Ss1.1-Utr1-UTR010064B06.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GGATCTCAAGCTGGGAAGGTGAGGACGCTAGGAGCTGTGAAGCAAGTTTGAGCTTCACCT TCTTCACGATTGAGCATGGGAGAGAAGTCAGAAAACTGTATGGTTTCAGAGGATATGTTC AATGGTTTGAAAGTTACAGATACCCACGAAGCAGAATGTGTTAGCCCTCCAGTTGCTAAT GCCAAAGATGACCATACCCAGAGCAAGCTGCACAAGGATGTTGAGGCTCGTCCCCAGGAA GACCAGGAAGAAGAGGAGTGCTTTCATGACTCTAGTGCCTCATTTGAGGAGGAGCCAGGA CCCAACAAGGTTGAGAACAAATCTGATGATGATGTGAATTCCTCTGAACTAGATGAAGAA TACCTAATAGAACTGGAAAAAAACATGCCAGATGAGGAGAAAAAGAGAAGGAGAGAAGAG AGCAGTAGACTAAAGGAGGAGGGAAATGAGCAGTTTAAGAAAGGAGATTATATAGAAGCC GAAAGTTCTTATACTCGAGCCCTTCAGATGTGTCCATCCTGCTTCCAGAAAGACAGGTCT ATTCTGTTTTCAAATAGAGCTGCTGCGAGGATGAAACAGGACAAGAAAGAGATGGCCATC AGTGACTGCAGCAAAGCAATTCAGTTAAATCCCAACTATATCAGGGCAATATTGAGGAGA GCAGAGTTGTATGAGAAAACTGACAAGCTAGATGAAGCCCTGGAAGACTATAAATCCATT TTAGAAAAAGACCCATCAGTACATCAAGCAAGAGAAGCTTGTATGAGACTACCTAAGCAA ATTGAAGACCGTAATGAAAGACTAAAGGAAGAGATGTTAGGTAAACTAAAAGATCTTGGG AACTTGGTTCTCCGGCCTTTTGGACTCTCCACAGAAAATTTCCAGATCAAACAGGATTCC TCTACTGGCTCCTACTCCATCAATTTTGTTCAAAATCCAAATAATAACAGATAACAAAGA TAACAATAGCTTTTAAAGCTGGTTTGGAAATTGCGTGCTGCTTGCTGTTAGCAAGGGAAA AGGCCTTGCCCATGTTTAACTTTCAAAAGCATCTTATCTCAAAGACAGGCTATCTACTAG AGCCCAGTGCGCCCTCTCCCCCTTGTTTTATGATCAGGGTGAAATGCACTTCCTGATGCA ATGAGCCTAATTTGATTTCCGTTTTAAGGTAGTGTCTGTGCAGCTCTTGCCCTGGTTCTG GCTGTCCCTCATTGTGTCCAGGAGAAAGCCTGCTTGTCAAGGCTTACCTCCCGAAGTGCC ACAGAGATAAGCCTAGCCAGAGTCATTTGGGCCGAGCAAACCTGCCGGTCGGAGACTAAC CCAGCCAGGATTGATGGCATTCCCACCTGCTGCCCCCAATCCCCCATCACACATGCCACC CAGGCTGCTGTGTGTGGGCTCAAGCGTCCCCTGAGTTCCTCTGTGGTAATAAATGCTTCT |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GGATCTCAAGCTGGGAAGGTGAGGACGCTAGGAGCTGTGAAGCAAGTTTGAGCTTCACCT TCTTCACGATTGAGCATGGGAGAGAAGTCAGAAAACTGTATGGTTTCAGAGGATATGTTC AATGGTTTGAAAGTTACAGATACCCACGAAGCAGAATGTGTTAGCCCTCCAGTTGCTAAT GCCAAAGATGACCATACCCAGAGCAAGCTGCACAAGGATGTTGAGGCTCGTCCCCAGGAA GACCAGGAAGAAGAGGAGTGCTTTCATGACTCTAGTGCCTCATTTGAGGAGGAGCCAGGA CCCAACAAGGTTGAGAACAAATCTGATGATGATGTGAATTCCTCTGAACTAGATGAAGAA TACCTAATAGAACTGGAAAAAAACATGCCAGATGAGGAGAAAAAGAGAAGGAGAGAAGAG AGCAGTAGACTAAAGGAGGAGGGAAATGAGCAGTTTAAGAAAGGAGATTATATAGAAGCC GAAAGTTCTTATACTCGAGCCCTTCAGATGTGTCCATCCTGCTTCCAGAAAGACAGGTCT ATTCTGTTTTCAAATAGAGCTGCTGCGAGGATGAAACAGGACAAGAAAGAGATGGCCATC AGTGACTGCAGCAAAGCAATTCAGTTAAATCCCAACTATATCAGGGCAATATTGAGGAGA GCAGAGTTGTATGAGAAAACTGACAAGCTAGATGAAGCCCTGGAAGACTATAAATCCATT TTAGAAAAAGACCCATCAGTACATCAAGCAAGAGAAGCTTGTATGAGACTACCTAAGCAA ATTGAAGACCGTAATGAAAGACTAAAGGAAGAGATGTTAGGTAAACTAAAAGATCTTGGG AACTTGGTTCTCCGGCCTTTTGGACTCTCCACAGAAAATTTCCAGATCAAACAGGATTCC TCTACTGGCTCCTACTCCATCAATTTTGTTCAAAATCCAAATAATAACAGATAACAAAGA