Ss1.1-Utr1-UTR010063G08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGTTAGACTGCACGGAGGGCTCCAGTCTGTCTTTGTTCCTTGTTTGGGAAGCAAGTGGG AGGGGAGCAGGCCAAGGGGCTATATAACCCTCCAGCGTCCAGCTTCCCGGAACACCACCC AGAGCGGAGAAGCTGAGTCCAGAGCAATCAGGGACCCTGTGAAGCACCAGCCAGGATGTG TGAAGAAGAGGACAGCACTGCCCTGGTGTGTGACAATGGTTCTGGGCTCTGTAAGGCCGG CTTTGCTGGGGACGATGCTCCCAGGGCTGTTTTCCCGTCCATTGTGGGACGTCCTAGACA TCAGGGGGTGATGGTGGGAATGGGACAAAAAGACAGCTACGTGGGTGACGAAGCCCAAAG CAAAAGAGGAATCCTGACCTTGAAGTACCCAATAGAACACGGCATCATCACCAACTGGGA TGACATGGAAAAGATCTGGCACCACTCTTTCTACAATGAGCTTCGTGTTGCCCCAGAAGA GCATCCGACCCTGCTCACCGAGGCACCCCTGAACCCCAAGGCCAACCGGGAGAAGATGAC CCAGATTATGTTTGAAACTTTCAATGTCCCAGCCATGTATGTGGCTATTCAGGCGGTGCT GTCCCTCTACGCCTCTGGACGTACGACTGGCATTGTGCTGGACTCTGGAGATGGTGTCAC CCACAACGTGCCCATTTACGAGGGCTACGCCCTGCCCCACGCCATCATGCGTCTGGACCT GGCGGGCCGAGATCTCACCGACTACCTCATGAAGATCCTGACGGAGCGTGGCTACTCCTT CGTGACCACTGCCGAGCGTGAGATTGTCCGGGACATCAAGGAGAAGCTGTGCTATGTAGC CCTGGACTTTGAAAATGAGATGGCCACTGCCGCGTCCTCCTCCTCCTTGGAGAAGAGCTA TGAGCTGCCTGACGGGCAGGTGATCACCATCGGGAACGAGCGCTTCCGCTGCCCGGAGAC CCTGTTCCAGCCCTCCTTCATCGGGATGGAGTCTGCTGGCATCCATGAGACCACCTACAA CAGCATCATGAAGTGCGACATTGACATCAGGAAGGACCTCTATGCTAACAACGTCCTCTC TGGGGGCACCACCATGTACCCCGGCATTGCCGACCGCATGCAGAAGGAGATCACAGCCCT GGCACCCAGCACCATGAAGATCAAGATCATTGCCCCTCCTGAGCGCAAATACTCCGTCTG GATTGGTGGCTCCATCCTGGCCTCTCTGTCCACCTTCCAGCAAATGTGGATCAGCAAACA GGAGTACGACGAAGCCGGGCCGTCCATTGTCCACCGCAAATGCTTCTAAAACACTTACCC TGCTCGCTGTCTGTCTCTAGCACACACTGTGAATGTTTTGTGGAATAATGCCTTCAATTC TTTTCCAAATCATTCCTAGCCAAAGCTCTGACTCGTTACCTTATGTGTTTTTTAATAAAT CTGAAATATGTTACCTGTAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGTTAGACTGCACGGAGGGCTCCAGTCTGTCTTTGTTCCTTGTTTGGGAAGCAAGTGGG AGGGGAGCAGGCCAAGGGGCTATATAACCCTCCAGCGTCCAGCTTCCCGGAACACCACCC AGAGCGGAGAAGCTGAGTCCAGAGCAATCAGGGACCCTGTGAAGCACCAGCCAGGATGTG TGAAGAAGAGGACAGCACTGCCCTGGTGTGTGACAATGGTTCTGGGCTCTGTAAGGCCGG CTTTGCTGGGGACGATGCTCCCAGGGCTGTTTTCCCGTCCATTGTGGGACGTCCTAGACA TCAGGGGGTGATGGTGGGAATGGGACAAAAAGACAGCTACGTGGGTGACGAAGCCCAAAG CAAAAGAGGAATCCTGACCTTGAAGTACCCAATAGAACACGGCATCATCACCAACTGGGA TGACATGGAAAAGATCTGGCACCACTCTTTCTACAATGAGCTTCGTGTTGCCCCAGAAGA GCATCCGACCCTGCTCACCGAGGCACCCCTGAACCCCAAGGCCAACCGGGAGAAGATGAC CCAGATTATGTTTGAAACTTTCAATGTCCCAGCCATGTATGTGGCTATTCAGGCGGTGCT GTCCCTCTACGCCTCTGGACGTACGACTGGCATTGTGCTGGACTCTGGAGATGGTGTCAC CCACAACGTGCCCATTTACGAGGGCTACGCCCTGCCCCACGCCATCATGCGTCTGGACCT GGCGGGCCGAGATCTCACCGACTACCTCATGAAGATCCTGACGGAGCGTGGCTACTCCTT CGTGACCACTGCCGAGCGTGAGATTGTCCGGGACATCAAGGAGAAGCTGTGCTATGTAGC CCTGGACTTTGAAAATGAGATGGCCACTGCCGCGTCCTCCTCCTCCTTGGAGAAGAGCTA TGAGCTGCCTGACGGGCAGGTGATCACCATCGGGAACGAGCGCTTCCGCTGCCCGGAGAC CCTGTTCCAGCCCTCCTTCATCGGGATGGAGTCTGCTGGCATCCATGAGACCACCTACAA CAGCATCATGAAGTGCGACATTGACATCAGGAAGGACCTCTATGCTAACAACGTCCTCTC