGCTCTGCCCCTGGAGCGGTCCCGGAGACTCGGGCGACG
AAGTGACTACGGCCCCAGTTTGCTCCGGCCTTCGACTCGGGACCCTTCTCGGGCTTGGCC
CCAGGGTCAGGAGGGCAAGGTGAAGGCTTCTGGGCGGACCCAGTTAGTATTCTAATTAAC
CTCGTCCGAGGCACTGTGACTGGGGATCCAAAGCAGGGCAATGCGCCAATAATCTGGGCC
ATGCGGTCACTCCCTCTGCAGCCCTGCCCTGCCCCGTGCCTCCCAATTCTTTAGACAACC
CAAAGGTTCTCCCTCCCCCTCTCTTTTCGGCAAATCTCGTTCCTTCTGGGCTAAGTCCTG
CTGAACTCGTTTCCCTGCAGCTTGGGAGGGGCCGGCTACAGGTTCCTCTCCTCAAGTGTC
TGCCCTGCCCCCTTCTCCCCTCATGTTGCTTTTTCCTTATTCACTCGTTTATCTTCCTCC
AAATCCCCCACTTTGGTTTAGGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTACTTGCCAACAATTAGAAAAGGGAATTGGCAACTCAGGAGAGGCTGGTGCTAGAAAT
AAACCAGGCATTATCACTGCAGCAGCTTGGGGCACTACCATCCCACGGGTTCGATCCTTG
ACCGTTAAGTGAGCGCCTGCTGCGTATATAGCAGTTCTCTGGATGCCGAGAAAAGTTCCG
AGGCACAGCTCCTCTCCTCATAGACACTCTTCGTCCGTCTAGGACCTGCGAGAGAAAAGG
GGGCAAGGCCCACCTGCACCCAGGAAGGGAGGAGGGGCTAATAAGTGAGAAAAGGAAGAA
TATTCAGGCCCGAGCCTGAACCCAGGTCCCAGAGCATCTGGGGGACCTGGGGCGGGGCAG
CGTAGCTCTGGGAACGCACTGGGGCGCTCCATGTTGGGGGCGAAGACCCCAACTGACCCT
CTCTTAGAAGGTGGGGAGGTCGAAAGCGCGTGCTAATTGCCCTTGGCCGCTCAGCTCGAC
CCTTCGAACCGAGAACCGCGAGAGGGGCGTGCAATGCGGAGGACGCTGCCGGTCAGTCAC
CTGTCCCCGCAGCCTCAGAGTTGCCCGCGGCTTCTACGGCTTTGGAGGCGGCGGGCCAGG
CTGGGCGGGCAGCCCTGGCCTGGCTCTGCCCCTGGAGCGGTCCCGGAGACTCGGGCGACG
AAGTGACTACGGCCCCAGTTTGCTCCGGCCTTCGACTCGGGACCCTTCTCGGGCTTGGCC
CCAGGGTCAGGAGGGCAAGGTGAAGGCTTCTGGGCGGACCCAGTTAGTATTCTAATTAAC
CTCGTCCGAGGCACTGTGACTGGGGATCCAAAGCAGGGCAATGCGCCAATAATCTGGGCC
ATGCGGTCACTCCCTCTGCAGCCCTGCCCTGCCCCGTGCCTCCCAATTCTTTAGACAACC
CAAAGGTTCTCCCTCCCCCTCTCTTTTCGGCAAATCTCGTTCCTTCTGGGCTAAGTCCTG
CTGAACTCGTTTCCCTGCAGCTTGGGAGGGGCCGGCTACAGGTTCCTCTCCTCAAGTGTC
TGCCCTGCCCCCTTCTCCCCTCATGTTGCTTTTTCCTTATTCACTCGTTTATCTTCCTCC
AAATCCCCCACTTTGGTTTAGGTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               208-396, - strand, RNAz p=0.996496
               

               
               550-779, + strand, RNAz p=0.939341

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               208-396, - strand, RNAz p=0.996496
               

               
               550-779, + strand, RNAz p=0.939341

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               226-366, - strand, RNAmicro p=0.999992

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               226-366, - strand, RNAmicro p=0.999992

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               208-396, BP153459 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BP153459.1|), blast E-value=0, identity=100%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               208-396, BP153459 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BP153459.1|), blast E-value=0, identity=100%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               130-1057, gnl|bosTau2|chr5 (33674162-33673217)
               

               
               130-1057, gnl|Hg17|chr12 (54607375-54608296)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               130-1057, gnl|bosTau2|chr5 (33674162-33673217)
               

               
               130-1057, gnl|Hg17|chr12 (54607375-54608296)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	208-396, - strand, RNAz p=0.996496
	550-779, + strand, RNAz p=0.939341

	130-1057, gnl\|bosTau2\|chr5 (33674162-33673217)
	130-1057, gnl\|Hg17\|chr12 (54607375-54608296)