Non-Coding RNA Search

Ss1.1-Utr1-UTR010064B05.5

Sequence:


               
               GCGTACGCCACAGGAAAGAATTGGAAGTGGCTCCTTTAATTGCTGACGCGGAGAAAGCTA
GGTCCAGGGTTCATTATAACATCCTCTTGTATTCCTATAGCAAACATATCATTTTATGAA
AGTCATGCCTTCAAGCTTTTGCTCTGTTGCTTGGCCGTAGCAGAATATCTGGTGATTGTC
CACCCACTTCCCCTATAGGAATACAAGACGCACACAGGGAAGGAAGATCCCCTAATTGTC
AAGAATTTATCAGCTTAATACACTGTACCTTCTGATTTGCTGAATGCTTTACCATTGGCC
TTTGAGAGCACTATGTACAGGTCACGGGTTCCAGTTAATTCTTGCTTCCCATGGAGCCGT
GGAAAACAGCAAGTTGATCCCAGTTAATTTGCTTTCACATGTACCAGTTTCCTTGTGAGG
GATAAATTCTTGGTTTTTTGTTTTTGTTTTCATCTTATGAAAAAGAAAGCCCTCTCCCCG
CCCCCAGAACTTGCAGTAAATGGGCTTCAGGACCTGTTCTGGTGTGATCTCACACCTATC
AGCAGAGGGCGCTCTGCTCAGATCTTCCTGGTGTGTAACTTAATGCAGAACGTGTATTAG
GTGTAGTGCCCAGCCGATGACCAAGGGCAGTTTCCACGAGTGGGCACCCGGGTGACACTT
CCGGCCCTGCGGCACTGGGCTGAGTAGTAAATGTGCATGATTCTTGTAGGTACTAGAGAC
CAAAGAGGAAAAAAGGGCAGAAACTGGATAAAACTGTGAGGCTCAGGGTGGCCCAGCCAC
AGGCTGTGTCACTTAGGAGTGCTACTGGCCGACCCCACGCTGCACTGCGGGGCTGCCCGG
GGGTCCACGGGGCAGTCCTCCTCTTCCTTGTTCCCCCGCCAGGCCCTGACTGGAGGCACG
TTCTGGGCAGGGAGGAGGGCCAGGATTGGAGTACTCTCTGGGCCGGCTGCCTGCTGCCTG
GTCAGACCACACCTGCCCTTGGTTGTTTAGCATTCATCCCAGAATCAGGGTTTGGCCTTG
AGGGAGAAAGGGAAAGAAAGAAAAAACTTCCCCAAGTGTCGATGTCATTAAACTACATAA
GCCAAGAGAGCAAGACTGGACATGGGCGTAGGAGTCCTCAGGCCTATAGGCTTAAACAAG
CAAGGCTCACCCCAACCACAGGGCTGGCTTCCCTGGGTCTTTGCTTCTCTAGGGCAGTTA
TGGGTTATTTCCCCTTCTCAGCTAAAAAAAAGAAGTTTGGTTTCCTCTGGTGACCTCATT
GTCTAGAACCGGAACCCCATTAATAGGCAATGTGTTAAGCCATCAAGCCAGCCAAGCTTC
TAAGGCTTCTCTTGGGATACCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGTACGCCACAGGAAAGAATTGGAAGTGGCTCCTTTAATTGCTGACGCGGAGAAAGCTA
GGTCCAGGGTTCATTATAACATCCTCTTGTATTCCTATAGCAAACATATCATTTTATGAA
AGTCATGCCTTCAAGCTTTTGCTCTGTTGCTTGGCCGTAGCAGAATATCTGGTGATTGTC
CACCCACTTCCCCTATAGGAATACAAGACGCACACAGGGAAGGAAGATCCCCTAATTGTC
AAGAATTTATCAGCTTAATACACTGTACCTTCTGATTTGCTGAATGCTTTACCATTGGCC
TTTGAGAGCACTATGTACAGGTCACGGGTTCCAGTTAATTCTTGCTTCCCATGGAGCCGT
GGAAAACAGCAAGTTGATCCCAGTTAATTTGCTTTCACATGTACCAGTTTCCTTGTGAGG
GATAAATTCTTGGTTTTTTGTTTTTGTTTTCATCTTATGAAAAAGAAAGCCCTCTCCCCG
CCCCCAGAACTTGCAGTAAATGGGCTTCAGGACCTGTTCTGGTGTGATCTCACACCTATC
AGCAGAGGGCGCTCTGCTCAGATCTTCCTGGTGTGTAACTTAATGCAGAACGTGTATTAG
GTGTAGTGCCCAGCCGATGACCAAGGGCAGTTTCCACGAGTGGGCACCCGGGTGACACTT
CCGGCCCTGCGGCACTGGGCTGAGTAGTAAATGTGCATGATTCTTGTAGGTACTAGAGAC
CAAAGAGGAAAAAAGGGCAGAAACTGGATAAAACTGTGAGGCTCAGGGTGGCCCAGCCAC
AGGCTGTGTCACTTAGGAGTGCTACTGGCCGACCCCACGCTGCACTGCGGGGCTGCCCGG
GGGTCCACGGGGCAGTCCTCCTCTTCCTTGTTCCCCCGCCAGGCCCTGACTGGAGGCACG
TTCTGGGCAGGGAGGAGGGCCAGGATTGGAGTACTCTCTGGGCCGGCTGCCTGCTGCCTG
GTCAGACCACACCTGCCCTTGGTTGTTTAGCATTCATCCCAGAATCAGGGTTTGGCCTTG
AGGGAGAAAGGGAAAGAAAGAAAAAACTTCCCCAAGTGTCGATGTCATTAAACTACATAA
GCCAAGAGAGCAAGACTGGACATGGGCGTAGGAGTCCTCAGGCCTATAGGCTTAAACAAG
CAAGGCTCACCCCAACCACAGGGCTGGCTTCCCTGGGTCTTTGCTTCTCTAGGGCAGTTA
TGGGTTATTTCCCCTTCTCAGCTAAAAAAAAGAAGTTTGGTTTCCTCTGGTGACCTCATT
GTCTAGAACCGGAACCCCATTAATAGGCAATGTGTTAAGCCATCAAGCCAGCCAAGCTTC
TAAGGCTTCTCTTGGGATACCTGT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               86-205, - strand, RNAz p=0.999995
               