TGGGGGCACCACCATGTACCCCGGCATTGCCGACCGCATGCAGAAGGAGATCACAGCCCT GGCACCCAGCACCATGAAGATCAAGATCATTGCCCCTCCTGAGCGCAAATACTCCGTCTG GATTGGTGGCTCCATCCTGGCCTCTCTGTCCACCTTCCAGCAAATGTGGATCAGCAAACA GGAGTACGACGAAGCCGGGCCGTCCATTGTCCACCGCAAATGCTTCTAAAACACTTACCC TGCTCGCTGTCTGTCTCTAGCACACACTGTGAATGTTTTGTGGAATAATGCCTTCAATTC TTTTCCAAATCATTCCTAGCCAAAGCTCTGACTCGTTACCTTATGTGTTTTTTAATAAAT CTGAAATATGTTACCTGTAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 303-462, + strand, RNAz p=0.858641 | |
| 791-899, + strand, RNAz p=0.905456 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 303-462, + strand, RNAz p=0.858641 | |
| 791-899, + strand, RNAz p=0.905456 |
| Aligned organism(s): 72 entry(ies) | More info |
| Aligned organism(s): 72 entry(ies) | Help | Less info |
| 1-153, gnl|bosTau2|chr26 (5425280-5425128) | |
| 1-153, gnl|echTel1|scaffold_180116 (876-1082) | |
| 1-153, gnl|galGal2|chr6 (18399832-18400034) | |
| 1-153, gnl|hg17|chr10 (90702425-90702626) | |
| 1-153, gnl|Hg17|chr10 (90702619-90702467) | |
| 1-153, gnl|loxAfr1|scaffold_5371 (80986-80788) | |
| 1-153, gnl|mm7|chr19 (33956478-33956684) | |
| 1-153, gnl|Mm7|chr19 (33956677-33956521) | |
| 1-153, gnl|monDom2|scaffold_62 (10316745-10316958) | |
| 1-153, gnl|oryCun1|scaffold_201548 (119579-119375) | |
| 1-153, gnl|panTro1|chr8 (92392476-92392677) | |
| 1-153, gnl|rheMac2|chr9 (88532238-88532438) | |
| 1-153, gnl|xenTro1|scaffold_94 (1931715-1931911) | |
| 303-630, gnl|bosTau2|chr10 (19086812-19086485) | |
| 303-630, gnl|canFam2|chr30 (5506751-5507104) | |
| 303-630, gnl|dasNov1|scaffold_19757 (44022-43669) | |
| 303-630, gnl|echTel1|scaffold_318944 (3386-3034) | |
| 303-630, gnl|fr1|chrUn (63305598-63305946) | |
| 303-630, gnl|galGal2|chr5 (29145784-29145442) | |
| 303-630, gnl|hg17|chr15 (32872717-32873069) | |
| 303-630, gnl|Hg17|chr15 (32873064-32872737) | |
| 303-630, gnl|loxAfr1|scaffold_10024 (29037-28725) | |
| 303-630, gnl|mm7|chr2 (113791108-113791460) | |
| 303-630, gnl|Mm7|chr2 (113791455-113791128) | |
| 303-630, gnl|monDom2|scaffold_12 (9572456-9572112) | |
| 303-630, gnl|oryCun1|scaffold_179293 (445-93) | |
| 303-630, gnl|panTro1|chr16 (32653340-32653692) | |
| 303-630, gnl|rheMac2|chr7 (13132136-13132488) | |
| 303-630, gnl|rn3|chr3 (99800397-99800748) | |
| 303-630, gnl|tetNig1|chr10 (7897220-7896871) | |
| 303-630, gnl|xenTro1|scaffold_199 (677786-677445) | |
| 788-991, gnl|bosTau2|chr26 (5412437-5412234) | |
| 788-991, gnl|Hg17|chr10 (90689439-90689236) | |
| 788-991, gnl|Mm7|chr19 (33946340-33946137) | |
| 791-984, gnl|bosTau2|chr10 (19085483-19085290) | |
| 791-984, gnl|canFam2|chr30 (5505628-5505833) | |
| 791-984, gnl|danRer3|chr14 (32886032-32885827) | |
| 791-984, gnl|dasNov1|scaffold_1043 (13637-13827) | |
