Ss1.1-Utr1-UTR010064B03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGCGTACCCCGGGCATCCTGGCGCCGGCGGCGGCGGCTACTACCCAGGCGGGTATGGAG GGGCTCCCGGAGGACCTGCGTTTCCCGCACAAACTCAGGATCCGCTCTATGGTTATTTTG CTGCTGTAGCTGGACAGGATGGGCAGATAGATGCTGATGAATTGCAGAGATGCCTGACCC AGTCAGGCATTGCTGGAGGATACAAACCTTTTAACCTGGAGACCTGCCGGCTTATGGTTT CAATGCTGGATAGAGATATGTCCGGCACAATGGGTTTCAATGAATTCAAAGAACTCTGGG CTGTGCTGAATGGCTGGAGGCAGCACTTTATCAGTTTTGACAGCGACAGGAGTGGGACAG TGGATCCTCAAGAACTGCAGAAGGCCCTGACCACAATGGGATTTAGATTGAGTCCCCAGG CCGTGAATTCAATTGCAAAACGATACAGCACCAATGGCAAGATCACCTTTGATGATTACA TCGCCTGCTGTGTCAAGCTGCGTGCTCTTACAGACAGCTTTCGAAGACGGGATACTGCTC AGCAAGGTGTTGTGAATTTCCCATATGATGATTTCATTCAGTGCGTCATGAGTGTTTAAA TCCAGAGGAAGCTGAATGAACATAATCAACATTCCAACTGGAACTCCTCTTTGCTCTTCG CCTTCAGCAGTCGTGTGCAGACTTACACAGCCACTTTTCCTTAACAGTTGTAATGGTTTA TTGCTTTATGTACATCTCAAATTTTTAGTTTTGATAATAAATTCTTTGGAATGCTATTAA GATAAGATCTGTCCTATTTCACCCTTTAGAACTTCCTTGAGCCATTGTTAATCATGCCTT ATTTTCTTGCTAAGCTTCTTTTATGTAAATTTAAGTGCGCAAATTGTCTAAGGCACAGTA TGTATTTTTTCATTGTAAGATACTAAAACCTTTTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGCGTACCCCGGGCATCCTGGCGCCGGCGGCGGCGGCTACTACCCAGGCGGGTATGGAG GGGCTCCCGGAGGACCTGCGTTTCCCGCACAAACTCAGGATCCGCTCTATGGTTATTTTG CTGCTGTAGCTGGACAGGATGGGCAGATAGATGCTGATGAATTGCAGAGATGCCTGACCC AGTCAGGCATTGCTGGAGGATACAAACCTTTTAACCTGGAGACCTGCCGGCTTATGGTTT CAATGCTGGATAGAGATATGTCCGGCACAATGGGTTTCAATGAATTCAAAGAACTCTGGG CTGTGCTGAATGGCTGGAGGCAGCACTTTATCAGTTTTGACAGCGACAGGAGTGGGACAG TGGATCCTCAAGAACTGCAGAAGGCCCTGACCACAATGGGATTTAGATTGAGTCCCCAGG CCGTGAATTCAATTGCAAAACGATACAGCACCAATGGCAAGATCACCTTTGATGATTACA TCGCCTGCTGTGTCAAGCTGCGTGCTCTTACAGACAGCTTTCGAAGACGGGATACTGCTC AGCAAGGTGTTGTGAATTTCCCATATGATGATTTCATTCAGTGCGTCATGAGTGTTTAAA TCCAGAGGAAGCTGAATGAACATAATCAACATTCCAACTGGAACTCCTCTTTGCTCTTCG CCTTCAGCAGTCGTGTGCAGACTTACACAGCCACTTTTCCTTAACAGTTGTAATGGTTTA TTGCTTTATGTACATCTCAAATTTTTAGTTTTGATAATAAATTCTTTGGAATGCTATTAA GATAAGATCTGTCCTATTTCACCCTTTAGAACTTCCTTGAGCCATTGTTAATCATGCCTT ATTTTCTTGCTAAGCTTCTTTTATGTAAATTTAAGTGCGCAAATTGTCTAAGGCACAGTA TGTATTTTTTCATTGTAAGATACTAAAACCTTTTCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 252-400, gnl|bosTau2|chr4 (41276255-41276107) | |
| 252-400, gnl|canFam2|chr14 (17213001-17213118) | |
| 252-400, gnl|danRer3|chr6 (9712269-9712386) | |
| 252-400, gnl|dasNov1|scaffold_98800 (6193-6313) | |
| 252-400, gnl|echTel1|scaffold_312488 (100670-100787) | |
| 252-400, gnl|fr1|chrUn (233193629-233193746) | |
| 252-400, gnl|galGal2|chr2 (20288987-20289102) | |
| 252-400, gnl|hg17|chr7 (87483947-87484064) | |
| 252-400, gnl|Hg17|chr7 (87484096-87483948) | |
| 252-400, gnl|loxAfr1|scaffold_67971 (5206-5101) | |
| 252-400, gnl|mm7|chr5 (8101055-8100938) | |
| 252-400, gnl|Mm7|chr5 (8100904-8101052) | |
| 252-400, gnl|monDom2|scaffold_7 (55970910-55971027) | |
| 252-400, gnl|oryCun1|scaffold_193257 (439-322) | |
| 252-400, gnl|panTro1|chr6 (89001735-89001852) | |
| 252-400, gnl|rheMac2|chr3 (129053168-129053051) | |
| 252-400, gnl|rn3|chr16 (59595800-59595915) | |
| 252-400, gnl|tetNig1|chrUn_random (128551789-128551890) | |
| 252-400, gnl|xenTro1|scaffold_182 (954455-954572) | |
| 573-936, gnl|bosTau2|chr4 (41272807-41272441) | |
| 573-936, gnl|Hg17|chr7 (87480470-87480105) | |
| 573-936, gnl|Mm7|chr5 (8105177-8105541) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 252-400, gnl|bosTau2|chr4 (41276255-41276107) | |
| 252-400, gnl|canFam2|chr14 (17213001-17213118) | |