               
               254-450, - strand, RNAz p=0.873165
               

               
               325-443, - strand, RNAz p=0.90121

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               86-205, - strand, RNAz p=0.999995
               

               
               254-450, - strand, RNAz p=0.873165
               

               
               325-443, - strand, RNAz p=0.90121

Similar Transcript(s): 5 entry(ies)

More info

Similar Transcript(s): 5 entry(ies)

Help | Less info


               
               86-205, BP170962 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|BP170962.1|), blast E-value=0, identity=100% 
               

               
               86-205, BP170963 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|BP170963.1|), blast E-value=0, identity=100% 
               

               
               112-205, BP463070 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|BP463070.1|), blast E-value=9.80909e-45, identity=100% 
               

               
               139-205, BW965284 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BW965284.1|), blast E-value=1e-28, identity=100% 
               

               
               86-205, CJ037583 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|CJ037583.1|), blast E-value=0, identity=100%

Similar Transcript(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               86-205, BP170962 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|BP170962.1|), blast E-value=0, identity=100% 
               

               
               86-205, BP170963 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|BP170963.1|), blast E-value=0, identity=100% 
               

               
               112-205, BP463070 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|BP463070.1|), blast E-value=9.80909e-45, identity=100% 
               

               
               139-205, BW965284 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BW965284.1|), blast E-value=1e-28, identity=100% 
               

               
               86-205, CJ037583 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|CJ037583.1|), blast E-value=0, identity=100%

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               7-483, gnl|bosTau2|chr9 (52142131-52141685)
               

               
               7-483, gnl|canFam2|chr1 (45410020-45410516)
               

               
               7-483, gnl|hg17|chr6 (152512432-152512913)
               

