Ss1.1-Utr1-UTR010063C12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTGAGGCGCTGGGAAAGCAGTAGAGGCATCTGCACGCAAGCAATCCGTCTCTGGCGTGA TGAACTGTTGCGGGCTTTTCCTGCGCTCGGCGGCGGCGGCGCGCTCCTGCCGAGCCCTCG TGGCCTTTGCCGAGAGCCGGCGACTGCTGCGCACCAGTCAGCCCAGCCGAGCTTTCGCCA AGGAGCTCTTCCTGGGCAGAATCGAGAAGAAAGAAGTTTTCCCGTTCCCAGAAGTTAGCC AAGATGAACTTAATGAAATCAATCAGTTTGTGGGACCTGTAGAAAAATTCTTCACTGAAG AGGTGGACTCTCAAAAAATCGACCGTGAGGGAAAAATCCCAAATGAAACCTTAGAGAAAC TGAAGAGCCTGGGGCTTTTTGGGATGCAGGTCCCGGAAGAATACGGTGGCCTGGGCCTCT CCAGCACCATGTATGCGCGGTTGTGCGAGATCATCAGCCTGGACAGCTCCATCGCTGTGA CCCTGGCGGCACACCAGGCCATCGGCCTCAAGGGCATCATCATGACTGGCAGCGAGGAGC AGAAGGCCAAGTACCTGCCCAAACTGGCGTCTGGGGAGCACATGGCCGCCTTCTGCCTGA CGGAACCAGCCAGTGGGAGTGATGCCGCCTCCATCCGGACCAGGGCCACACTGAGCGAAG ATAAGAAACACTATGTCCTCAACGGCTCCAAGGTCTGGATCACCAATGGGGGGCTGGCCA GTGTTTTTACTGTGTTTGCGAAGACCGAGGTTGTTGACTCCGACGGCTCAGTAAAGGACA AGATCACAGCATTCATAGTAGAGAGGGACTTTGGTGGAGTCACCAGCGGGAAACCAGAGG ATAAGCTAGGCATCCGAGGCTCCAACACCTGCGAGGTCCACTTCGAGAACACCCGGGTGC CCGTGGAAAATGTCCTCGGAGAAGTTGGCGGCGGCTTTAAGGTGGCCATGAACATCCTCA ACAGCGGGCGCTTCAGCATGGGCAGCACGGTGGCTGGGATGCTCAAGAAACTCATTGAAA TGACTGCCGAGTACGCCTGCACGAGGAAACAGTTCAACAGGACCCTCAGCGAGTTTGGAT TGATTCAGGAGAAGTTTGCCTTGATGGCTCAGAAGGCTTACGTGATGGAAAGTATGGCTT ACCTCACGGCAGGGATGTTGGACCAGCCTGGGTTTCCTGACTGTTCCATCGAAGCCGCCA TAGTGAAGGTGTTCAGCTCAGAGGGCGCCTGGCAGTGCGTGAGCGAGGCTCTGCAGATCC TTGGGGGCTCAGGCTACATGAAGGACTACCCGTATGAGCGCTTCCTGCGTGACAGCCGTA TCCTCCTCATCTTCGAGGGAACCAACGAGATTCTCCGGATGTACATCGCCCTGACAGGCC TGCAGCACGCCGGGCGCGCCCTGACTGCAAGGGTCAAGGAGCTGAAACGGGGCAATGTGA CCACCGTCATGGAGACCGTTGGCCGGAGGCTTCGGGACTCCCTTGGCCGAACCGTAGACC TGGGGCTGACAGGGAAGCTTGGAGCTGTGCACCCCAGTGTTGCGGACGGTGCCCACAAGC TCGAGGAGAACGTGTACTACTTCGGCCGCACAGTGGAGATGCTGCTGCTTCGCTTTGGCA AGACCATCGTGGAGGAGCAGTTGATCTTGAAGCGAGTGGCCAACGTCCTCATCAACCTGT ATGGCATGACGGCTGTGCTGTCGCGGGCCACCCGCTCCATCCGCATGGGGCTCCGGAACC ATGACCACGAGGTTCTGTTGACCAACATCTTCTGCACGGAAGCCTATCACCAGAATCTCT TCACCCTGTCCCAGCTGGACAAATGTTCTCCAGAAAATCTAGACGAACAGATCAAGAAAG TGTCCCAGCAGGTCCTAGAGAAGCGAGCCTACATCTGTGCCCACCCTCTGGACCGGATGT CCTGAAGTGGAAGGACAGTGTCCCCTGCTGCCACCTGCCCCTGGACACGCTCATACTTTC CAGAAGGCAGAGAACTTGGGTCCTTAAAGGCTGACCATTTCTCCTCCAGCCCCTGACCTG GGGGCACTGCTGCCTGACATCCCACCAGACTCCACGCGGCTTCTGGGAGAGTGAGAACTG CTGAGATTCCCTAACTCAGGGGACACCCTTTGCCACCCCACTCAGGGTGGGACCAGGCTT