Ss1.1-Utr1-UTR010063C09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTGTTTAAGGGGTTCTTTGGGTTTTTTCTTCTTTTCTGTACTTCCAGTCTCATTCCTC AGTATGAAGGCGCTGAGCCCTGTCCGCGGCTGCTACGAGGCGGTGTGCTGCCTATCGGAA CGCAGCCTGGCCATCGCGCGGGGCCGCGGCAAGGGTCCAGCAGCTGAGGAGCCGCTGAGC CTGCTTGATGACATGAACCACTGCTACTCGCGTCTCCGGGAACTGGTACCCGGAGTCCCG CGAGGCACTCAGCTTAGCCAGGTGGAAATCCTGCAGCGCGTCATCGACTACATCCTCGAC CTGCAGGTGGTCCTGGCCGAGCCCGCTCCCGGACCCCCAGACGGCCCGCATCTTCCCATC CAGACAGCCGAGCTCGCTCCGGAACTTGTGATCTCCAATGACCAAACGACCTTCTGCCAC TGACCTGGCGGTCCTGGTGCTTCCAGAACGCAGGTGCTGGCGCTGGTTCCGCCTGGGACC CTGGGACCCTCTACGGCCGGAAGTCCTAGGGCATGGATGGGCCCCAACTTTGTCGTGCCC ACTTGACTTCCCCAAATCCCTGCCTCGAGGCTGGACCTGCGCCCGGGAGCGAAGGACTGT GAACTTGGGTGGCCTAAAAAGCCAGAGCTAGCTCTGGCACCAGCTGGGCGGCCTCCCGCA GCCTCCACCCCACCCCCAAGTTTTAAAGACTGTCTTTCAGTGTGTGGAGGTGTAGGGGGG TGGTGGCTACACTCCAAACTCTGCCAAGGCAGCGGTAGAGCTGGTCTTCTGGTCTCGGAG AAAGGCTCTGTTGCCCTGATTATGAACTCTATAATAGAGTATTTAGCTTTTGTACCTTTT TTGCAGGAAGGTGACTTTCTGTAACCATGCGATGTATATTAAACTTTTTATAAAAGTTAA CATTTTGCATAATAAACGGTTTTTAAACAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTGTTTAAGGGGTTCTTTGGGTTTTTTCTTCTTTTCTGTACTTCCAGTCTCATTCCTC AGTATGAAGGCGCTGAGCCCTGTCCGCGGCTGCTACGAGGCGGTGTGCTGCCTATCGGAA CGCAGCCTGGCCATCGCGCGGGGCCGCGGCAAGGGTCCAGCAGCTGAGGAGCCGCTGAGC CTGCTTGATGACATGAACCACTGCTACTCGCGTCTCCGGGAACTGGTACCCGGAGTCCCG CGAGGCACTCAGCTTAGCCAGGTGGAAATCCTGCAGCGCGTCATCGACTACATCCTCGAC CTGCAGGTGGTCCTGGCCGAGCCCGCTCCCGGACCCCCAGACGGCCCGCATCTTCCCATC CAGACAGCCGAGCTCGCTCCGGAACTTGTGATCTCCAATGACCAAACGACCTTCTGCCAC TGACCTGGCGGTCCTGGTGCTTCCAGAACGCAGGTGCTGGCGCTGGTTCCGCCTGGGACC CTGGGACCCTCTACGGCCGGAAGTCCTAGGGCATGGATGGGCCCCAACTTTGTCGTGCCC ACTTGACTTCCCCAAATCCCTGCCTCGAGGCTGGACCTGCGCCCGGGAGCGAAGGACTGT GAACTTGGGTGGCCTAAAAAGCCAGAGCTAGCTCTGGCACCAGCTGGGCGGCCTCCCGCA GCCTCCACCCCACCCCCAAGTTTTAAAGACTGTCTTTCAGTGTGTGGAGGTGTAGGGGGG TGGTGGCTACACTCCAAACTCTGCCAAGGCAGCGGTAGAGCTGGTCTTCTGGTCTCGGAG AAAGGCTCTGTTGCCCTGATTATGAACTCTATAATAGAGTATTTAGCTTTTGTACCTTTT TTGCAGGAAGGTGACTTTCTGTAACCATGCGATGTATATTAAACTTTTTATAAAAGTTAA CATTTTGCATAATAAACGGTTTTTAAACAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 628-922, + strand, RNAz p=0.99074 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 628-922, + strand, RNAz p=0.99074 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_002167, + |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 2-386, gnl|bosTau2|chr2 (82595134-82595521) | |
| 2-386, gnl|Hg17|chr1 (23631289-23630909) | |
| 2-386, gnl|Mm7|chr4 (135522268-135522634) | |
| 166-316, gnl|bosTau2|chr11 (69160996-69161146) | |
| 166-316, gnl|canFam2|chr10 (58100705-58100561) | |
| 166-316, gnl|danRer3|chr17 (32609456-32609610) | |
| 166-316, gnl|dasNov1|scaffold_79336 (2809-2989) | |
| 166-316, gnl|echTel1|scaffold_287628 (357-190) | |
| 166-316, gnl|fr1|chrUn (76151033-76151216) | |
| 166-316, gnl|galGal2|chr3 (94126455-94126272) | |
| 166-316, gnl|Hg17|chr2 (8772981-8773131) | |
| 166-316, gnl|hg17|chr3 (62085065-62085245) | |
| 166-316, gnl|loxAfr1|scaffold_59215 (6243-6423) | |
| 166-316, gnl|mm7|chr12 (22932255-22932435) | |
| 166-316, gnl|Mm7|chr12 (22932425-22932275) | |
| 166-316, gnl|monDom2|scaffold_1 (126115536-126115356) | |
| 166-316, gnl|panTro1|chr2 (63864794-63864974) | |
