Ss1.1-Utr1-UTR010063H07.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTTGTCCGTAGTGGATGTGCCACGTCTACTGGGAGGGAGAGTTATGAACTTGCCAGAGG CTGTTGTCCTAAGCTTTCAACTACATTCTTAACTCTATGAGGTCGGGGGCCCTTTCTCTG TTTTTCTAGGAACTTCTTTCCTGCTCTGGCAACATGAGGCTTTTCTTGTGGAACGCGGTC CTGACGCTGTTAGTCACTTCTTCGAGCGGGGCTCTGATCCCTGAACCAGAAGTGAAGATT GAAGTGCTCCAGAAGCCATTCATCTGCCATCGCAAGACCAAAGGGGGGGATTTGATGCTG GTCCACTATGAAGGCTACTTAGAAAAGGACGGCTCCTTATTTCACTCCACTCACAAACAT AACAATGGTCAGCCTATTTGGTTTGAACCCACCCACTTAGGCCAGCTCAGGTTGGGACCA GGGTTTGAAGGGAATGTGTGTAGGAGAGAAGAGAAAGCTCATCATTCCTCCTGCCTTGGG CTATGGAAAAGAAGGAAAAGGTAAAATTCCCCCGGAGAGTACACTGATATTTAACATCGA TCTCCTGGAGATTCGAAATGGACCAAGATCCCATGAATCATTCCAAGAAATGGATCTTAA TGATGACTGGAAACTCTCTAAAGATGAGGTTAAAGTGTATTTAAAGAAGGAATTTGAAAA GCATGGTGCTGTGGTGAATGAAAGTCATCATGATGTTTTGGTGGAGGATATTTTTGATAA AGAAGATGAAGATAAAGATGGATTTATATCTGCCAGAGAATTTACATATAAACATGATGA GTTATAGAGACACAACTGCCCATTTTATGTAGCATCCATCCTTAAAAGAGAGGGTAACCA TCTTGAAAGAAAGTCTTATTTGTTCATAATCTTCTGTTCATTGTTTTTTATTTTTAATAT TTTTTTCTGAATATTATATGAAGAGTTTCTAAGGACTTCTAAGGACCCATTTCTTTCTGG TGAGTTATTGGGAAGAAAAAAACTGATTTGTCTTGGAACAGAAGACTTCCGGACCATTTT CACTTTCACATATGAAGCCTCATGTTTTACTTGCTGGCTTCTAATTTTAAAATATTGTGG CCCTAAAAAGACAAAAGACAAAAAATAAAATAAAATATTGCAACTGGGAACATGCCCAAC CTAGGACCAAGTTATAGCACAAATCAGCACCCTTTATTTCTTCTTCCCTCTGTTTTCTCC AAGTTAGATGCTAATATTTCACAATTGCCCAAGGCTTATTATTTTCATATTATAATGAAA CTATGTCTGTAACTGCGTTTGAATCTCTGCTTGAGAAAAGAGGAGAATGGCTATTGAACT CTATTTGTTAAGAGTTACTGCTTTACTGAGATGTGCAATGCTGAAGTGAATAAGAGAGTC AATAATTTATAAATATGTATACATTGAAATATTCTGCCTAGGATTTAAGCTACATAGGTT GGGTTCCTAGTGATGAATGACCTGTCATGATTAATGGAACAAATTATTTATGTGTTTATT TCTTCATAATACATGTGTCAAAGTATTGTAGAGGAGGTAGAGAGTTGTACTGAGTCGTTG TTTACTTTTTAAGGCTAGGGGATTACCCTTCCTGGTTCTTAATTAATAAAGTCTGTAACT AATATATTATGCTACAGTAACACTGTTTTATAAGAGAAAGTAGTAAGCGAATTGAATTTT TCCCATTTCTACTTCATCAAAAAAAAAAAAAAAAAAAAAAGAGGCAGACCCACAGCAGCT GCTATTGAATAGAGGTCTATCCTGGGTCAAAAAAATGATTTTATAGTTTTATCTTAAATT GGAATTTTTCCTTAATACTTTTTTAAAAATTGCCCAAATATCCATTTGCTAAGAATAGCC CTTTATAAGTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTTGTCCGTAGTGGATGTGCCACGTCTACTGGGAGGGAGAGTTATGAACTTGCCAGAGG CTGTTGTCCTAAGCTTTCAACTACATTCTTAACTCTATGAGGTCGGGGGCCCTTTCTCTG TTTTTCTAGGAACTTCTTTCCTGCTCTGGCAACATGAGGCTTTTCTTGTGGAACGCGGTC CTGACGCTGTTAGTCACTTCTTCGAGCGGGGCTCTGATCCCTGAACCAGAAGTGAAGATT GAAGTGCTCCAGAAGCCATTCATCTGCCATCGCAAGACCAAAGGGGGGGATTTGATGCTG GTCCACTATGAAGGCTACTTAGAAAAGGACGGCTCCTTATTTCACTCCACTCACAAACAT AACAATGGTCAGCCTATTTGGTTTGAACCCACCCACTTAGGCCAGCTCAGGTTGGGACCA GGGTTTGAAGGGAATGTGTGTAGGAGAGAAGAGAAAGCTCATCATTCCTCCTGCCTTGGG