GTACCACCCCCTCTGTGGCCTGGGCTGGCAGGGACATGCCTCAGGCAGGGTAGCCGCTTC AAGAAGCAGTTCATACATCACCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTGAGGCGCTGGGAAAGCAGTAGAGGCATCTGCACGCAAGCAATCCGTCTCTGGCGTGA TGAACTGTTGCGGGCTTTTCCTGCGCTCGGCGGCGGCGGCGCGCTCCTGCCGAGCCCTCG TGGCCTTTGCCGAGAGCCGGCGACTGCTGCGCACCAGTCAGCCCAGCCGAGCTTTCGCCA AGGAGCTCTTCCTGGGCAGAATCGAGAAGAAAGAAGTTTTCCCGTTCCCAGAAGTTAGCC AAGATGAACTTAATGAAATCAATCAGTTTGTGGGACCTGTAGAAAAATTCTTCACTGAAG AGGTGGACTCTCAAAAAATCGACCGTGAGGGAAAAATCCCAAATGAAACCTTAGAGAAAC TGAAGAGCCTGGGGCTTTTTGGGATGCAGGTCCCGGAAGAATACGGTGGCCTGGGCCTCT CCAGCACCATGTATGCGCGGTTGTGCGAGATCATCAGCCTGGACAGCTCCATCGCTGTGA CCCTGGCGGCACACCAGGCCATCGGCCTCAAGGGCATCATCATGACTGGCAGCGAGGAGC AGAAGGCCAAGTACCTGCCCAAACTGGCGTCTGGGGAGCACATGGCCGCCTTCTGCCTGA CGGAACCAGCCAGTGGGAGTGATGCCGCCTCCATCCGGACCAGGGCCACACTGAGCGAAG ATAAGAAACACTATGTCCTCAACGGCTCCAAGGTCTGGATCACCAATGGGGGGCTGGCCA GTGTTTTTACTGTGTTTGCGAAGACCGAGGTTGTTGACTCCGACGGCTCAGTAAAGGACA AGATCACAGCATTCATAGTAGAGAGGGACTTTGGTGGAGTCACCAGCGGGAAACCAGAGG ATAAGCTAGGCATCCGAGGCTCCAACACCTGCGAGGTCCACTTCGAGAACACCCGGGTGC CCGTGGAAAATGTCCTCGGAGAAGTTGGCGGCGGCTTTAAGGTGGCCATGAACATCCTCA ACAGCGGGCGCTTCAGCATGGGCAGCACGGTGGCTGGGATGCTCAAGAAACTCATTGAAA TGACTGCCGAGTACGCCTGCACGAGGAAACAGTTCAACAGGACCCTCAGCGAGTTTGGAT TGATTCAGGAGAAGTTTGCCTTGATGGCTCAGAAGGCTTACGTGATGGAAAGTATGGCTT ACCTCACGGCAGGGATGTTGGACCAGCCTGGGTTTCCTGACTGTTCCATCGAAGCCGCCA TAGTGAAGGTGTTCAGCTCAGAGGGCGCCTGGCAGTGCGTGAGCGAGGCTCTGCAGATCC TTGGGGGCTCAGGCTACATGAAGGACTACCCGTATGAGCGCTTCCTGCGTGACAGCCGTA TCCTCCTCATCTTCGAGGGAACCAACGAGATTCTCCGGATGTACATCGCCCTGACAGGCC TGCAGCACGCCGGGCGCGCCCTGACTGCAAGGGTCAAGGAGCTGAAACGGGGCAATGTGA CCACCGTCATGGAGACCGTTGGCCGGAGGCTTCGGGACTCCCTTGGCCGAACCGTAGACC TGGGGCTGACAGGGAAGCTTGGAGCTGTGCACCCCAGTGTTGCGGACGGTGCCCACAAGC TCGAGGAGAACGTGTACTACTTCGGCCGCACAGTGGAGATGCTGCTGCTTCGCTTTGGCA AGACCATCGTGGAGGAGCAGTTGATCTTGAAGCGAGTGGCCAACGTCCTCATCAACCTGT ATGGCATGACGGCTGTGCTGTCGCGGGCCACCCGCTCCATCCGCATGGGGCTCCGGAACC ATGACCACGAGGTTCTGTTGACCAACATCTTCTGCACGGAAGCCTATCACCAGAATCTCT TCACCCTGTCCCAGCTGGACAAATGTTCTCCAGAAAATCTAGACGAACAGATCAAGAAAG TGTCCCAGCAGGTCCTAGAGAAGCGAGCCTACATCTGTGCCCACCCTCTGGACCGGATGT CCTGAAGTGGAAGGACAGTGTCCCCTGCTGCCACCTGCCCCTGGACACGCTCATACTTTC CAGAAGGCAGAGAACTTGGGTCCTTAAAGGCTGACCATTTCTCCTCCAGCCCCTGACCTG GGGGCACTGCTGCCTGACATCCCACCAGACTCCACGCGGCTTCTGGGAGAGTGAGAACTG CTGAGATTCCCTAACTCAGGGGACACCCTTTGCCACCCCACTCAGGGTGGGACCAGGCTT GTACCACCCCCTCTGTGGCCTGGGCTGGCAGGGACATGCCTCAGGCAGGGTAGCCGCTTC AAGAAGCAGTTCATACATCACCTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 405-516, gnl|bosTau2|chr22 (48001341-48001230) | |