| 791-984, gnl|echTel1|scaffold_318944 (4473-4268) | |
| 791-984, gnl|fr1|chrUn (63305079-63305280) | |
| 791-984, gnl|galGal2|chr5 (29146862-29146670) | |
| 791-984, gnl|hg17|chr15 (32871574-32871779) | |
| 791-984, gnl|Hg17|chr15 (32871775-32871582) | |
| 791-984, gnl|loxAfr1|scaffold_10024 (29791-29599) | |
| 791-984, gnl|mm7|chr2 (113790000-113790205) | |
| 791-984, gnl|Mm7|chr2 (113790201-113790008) | |
| 791-984, gnl|monDom2|scaffold_12 (9573880-9573675) | |
| 791-984, gnl|oryCun1|scaffold_214311 (43778-43970) | |
| 791-984, gnl|panTro1|chr16 (32652195-32652400) | |
| 791-984, gnl|rheMac2|chr7 (13130989-13131194) | |
| 791-984, gnl|rn3|chr3 (99799298-99799503) | |
| 791-984, gnl|tetNig1|chr10 (7897776-7897575) | |
| 791-984, gnl|xenTro1|scaffold_199 (679801-679596) | |
| 1164-1309, gnl|bosTau2|chr10 (19083781-19083636) | |
| 1164-1309, gnl|canFam2|chr30 (5503985-5504181) | |
| 1164-1309, gnl|danRer3|chr14 (32888947-32888749) | |
| 1164-1309, gnl|dasNov1|scaffold_19757 (46926-46730) | |
| 1164-1309, gnl|echTel1|scaffold_318944 (6298-6097) | |
| 1164-1309, gnl|fr1|chrUn (63304276-63304437) | |
| 1164-1309, gnl|galGal2|chr5 (29148742-29148542) | |
| 1164-1309, gnl|hg17|chr15 (32869867-32870064) | |
| 1164-1309, gnl|Hg17|chr15 (32870050-32869905) | |
| 1164-1309, gnl|loxAfr1|scaffold_10024 (30384-30190) | |
| 1164-1309, gnl|mm7|chr2 (113788269-113788465) | |
| 1164-1309, gnl|Mm7|chr2 (113788451-113788306) | |
| 1164-1309, gnl|monDom2|scaffold_12 (9576524-9576327) | |
| 1164-1309, gnl|oryCun1|scaffold_179293 (3266-3069) | |
| 1164-1309, gnl|panTro1|chr16 (32650491-32650688) | |
| 1164-1309, gnl|rheMac2|chr7 (13129319-13129512) | |
| 1164-1309, gnl|rn3|chr3 (99797588-99797772) | |
| 1164-1309, gnl|tetNig1|chr10 (7898617-7898430) | |
| 1164-1309, gnl|xenTro1|scaffold_199 (681082-680896) |
| Aligned organism(s): 72 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-153, gnl|bosTau2|chr26 (5425280-5425128) | |
| 1-153, gnl|echTel1|scaffold_180116 (876-1082) | |
| 1-153, gnl|galGal2|chr6 (18399832-18400034) | |
| 1-153, gnl|hg17|chr10 (90702425-90702626) | |
| 1-153, gnl|Hg17|chr10 (90702619-90702467) | |
| 1-153, gnl|loxAfr1|scaffold_5371 (80986-80788) | |
| 1-153, gnl|mm7|chr19 (33956478-33956684) | |
| 1-153, gnl|Mm7|chr19 (33956677-33956521) | |
| 1-153, gnl|monDom2|scaffold_62 (10316745-10316958) | |
| 1-153, gnl|oryCun1|scaffold_201548 (119579-119375) | |
| 1-153, gnl|panTro1|chr8 (92392476-92392677) | |
| 1-153, gnl|rheMac2|chr9 (88532238-88532438) | |
| 1-153, gnl|xenTro1|scaffold_94 (1931715-1931911) | |
| 303-630, gnl|bosTau2|chr10 (19086812-19086485) | |
| 303-630, gnl|canFam2|chr30 (5506751-5507104) | |
| 303-630, gnl|dasNov1|scaffold_19757 (44022-43669) | |