| 252-400, gnl|danRer3|chr6 (9712269-9712386) | |
| 252-400, gnl|dasNov1|scaffold_98800 (6193-6313) | |
| 252-400, gnl|echTel1|scaffold_312488 (100670-100787) | |
| 252-400, gnl|fr1|chrUn (233193629-233193746) | |
| 252-400, gnl|galGal2|chr2 (20288987-20289102) | |
| 252-400, gnl|hg17|chr7 (87483947-87484064) | |
| 252-400, gnl|Hg17|chr7 (87484096-87483948) | |
| 252-400, gnl|loxAfr1|scaffold_67971 (5206-5101) | |
| 252-400, gnl|mm7|chr5 (8101055-8100938) | |
| 252-400, gnl|Mm7|chr5 (8100904-8101052) | |
| 252-400, gnl|monDom2|scaffold_7 (55970910-55971027) | |
| 252-400, gnl|oryCun1|scaffold_193257 (439-322) | |
| 252-400, gnl|panTro1|chr6 (89001735-89001852) | |
| 252-400, gnl|rheMac2|chr3 (129053168-129053051) | |
| 252-400, gnl|rn3|chr16 (59595800-59595915) | |
| 252-400, gnl|tetNig1|chrUn_random (128551789-128551890) | |
| 252-400, gnl|xenTro1|scaffold_182 (954455-954572) | |
| 573-936, gnl|bosTau2|chr4 (41272807-41272441) | |
| 573-936, gnl|Hg17|chr7 (87480470-87480105) | |
| 573-936, gnl|Mm7|chr5 (8105177-8105541) |
| Expressed library(ies): 59 entry(ies) | More info |
| Expressed library(ies): 59 entry(ies) | Help | Less info |
| lin (3.20326) | |
| spc (1.70049) | |
| rec (1.03842) | |
| pgl (0.947867) | |
| tra (0.738552) | |
| cbe (0.717703) | |
| gul (0.710353) | |
| sin (0.69979) | |
| mgp (0.692042) | |
| ute (0.663922) | |
| ova (0.645661) | |
| sug (0.636456) | |
| bla (0.621736) | |
| sto (0.539471) | |
| cov (0.528611) | |
| ret (0.514933) | |
| pro (0.512033) | |
| thg (0.507164) | |
| cly (0.482567) | |
| mga (0.480615) | |
| ece (0.45861) | |
| pty (0.428143) | |
| csk (0.422238) | |
| amn (0.417711) | |
| cut (0.339847) | |
| csp (0.322373) | |
| cty (0.31224) | |
| jej (0.296765) | |
| cga (0.279096) | |
| fce (0.271592) | |
| lyg (0.266205) | |
| eru (0.240096) | |
| ebs (0.236602) | |
| jca (0.22792) | |
| nbm (0.198649) | |
| aor (0.195274) | |
| col (0.195008) | |
| fty (0.17584) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cje (0.165235) | |
| eli (0.151814) | |
| cag (0.151194) | |
| lun (0.150489) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| che (0.136314) | |
| pla (0.133672) | |
| kid (0.129735) | |
| eep (0.122564) | |
| ecc (0.115035) |
| Expressed library(ies): 59 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (3.20326) | |
| spc (1.70049) | |
| rec (1.03842) | |
| pgl (0.947867) | |
| tra (0.738552) | |
| cbe (0.717703) | |
| gul (0.710353) | |
| sin (0.69979) | |
| mgp (0.692042) | |
| ute (0.663922) | |
| ova (0.645661) | |
| sug (0.636456) | |
| bla (0.621736) | |
| sto (0.539471) | |
| cov (0.528611) | |
| ret (0.514933) | |
| pro (0.512033) | |
| thg (0.507164) | |
| cly (0.482567) | |
| mga (0.480615) | |
| ece (0.45861) | |
| pty (0.428143) | |
| csk (0.422238) | |
| amn (0.417711) | |
| cut (0.339847) | |
| csp (0.322373) | |
| cty (0.31224) | |
| jej (0.296765) | |
| cga (0.279096) | |
| fce (0.271592) | |
| lyg (0.266205) | |
| eru (0.240096) | |
| ebs (0.236602) | |
| jca (0.22792) | |
| nbm (0.198649) | |
| aor (0.195274) | |
| col (0.195008) | |
| fty (0.17584) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cje (0.165235) | |
| eli (0.151814) | |
| cag (0.151194) | |
| lun (0.150489) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| che (0.136314) | |
| pla (0.133672) | |
| kid (0.129735) | |
| eep (0.122564) | |
| ecc (0.115035) |