               
               7-483, gnl|Hg17|chr6 (152512622-152513054)
               

               
               7-483, gnl|mm7|chr10 (5345094-5344674)
               

               
               7-483, gnl|Mm7|chr10 (5344919-5344519)
               

               
               7-483, gnl|monDom2|scaffold_0 (53634404-53633876)
               

               
               7-483, gnl|oryCun1|scaffold_200733 (196283-195817)
               

               
               7-483, gnl|panTro1|chr5 (156030264-156030745)
               

               
               7-483, gnl|rheMac2|chr4 (110983625-110983143)
               

               
               7-483, gnl|rn3|chr1_random (174441-174024)
               


               
               638-1344, gnl|bosTau2|chr9 (52141399-52140689)
               

               
               638-1344, gnl|Hg17|chr6 (152513191-152513946)
               

               
               638-1344, gnl|Mm7|chr10 (5344291-5343647)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-483, gnl|bosTau2|chr9 (52142131-52141685)
               

               
               7-483, gnl|canFam2|chr1 (45410020-45410516)
               

               
               7-483, gnl|hg17|chr6 (152512432-152512913)
               

               
               7-483, gnl|Hg17|chr6 (152512622-152513054)
               

               
               7-483, gnl|mm7|chr10 (5345094-5344674)
               

               
               7-483, gnl|Mm7|chr10 (5344919-5344519)
               

               
               7-483, gnl|monDom2|scaffold_0 (53634404-53633876)
               

               
               7-483, gnl|oryCun1|scaffold_200733 (196283-195817)
               

               
               7-483, gnl|panTro1|chr5 (156030264-156030745)
               

               
               7-483, gnl|rheMac2|chr4 (110983625-110983143)
               

               
               7-483, gnl|rn3|chr1_random (174441-174024)
               


               
               638-1344, gnl|bosTau2|chr9 (52141399-52140689)
               

               
               638-1344, gnl|Hg17|chr6 (152513191-152513946)
               

               
               638-1344, gnl|Mm7|chr10 (5344291-5343647)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	86-205, - strand, RNAz p=0.999995
	254-450, - strand, RNAz p=0.873165
	325-443, - strand, RNAz p=0.90121

	86-205, BP170962 full-length enriched swine cDNA library, adult uterus Sus (dbj\|BP170962.1\|), blast E-value=0, identity=100%
	86-205, BP170963 full-length enriched swine cDNA library, adult uterus Sus (dbj\|BP170963.1\|), blast E-value=0, identity=100%
	112-205, BP463070 full-length enriched swine cDNA library, adult uterus Sus (dbj\|BP463070.1\|), blast E-value=9.80909e-45, identity=100%
	139-205, BW965284 full-length enriched swine cDNA library, adult ovary Sus (dbj\|BW965284.1\|), blast E-value=1e-28, identity=100%
	86-205, CJ037583 full-length enriched swine cDNA library, adult uterus Sus (dbj\|CJ037583.1\|), blast E-value=0, identity=100%

	7-483, gnl\|bosTau2\|chr9 (52142131-52141685)
	7-483, gnl\|canFam2\|chr1 (45410020-45410516)
	7-483, gnl\|hg17\|chr6 (152512432-152512913)
	7-483, gnl\|Hg17\|chr6 (152512622-152513054)
	7-483, gnl\|mm7\|chr10 (5345094-5344674)
	7-483, gnl\|Mm7\|chr10 (5344919-5344519)
	7-483, gnl\|monDom2\|scaffold_0 (53634404-53633876)
	7-483, gnl\|oryCun1\|scaffold_200733 (196283-195817)
	7-483, gnl\|panTro1\|chr5 (156030264-156030745)
	7-483, gnl\|rheMac2\|chr4 (110983625-110983143)
	7-483, gnl\|rn3\|chr1_random (174441-174024)

	638-1344, gnl\|bosTau2\|chr9 (52141399-52140689)
	638-1344, gnl\|Hg17\|chr6 (152513191-152513946)
	638-1344, gnl\|Mm7\|chr10 (5344291-5343647)