| 303-630, gnl|echTel1|scaffold_318944 (3386-3034) | |
| 303-630, gnl|fr1|chrUn (63305598-63305946) | |
| 303-630, gnl|galGal2|chr5 (29145784-29145442) | |
| 303-630, gnl|hg17|chr15 (32872717-32873069) | |
| 303-630, gnl|Hg17|chr15 (32873064-32872737) | |
| 303-630, gnl|loxAfr1|scaffold_10024 (29037-28725) | |
| 303-630, gnl|mm7|chr2 (113791108-113791460) | |
| 303-630, gnl|Mm7|chr2 (113791455-113791128) | |
| 303-630, gnl|monDom2|scaffold_12 (9572456-9572112) | |
| 303-630, gnl|oryCun1|scaffold_179293 (445-93) | |
| 303-630, gnl|panTro1|chr16 (32653340-32653692) | |
| 303-630, gnl|rheMac2|chr7 (13132136-13132488) | |
| 303-630, gnl|rn3|chr3 (99800397-99800748) | |
| 303-630, gnl|tetNig1|chr10 (7897220-7896871) | |
| 303-630, gnl|xenTro1|scaffold_199 (677786-677445) | |
| 788-991, gnl|bosTau2|chr26 (5412437-5412234) | |
| 788-991, gnl|Hg17|chr10 (90689439-90689236) | |
| 788-991, gnl|Mm7|chr19 (33946340-33946137) | |
| 791-984, gnl|bosTau2|chr10 (19085483-19085290) | |
| 791-984, gnl|canFam2|chr30 (5505628-5505833) | |
| 791-984, gnl|danRer3|chr14 (32886032-32885827) | |
| 791-984, gnl|dasNov1|scaffold_1043 (13637-13827) | |
| 791-984, gnl|echTel1|scaffold_318944 (4473-4268) | |
| 791-984, gnl|fr1|chrUn (63305079-63305280) | |
| 791-984, gnl|galGal2|chr5 (29146862-29146670) | |
| 791-984, gnl|hg17|chr15 (32871574-32871779) | |
| 791-984, gnl|Hg17|chr15 (32871775-32871582) | |
| 791-984, gnl|loxAfr1|scaffold_10024 (29791-29599) | |
| 791-984, gnl|mm7|chr2 (113790000-113790205) | |
| 791-984, gnl|Mm7|chr2 (113790201-113790008) | |
| 791-984, gnl|monDom2|scaffold_12 (9573880-9573675) | |
| 791-984, gnl|oryCun1|scaffold_214311 (43778-43970) | |
| 791-984, gnl|panTro1|chr16 (32652195-32652400) | |
| 791-984, gnl|rheMac2|chr7 (13130989-13131194) | |
| 791-984, gnl|rn3|chr3 (99799298-99799503) | |
| 791-984, gnl|tetNig1|chr10 (7897776-7897575) | |
| 791-984, gnl|xenTro1|scaffold_199 (679801-679596) | |
| 1164-1309, gnl|bosTau2|chr10 (19083781-19083636) | |
| 1164-1309, gnl|canFam2|chr30 (5503985-5504181) | |
| 1164-1309, gnl|danRer3|chr14 (32888947-32888749) | |
| 1164-1309, gnl|dasNov1|scaffold_19757 (46926-46730) | |
| 1164-1309, gnl|echTel1|scaffold_318944 (6298-6097) | |
| 1164-1309, gnl|fr1|chrUn (63304276-63304437) | |
| 1164-1309, gnl|galGal2|chr5 (29148742-29148542) | |
| 1164-1309, gnl|hg17|chr15 (32869867-32870064) | |
| 1164-1309, gnl|Hg17|chr15 (32870050-32869905) | |
| 1164-1309, gnl|loxAfr1|scaffold_10024 (30384-30190) | |
| 1164-1309, gnl|mm7|chr2 (113788269-113788465) | |
| 1164-1309, gnl|Mm7|chr2 (113788451-113788306) | |
| 1164-1309, gnl|monDom2|scaffold_12 (9576524-9576327) | |
| 1164-1309, gnl|oryCun1|scaffold_179293 (3266-3069) | |