| 405-516, gnl|canFam2|chr20 (6184080-6183953) | |
| 405-516, gnl|danRer3|chr12 (16745581-16745461) | |
| 405-516, gnl|echTel1|scaffold_55614 (1616-1493) | |
| 405-516, gnl|galGal2|chr12 (5296967-5296853) | |
| 405-516, gnl|hg17|chr3 (130096838-130096963) | |
| 405-516, gnl|Hg17|chr3 (130096850-130096961) | |
| 405-516, gnl|mm7|chr3 (35881570-35881695) | |
| 405-516, gnl|Mm7|chr3 (35881582-35881693) | |
| 405-516, gnl|monDom2|scaffold_5 (48228907-48228783) | |
| 405-516, gnl|panTro1|chr2 (132148394-132148519) | |
| 405-516, gnl|rheMac2|chr11 (85953936-85953811) | |
| 405-516, gnl|rn3|chr2 (122513916-122514041) | |
| 405-516, gnl|tetNig1|chr11 (10769729-10769611) | |
| 405-516, gnl|xenTro1|scaffold_1303 (74539-74419) | |
| 691-867, gnl|bosTau2|chr22 (47998566-47998390) | |
| 691-867, gnl|Hg17|chr3 (130100826-130101002) | |
| 691-867, gnl|Mm7|chr3 (35883953-35884129) | |
| 1207-1338, gnl|bosTau2|chr22 (47992679-47992548) | |
| 1207-1338, gnl|canFam2|chr20 (6164628-6164484) | |
| 1207-1338, gnl|danRer3|chr12 (16742163-16742032) | |
| 1207-1338, gnl|dasNov1|scaffold_85752 (1274-1413) | |
| 1207-1338, gnl|echTel1|scaffold_319890 (87556-87417) | |
| 1207-1338, gnl|fr1|chrUn (271011188-271011045) | |
| 1207-1338, gnl|galGal2|chr12 (5288209-5288072) | |
| 1207-1338, gnl|hg17|chr3 (130107660-130107799) | |
| 1207-1338, gnl|Hg17|chr3 (130107661-130107791) | |
| 1207-1338, gnl|loxAfr1|scaffold_28086 (3918-3778) | |
| 1207-1338, gnl|mm7|chr3 (35892645-35892784) | |
| 1207-1338, gnl|Mm7|chr3 (35892645-35892776) | |
| 1207-1338, gnl|monDom2|scaffold_5 (48211990-48211852) | |
| 1207-1338, gnl|oryCun1|scaffold_162704 (10727-10866) | |
| 1207-1338, gnl|panTro1|chr2 (132159214-132159353) | |
| 1207-1338, gnl|rheMac2|chr11 (85942971-85942832) | |
| 1207-1338, gnl|rn3|chr2 (122525105-122525244) | |
| 1207-1338, gnl|tetNig1|chr11 (10767951-10767807) | |
| 1207-1338, gnl|xenTro1|scaffold_1303 (68091-67954) | |
| 1418-1554, gnl|bosTau2|chr22 (47991330-47991194) | |