CTATGGAAAAGAAGGAAAAGGTAAAATTCCCCCGGAGAGTACACTGATATTTAACATCGA TCTCCTGGAGATTCGAAATGGACCAAGATCCCATGAATCATTCCAAGAAATGGATCTTAA TGATGACTGGAAACTCTCTAAAGATGAGGTTAAAGTGTATTTAAAGAAGGAATTTGAAAA GCATGGTGCTGTGGTGAATGAAAGTCATCATGATGTTTTGGTGGAGGATATTTTTGATAA AGAAGATGAAGATAAAGATGGATTTATATCTGCCAGAGAATTTACATATAAACATGATGA GTTATAGAGACACAACTGCCCATTTTATGTAGCATCCATCCTTAAAAGAGAGGGTAACCA TCTTGAAAGAAAGTCTTATTTGTTCATAATCTTCTGTTCATTGTTTTTTATTTTTAATAT TTTTTTCTGAATATTATATGAAGAGTTTCTAAGGACTTCTAAGGACCCATTTCTTTCTGG TGAGTTATTGGGAAGAAAAAAACTGATTTGTCTTGGAACAGAAGACTTCCGGACCATTTT CACTTTCACATATGAAGCCTCATGTTTTACTTGCTGGCTTCTAATTTTAAAATATTGTGG CCCTAAAAAGACAAAAGACAAAAAATAAAATAAAATATTGCAACTGGGAACATGCCCAAC CTAGGACCAAGTTATAGCACAAATCAGCACCCTTTATTTCTTCTTCCCTCTGTTTTCTCC AAGTTAGATGCTAATATTTCACAATTGCCCAAGGCTTATTATTTTCATATTATAATGAAA CTATGTCTGTAACTGCGTTTGAATCTCTGCTTGAGAAAAGAGGAGAATGGCTATTGAACT CTATTTGTTAAGAGTTACTGCTTTACTGAGATGTGCAATGCTGAAGTGAATAAGAGAGTC AATAATTTATAAATATGTATACATTGAAATATTCTGCCTAGGATTTAAGCTACATAGGTT GGGTTCCTAGTGATGAATGACCTGTCATGATTAATGGAACAAATTATTTATGTGTTTATT TCTTCATAATACATGTGTCAAAGTATTGTAGAGGAGGTAGAGAGTTGTACTGAGTCGTTG TTTACTTTTTAAGGCTAGGGGATTACCCTTCCTGGTTCTTAATTAATAAAGTCTGTAACT AATATATTATGCTACAGTAACACTGTTTTATAAGAGAAAGTAGTAAGCGAATTGAATTTT TCCCATTTCTACTTCATCAAAAAAAAAAAAAAAAAAAAAAGAGGCAGACCCACAGCAGCT GCTATTGAATAGAGGTCTATCCTGGGTCAAAAAAATGATTTTATAGTTTTATCTTAAATT GGAATTTTTCCTTAATACTTTTTTAAAAATTGCCCAAATATCCATTTGCTAAGAATAGCC CTTTATAAGTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 351-455, + strand, RNAz p=0.650906 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 351-455, + strand, RNAz p=0.650906 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-350, gnl|bosTau2|chr4 (36914527-36914879) | |
| 1-350, gnl|Hg17|chr7 (29839520-29839168) | |
| 1-350, gnl|Mm7|chr6 (54556551-54556217) | |
| 351-504, gnl|bosTau2|chr4 (36917902-36918057) | |
| 351-504, gnl|canFam2|chr14 (45757427-45757585) | |
| 351-504, gnl|danRer3|chr16 (11972496-11972357) | |
| 351-504, gnl|dasNov1|scaffold_12143 (41009-40852) | |
| 351-504, gnl|echTel1|scaffold_283978 (2687-2529) | |
| 351-504, gnl|fr1|chrUn (103546723-103546588) | |
| 351-504, gnl|galGal2|chr2 (33073055-33073215) | |
| 351-504, gnl|hg17|chr7 (29835491-29835651) | |
| 351-504, gnl|Hg17|chr7 (29835672-29835517) | |
| 351-504, gnl|loxAfr1|scaffold_32870 (2947-3105) | |
| 351-504, gnl|mm7|chr6 (54552640-54552773) | |
| 351-504, gnl|Mm7|chr6 (54552794-54552639) | |
| 351-504, gnl|monDom2|scaffold_7 (90373734-90373586) | |
| 351-504, gnl|oryCun1|scaffold_207221 (145959-146117) | |
| 351-504, gnl|panTro1|chr6 (30948971-30949131) | |