| 1164-1309, gnl|panTro1|chr16 (32650491-32650688) | |
| 1164-1309, gnl|rheMac2|chr7 (13129319-13129512) | |
| 1164-1309, gnl|rn3|chr3 (99797588-99797772) | |
| 1164-1309, gnl|tetNig1|chr10 (7898617-7898430) | |
| 1164-1309, gnl|xenTro1|scaffold_199 (681082-680896) |
| Expressed library(ies): 54 entry(ies) | More info |
| Expressed library(ies): 54 entry(ies) | Help | Less info |
| gul (8.16906) | |
| bla (3.23303) | |
| eru (2.88115) | |
| cov (2.64306) | |
| cut (2.03908) | |
| aor (1.95274) | |
| nlu (1.91681) | |
| eje (1.87784) | |
| csp (1.45068) | |
| elu (1.15607) | |
| jca (1.1396) | |
| ute (0.929491) | |
| nep (0.919625) | |
| pty (0.856287) | |
| cly (0.844493) | |
| nco (0.808669) | |
| nmm (0.796813) | |
| sag (0.730861) | |
| mcp (0.682594) | |
| cmu (0.55918) | |
| rec (0.519211) | |
| ova (0.516529) | |
| mgp (0.461361) | |
| cag (0.453583) | |
| ski (0.440205) | |
| amn (0.417711) | |
| col (0.390016) | |
| ese (0.379507) | |
| eep (0.367692) | |
| eye (0.341006) | |
| sme (0.305437) | |
| isp (0.300752) | |
| jej (0.296765) | |
| hyp (0.285673) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| ret (0.257467) | |
| sug (0.254582) | |
| cbe (0.239234) | |
| nms (0.213858) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| nje (0.16592) | |
| fat (0.147427) | |
| spl (0.143184) | |
| csk (0.140746) | |
| nca (0.136874) | |
| che (0.136314) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| tra (0.123092) | |
| clu (0.119646) | |
| cty (0.10408) |
| Expressed library(ies): 54 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| gul (8.16906) | |
| bla (3.23303) | |
| eru (2.88115) | |
| cov (2.64306) | |
| cut (2.03908) | |
| aor (1.95274) | |
| nlu (1.91681) | |
| eje (1.87784) | |
| csp (1.45068) | |
| elu (1.15607) | |
| jca (1.1396) | |
| ute (0.929491) | |
| nep (0.919625) | |
| pty (0.856287) | |
| cly (0.844493) | |
| nco (0.808669) | |
| nmm (0.796813) | |
| sag (0.730861) | |
| mcp (0.682594) | |
| cmu (0.55918) | |
| rec (0.519211) | |
| ova (0.516529) | |
| mgp (0.461361) | |
| cag (0.453583) | |
| ski (0.440205) | |
| amn (0.417711) | |
| col (0.390016) | |
| ese (0.379507) | |
| eep (0.367692) | |
| eye (0.341006) | |
| sme (0.305437) | |
| isp (0.300752) | |
| jej (0.296765) | |
| hyp (0.285673) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| ret (0.257467) | |
| sug (0.254582) | |
| cbe (0.239234) | |
| nms (0.213858) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| nje (0.16592) | |
| fat (0.147427) | |
| spl (0.143184) | |
| csk (0.140746) | |
| nca (0.136874) | |
| che (0.136314) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| tra (0.123092) | |
| clu (0.119646) | |
| cty (0.10408) |