| 1418-1554, gnl|canFam2|chr20 (6161788-6161608) | |
| 1418-1554, gnl|dasNov1|scaffold_85752 (3965-4126) | |
| 1418-1554, gnl|echTel1|scaffold_319890 (85033-84860) | |
| 1418-1554, gnl|fr1|chrUn (271010754-271010591) | |
| 1418-1554, gnl|hg17|chr3 (130110466-130110646) | |
| 1418-1554, gnl|Hg17|chr3 (130110514-130110651) | |
| 1418-1554, gnl|loxAfr1|scaffold_28086 (465-285) | |
| 1418-1554, gnl|Mm7|chr3 (35895721-35895858) | |
| 1418-1554, gnl|mm7|chr6 (87749539-87749713) | |
| 1418-1554, gnl|oryCun1|scaffold_172956 (48313-48493) | |
| 1418-1554, gnl|panTro1|chr2 (132162019-132162199) | |
| 1418-1554, gnl|rheMac2|chr11 (85940077-85939897) | |
| 1418-1554, gnl|rn3|chr4 (122096962-122097097) | |
| 1418-1554, gnl|tetNig1|chr11 (10767510-10767362) | |
| 1418-1554, gnl|xenTro1|scaffold_1303 (66763-66589) | |
| 1621-1753, gnl|bosTau2|chr22 (47990518-47990386) | |
| 1621-1753, gnl|Hg17|chr3 (130111560-130111692) | |
| 1621-1753, gnl|Mm7|chr3 (35896563-35896695) | |
| 1826-2128, gnl|bosTau2|chr22 (47989297-47989002) | |
| 1826-2128, gnl|Hg17|chr3 (130114049-130114467) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 405-516, gnl|bosTau2|chr22 (48001341-48001230) | |
| 405-516, gnl|canFam2|chr20 (6184080-6183953) | |
| 405-516, gnl|danRer3|chr12 (16745581-16745461) | |
| 405-516, gnl|echTel1|scaffold_55614 (1616-1493) | |
| 405-516, gnl|galGal2|chr12 (5296967-5296853) | |
| 405-516, gnl|hg17|chr3 (130096838-130096963) | |
| 405-516, gnl|Hg17|chr3 (130096850-130096961) | |
| 405-516, gnl|mm7|chr3 (35881570-35881695) | |
| 405-516, gnl|Mm7|chr3 (35881582-35881693) | |
| 405-516, gnl|monDom2|scaffold_5 (48228907-48228783) | |
| 405-516, gnl|panTro1|chr2 (132148394-132148519) | |
| 405-516, gnl|rheMac2|chr11 (85953936-85953811) | |
| 405-516, gnl|rn3|chr2 (122513916-122514041) | |
| 405-516, gnl|tetNig1|chr11 (10769729-10769611) | |
| 405-516, gnl|xenTro1|scaffold_1303 (74539-74419) | |
| 691-867, gnl|bosTau2|chr22 (47998566-47998390) | |
| 691-867, gnl|Hg17|chr3 (130100826-130101002) | |
| 691-867, gnl|Mm7|chr3 (35883953-35884129) | |
| 1207-1338, gnl|bosTau2|chr22 (47992679-47992548) | |
| 1207-1338, gnl|canFam2|chr20 (6164628-6164484) | |
| 1207-1338, gnl|danRer3|chr12 (16742163-16742032) | |