TAACAATAGCTTTTAAAGCTGGTTTGGAAATTGCGTGCTGCTTGCTGTTAGCAAGGGAAA AGGCCTTGCCCATGTTTAACTTTCAAAAGCATCTTATCTCAAAGACAGGCTATCTACTAG AGCCCAGTGCGCCCTCTCCCCCTTGTTTTATGATCAGGGTGAAATGCACTTCCTGATGCA ATGAGCCTAATTTGATTTCCGTTTTAAGGTAGTGTCTGTGCAGCTCTTGCCCTGGTTCTG GCTGTCCCTCATTGTGTCCAGGAGAAAGCCTGCTTGTCAAGGCTTACCTCCCGAAGTGCC ACAGAGATAAGCCTAGCCAGAGTCATTTGGGCCGAGCAAACCTGCCGGTCGGAGACTAAC CCAGCCAGGATTGATGGCATTCCCACCTGCTGCCCCCAATCCCCCATCACACATGCCACC CAGGCTGCTGTGTGTGGGCTCAAGCGTCCCCTGAGTTCCTCTGTGGTAATAAATGCTTCT |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
648-765, + strand, RNAz p=0.866304 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
648-765, + strand, RNAz p=0.866304 |
Aligned organism(s): 38 entry(ies) | More info |
Aligned organism(s): 38 entry(ies) | Help | Less info |
45-405, gnl|bosTau2|chr7 (48651934-48651572) | |
45-405, gnl|Hg17|chr5 (159370083-159370443) | |
45-405, gnl|Mm7|chr11 (43702200-43701838) | |
465-580, gnl|bosTau2|chr7 (48622495-48622380) | |
465-580, gnl|canFam2|chr4 (53828481-53828317) | |
465-580, gnl|echTel1|scaffold_158943 (3185-3020) | |
465-580, gnl|galGal2|chr13 (1613839-1614017) | |
465-580, gnl|hg17|chr5 (159396253-159396422) | |
465-580, gnl|Hg17|chr5 (159396274-159396389) | |
465-580, gnl|mm7|chr11 (43696609-43696441) | |
465-580, gnl|Mm7|chr11 (43696584-43696469) | |
465-580, gnl|monDom2|scaffold_6 (44863929-44863750) | |
465-580, gnl|oryCun1|scaffold_114700 (734-562) | |
465-580, gnl|panTro1|chr4_random (18208020-18208189) | |
465-580, gnl|rheMac2|chr6 (156422306-156422478) | |
465-580, gnl|rn3|chr10 (28851948-28851781) | |
615-765, gnl|bosTau2|chr7 (48614729-48614579) | |
615-765, gnl|canFam2|chr4 (53819639-53819464) | |
615-765, gnl|danRer3|chr21 (19926141-19926312) | |
615-765, gnl|dasNov1|scaffold_1379 (40243-40420) | |
615-765, gnl|echTel1|scaffold_195335 (955-778) | |
615-765, gnl|fr1|chrUn (230393042-230393214) | |
615-765, gnl|galGal2|chr13 (1617878-1618053) | |
615-765, gnl|hg17|chr5 (159409080-159409257) | |
615-765, gnl|Hg17|chr5 (159409097-159409247) | |
615-765, gnl|loxAfr1|scaffold_10430 (7257-7080) | |
615-765, gnl|mm7|chr11 (43694787-43694614) | |
615-765, gnl|Mm7|chr11 (43694770-43694620) | |
615-765, gnl|monDom2|scaffold_6 (44853537-44853356) | |
615-765, gnl|oryCun1|scaffold_209017 (109221-109044) | |
615-765, gnl|panTro1|chr4 (166579511-166579688) | |
615-765, gnl|rheMac2|chr6 (156434968-156435145) | |
615-765, gnl|rn3|chr10 (28845126-28844953) | |
615-765, gnl|tetNig1|chr7 (10082344-10082501) | |
615-765, gnl|xenTro1|scaffold_951 (171708-171878) | |
819-1438, gnl|bosTau2|chr7 (48604930-48604323) | |