| 166-316, gnl|rheMac2|chr13 (8767695-8767515) | |
| 166-316, gnl|rn3|chr6 (42786112-42786292) | |
| 166-316, gnl|tetNig1|chr10 (5993428-5993612) | |
| 166-316, gnl|xenTro1|scaffold_86 (421684-421864) | |
| 443-929, gnl|bosTau2|chr2 (82596249-82596750) | |
| 443-929, gnl|Hg17|chr1 (23630216-23629731) | |
| 443-929, gnl|Mm7|chr4 (135523313-135523824) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-386, gnl|bosTau2|chr2 (82595134-82595521) | |
| 2-386, gnl|Hg17|chr1 (23631289-23630909) | |
| 2-386, gnl|Mm7|chr4 (135522268-135522634) | |
| 166-316, gnl|bosTau2|chr11 (69160996-69161146) | |
| 166-316, gnl|canFam2|chr10 (58100705-58100561) | |
| 166-316, gnl|danRer3|chr17 (32609456-32609610) | |
| 166-316, gnl|dasNov1|scaffold_79336 (2809-2989) | |
| 166-316, gnl|echTel1|scaffold_287628 (357-190) | |
| 166-316, gnl|fr1|chrUn (76151033-76151216) | |
| 166-316, gnl|galGal2|chr3 (94126455-94126272) | |
| 166-316, gnl|Hg17|chr2 (8772981-8773131) | |
| 166-316, gnl|hg17|chr3 (62085065-62085245) | |
| 166-316, gnl|loxAfr1|scaffold_59215 (6243-6423) | |
| 166-316, gnl|mm7|chr12 (22932255-22932435) | |
| 166-316, gnl|Mm7|chr12 (22932425-22932275) | |
| 166-316, gnl|monDom2|scaffold_1 (126115536-126115356) | |
| 166-316, gnl|panTro1|chr2 (63864794-63864974) | |
| 166-316, gnl|rheMac2|chr13 (8767695-8767515) | |
| 166-316, gnl|rn3|chr6 (42786112-42786292) | |
| 166-316, gnl|tetNig1|chr10 (5993428-5993612) | |
| 166-316, gnl|xenTro1|scaffold_86 (421684-421864) | |
| 443-929, gnl|bosTau2|chr2 (82596249-82596750) | |
| 443-929, gnl|Hg17|chr1 (23630216-23629731) | |
| 443-929, gnl|Mm7|chr4 (135523313-135523824) |
| Expressed library(ies): 34 entry(ies) | More info |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
| eep (0.735384) | |
| cly (0.603209) | |
| med (0.58126) | |
| hlv (0.557025) | |
| nca (0.547495) | |
| cut (0.509771) | |
| nco (0.485201) | |
| cli (0.458435) | |
| cag (0.453583) | |
| cov (0.396458) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| ese (0.379507) | |
| fty (0.351679) | |
| jca (0.34188) | |
| eye (0.341006) | |
| fhi (0.339155) | |
| cki (0.330469) | |
| csp (0.322373) | |
| hyp (0.285673) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| pla (0.267344) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| ece (0.229305) | |
| col (0.195008) | |
| nep (0.183925) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| nmm (0.132802) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.735384) | |
| cly (0.603209) | |
| med (0.58126) | |
| hlv (0.557025) | |
| nca (0.547495) | |
| cut (0.509771) | |
| nco (0.485201) | |
| cli (0.458435) | |
| cag (0.453583) | |
| cov (0.396458) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| ese (0.379507) | |
| fty (0.351679) | |
| jca (0.34188) | |
| eye (0.341006) | |
| fhi (0.339155) | |
| cki (0.330469) | |
| csp (0.322373) | |
| hyp (0.285673) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| pla (0.267344) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| ece (0.229305) | |
| col (0.195008) | |
| nep (0.183925) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| nmm (0.132802) | |
| nbm (0.0993246) | |
| eje (0.0988338) |