| 351-504, gnl|rheMac2|chr3 (96180435-96180277) | |
| 351-504, gnl|rn3|chr4 (83281477-83281612) | |
| 351-504, gnl|tetNig1|chr8 (6527693-6527560) | |
| 351-504, gnl|xenTro1|scaffold_190 (627905-627763) | |
| 590-1077, gnl|bosTau2|chr4 (36924187-36924673) | |
| 590-1077, gnl|Hg17|chr7 (29827787-29827300) | |
| 590-1077, gnl|Mm7|chr6 (54543094-54542631) | |
| 1113-1746, gnl|bosTau2|chr4 (36924666-36925290) | |
| 1113-1746, gnl|Hg17|chr7 (29827307-29826210) | |
| 1113-1746, gnl|Mm7|chr6 (54542637-54542048) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-350, gnl|bosTau2|chr4 (36914527-36914879) | |
| 1-350, gnl|Hg17|chr7 (29839520-29839168) | |
| 1-350, gnl|Mm7|chr6 (54556551-54556217) | |
| 351-504, gnl|bosTau2|chr4 (36917902-36918057) | |
| 351-504, gnl|canFam2|chr14 (45757427-45757585) | |
| 351-504, gnl|danRer3|chr16 (11972496-11972357) | |
| 351-504, gnl|dasNov1|scaffold_12143 (41009-40852) | |
| 351-504, gnl|echTel1|scaffold_283978 (2687-2529) | |
| 351-504, gnl|fr1|chrUn (103546723-103546588) | |
| 351-504, gnl|galGal2|chr2 (33073055-33073215) | |
| 351-504, gnl|hg17|chr7 (29835491-29835651) | |
| 351-504, gnl|Hg17|chr7 (29835672-29835517) | |
| 351-504, gnl|loxAfr1|scaffold_32870 (2947-3105) | |
| 351-504, gnl|mm7|chr6 (54552640-54552773) | |
| 351-504, gnl|Mm7|chr6 (54552794-54552639) | |
| 351-504, gnl|monDom2|scaffold_7 (90373734-90373586) | |
| 351-504, gnl|oryCun1|scaffold_207221 (145959-146117) | |
| 351-504, gnl|panTro1|chr6 (30948971-30949131) | |
| 351-504, gnl|rheMac2|chr3 (96180435-96180277) | |
| 351-504, gnl|rn3|chr4 (83281477-83281612) | |
| 351-504, gnl|tetNig1|chr8 (6527693-6527560) | |
| 351-504, gnl|xenTro1|scaffold_190 (627905-627763) | |
| 590-1077, gnl|bosTau2|chr4 (36924187-36924673) | |
| 590-1077, gnl|Hg17|chr7 (29827787-29827300) | |
| 590-1077, gnl|Mm7|chr6 (54543094-54542631) | |
| 1113-1746, gnl|bosTau2|chr4 (36924666-36925290) | |
| 1113-1746, gnl|Hg17|chr7 (29827307-29826210) | |
| 1113-1746, gnl|Mm7|chr6 (54542637-54542048) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| pro (0.512033) | |
| cki (0.330469) | |
| nlu (0.191681) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| isp (0.150376) | |
| lin (0.145603) | |
| spl (0.143184) | |
| nca (0.136874) | |
| tra (0.123092) | |
| cty (0.10408) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| cki (0.330469) | |
| nlu (0.191681) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| isp (0.150376) | |
| lin (0.145603) | |
| spl (0.143184) | |
| nca (0.136874) | |
| tra (0.123092) | |
| cty (0.10408) |