819-1438, gnl|Hg17|chr5 (159424515-159425118) | |
819-1438, gnl|Mm7|chr11 (43687362-43686768) |
Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
45-405, gnl|bosTau2|chr7 (48651934-48651572) | |
45-405, gnl|Hg17|chr5 (159370083-159370443) | |
45-405, gnl|Mm7|chr11 (43702200-43701838) | |
465-580, gnl|bosTau2|chr7 (48622495-48622380) | |
465-580, gnl|canFam2|chr4 (53828481-53828317) | |
465-580, gnl|echTel1|scaffold_158943 (3185-3020) | |
465-580, gnl|galGal2|chr13 (1613839-1614017) | |
465-580, gnl|hg17|chr5 (159396253-159396422) | |
465-580, gnl|Hg17|chr5 (159396274-159396389) | |
465-580, gnl|mm7|chr11 (43696609-43696441) | |
465-580, gnl|Mm7|chr11 (43696584-43696469) | |
465-580, gnl|monDom2|scaffold_6 (44863929-44863750) | |
465-580, gnl|oryCun1|scaffold_114700 (734-562) | |
465-580, gnl|panTro1|chr4_random (18208020-18208189) | |
465-580, gnl|rheMac2|chr6 (156422306-156422478) | |
465-580, gnl|rn3|chr10 (28851948-28851781) | |
615-765, gnl|bosTau2|chr7 (48614729-48614579) | |
615-765, gnl|canFam2|chr4 (53819639-53819464) | |
615-765, gnl|danRer3|chr21 (19926141-19926312) | |
615-765, gnl|dasNov1|scaffold_1379 (40243-40420) | |
615-765, gnl|echTel1|scaffold_195335 (955-778) | |
615-765, gnl|fr1|chrUn (230393042-230393214) | |
615-765, gnl|galGal2|chr13 (1617878-1618053) | |
615-765, gnl|hg17|chr5 (159409080-159409257) | |
615-765, gnl|Hg17|chr5 (159409097-159409247) | |
615-765, gnl|loxAfr1|scaffold_10430 (7257-7080) | |
615-765, gnl|mm7|chr11 (43694787-43694614) | |
615-765, gnl|Mm7|chr11 (43694770-43694620) | |
615-765, gnl|monDom2|scaffold_6 (44853537-44853356) | |
615-765, gnl|oryCun1|scaffold_209017 (109221-109044) | |
615-765, gnl|panTro1|chr4 (166579511-166579688) | |
615-765, gnl|rheMac2|chr6 (156434968-156435145) | |
615-765, gnl|rn3|chr10 (28845126-28844953) | |
615-765, gnl|tetNig1|chr7 (10082344-10082501) | |
615-765, gnl|xenTro1|scaffold_951 (171708-171878) | |
819-1438, gnl|bosTau2|chr7 (48604930-48604323) | |
819-1438, gnl|Hg17|chr5 (159424515-159425118) | |
819-1438, gnl|Mm7|chr11 (43687362-43686768) |
Expressed library(ies): 10 entry(ies) | More info |
Expressed library(ies): 10 entry(ies) | Help | Less info |
lnt (0.284616) | |
clu (0.239292) | |
ton (0.1755) | |
mcp (0.170648) | |
hyp (0.142837) | |
ssp (0.13552) | |
ese (0.126502) | |
ebs (0.118301) | |
jca (0.11396) | |
ldo (0.0970026) |
Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
lnt (0.284616) | |
clu (0.239292) | |
ton (0.1755) | |
mcp (0.170648) | |
hyp (0.142837) | |
ssp (0.13552) | |
ese (0.126502) | |
ebs (0.118301) | |
jca (0.11396) | |
ldo (0.0970026) |