| 1207-1338, gnl|dasNov1|scaffold_85752 (1274-1413) | |
| 1207-1338, gnl|echTel1|scaffold_319890 (87556-87417) | |
| 1207-1338, gnl|fr1|chrUn (271011188-271011045) | |
| 1207-1338, gnl|galGal2|chr12 (5288209-5288072) | |
| 1207-1338, gnl|hg17|chr3 (130107660-130107799) | |
| 1207-1338, gnl|Hg17|chr3 (130107661-130107791) | |
| 1207-1338, gnl|loxAfr1|scaffold_28086 (3918-3778) | |
| 1207-1338, gnl|mm7|chr3 (35892645-35892784) | |
| 1207-1338, gnl|Mm7|chr3 (35892645-35892776) | |
| 1207-1338, gnl|monDom2|scaffold_5 (48211990-48211852) | |
| 1207-1338, gnl|oryCun1|scaffold_162704 (10727-10866) | |
| 1207-1338, gnl|panTro1|chr2 (132159214-132159353) | |
| 1207-1338, gnl|rheMac2|chr11 (85942971-85942832) | |
| 1207-1338, gnl|rn3|chr2 (122525105-122525244) | |
| 1207-1338, gnl|tetNig1|chr11 (10767951-10767807) | |
| 1207-1338, gnl|xenTro1|scaffold_1303 (68091-67954) | |
| 1418-1554, gnl|bosTau2|chr22 (47991330-47991194) | |
| 1418-1554, gnl|canFam2|chr20 (6161788-6161608) | |
| 1418-1554, gnl|dasNov1|scaffold_85752 (3965-4126) | |
| 1418-1554, gnl|echTel1|scaffold_319890 (85033-84860) | |
| 1418-1554, gnl|fr1|chrUn (271010754-271010591) | |
| 1418-1554, gnl|hg17|chr3 (130110466-130110646) | |
| 1418-1554, gnl|Hg17|chr3 (130110514-130110651) | |
| 1418-1554, gnl|loxAfr1|scaffold_28086 (465-285) | |
| 1418-1554, gnl|Mm7|chr3 (35895721-35895858) | |
| 1418-1554, gnl|mm7|chr6 (87749539-87749713) | |
| 1418-1554, gnl|oryCun1|scaffold_172956 (48313-48493) | |
| 1418-1554, gnl|panTro1|chr2 (132162019-132162199) | |
| 1418-1554, gnl|rheMac2|chr11 (85940077-85939897) | |
| 1418-1554, gnl|rn3|chr4 (122096962-122097097) | |
| 1418-1554, gnl|tetNig1|chr11 (10767510-10767362) | |
| 1418-1554, gnl|xenTro1|scaffold_1303 (66763-66589) | |
| 1621-1753, gnl|bosTau2|chr22 (47990518-47990386) | |
| 1621-1753, gnl|Hg17|chr3 (130111560-130111692) | |
| 1621-1753, gnl|Mm7|chr3 (35896563-35896695) | |
| 1826-2128, gnl|bosTau2|chr22 (47989297-47989002) | |
| 1826-2128, gnl|Hg17|chr3 (130114049-130114467) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cty (0.31224) | |
| mcp (0.170648) | |
| ese (0.126502) | |
| cly (0.120642) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.31224) | |
| mcp (0.170648) | |
| ese (0.126502) | |
| cly (0.120642) |