Ss1.1-Utr1-UTR010064D11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGCTGAGCAGCGTGGGGAGCGTGACACCCAGACTCAGGCCATCCTCACCAAGCTCAAGT GTGCCGCAGGCCTGGCCGAGCTGGCGGCACGCAAGTACAAGCAGGCTGCCAAGTGCTTCC TCCTGGCCGCCTTCGATCACTGCGACTTCCCCGAGCTGCTCTCCCCCAGCAACGTGGCCG TCTACGGCGGCCTGTGCGCCTTGGCCACCTTTGACCGGCAGGAGCTGCAGCGCAACGTCA TCTCCAGCAGCTCCTTCAAGCTGTTCCTGGAGCTGGAGCCGCAGGTTCGGGACATCATCT TTAAATTCTACGAGTCCAAGTACGCCTCGTGCCTCAAGATGCTGGACGAGATGAAGGACA ACCTGCTCCTGGACATGTACCTGGCTCCGCACGTCAGGACGCTGTACACGCAGATCCGCA ACCGGGCCCTCATCCAGTACTTCAGCCCCTACGTGTCGGCCGACATGCGCAAGATGGCCA CGGCCTTCAACACCACGGTGGCGGCGCTGGAGGACGAGCTGACGCAGCTCATCCTGGAAG GGCTCATCAACGCCCGCATCGACTCCCACAGCAAGATCCTGTACGCCCGGGACGTGGACC AGCGCAGCACCACCTTCGAGAAGTCCCTGCTGATGGGCAAGGAGTTCCAGCGCCGCGTCA AAGCCATGATCCTGCGGGCGGCCGTGCTGCGCAACCAGATCCACGTCAAGTCCCCTCCCC GAGAAGGGAGCCAGGGGGAGCTGACGCCGGCCAACAGCCAGTCCCGGATGAGCACCAACA TGTGAGGGCTCCCTTCGGCCTCCGGGACGGTCTGCGCCCCCCACCCCCACCCCCGGACGC CCGGGCCTCCCTCCTGCTGCTGCAGTGCCTGTGGAGGTGGTGCCTGGAGCCCACGTGCCG GATGATGCCAGCCCTCGGCCCCCACCCCTCTCCCCCGGCCCTGTTCACCCTGTGCTGGGG GCCCCGGGGAGGAGGTGGGTTTAACGGGAGGGCCGGGCCCCCACCCGGCAGCCCCACCTC CCAGCCTCCATGGGGACGTGTCGTTTGGGGTCGCAGCCTTGTTGAATCTGAGTTCATTAA AGGGCAGCCTGAGAAGCGAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGCTGAGCAGCGTGGGGAGCGTGACACCCAGACTCAGGCCATCCTCACCAAGCTCAAGT GTGCCGCAGGCCTGGCCGAGCTGGCGGCACGCAAGTACAAGCAGGCTGCCAAGTGCTTCC TCCTGGCCGCCTTCGATCACTGCGACTTCCCCGAGCTGCTCTCCCCCAGCAACGTGGCCG TCTACGGCGGCCTGTGCGCCTTGGCCACCTTTGACCGGCAGGAGCTGCAGCGCAACGTCA TCTCCAGCAGCTCCTTCAAGCTGTTCCTGGAGCTGGAGCCGCAGGTTCGGGACATCATCT TTAAATTCTACGAGTCCAAGTACGCCTCGTGCCTCAAGATGCTGGACGAGATGAAGGACA ACCTGCTCCTGGACATGTACCTGGCTCCGCACGTCAGGACGCTGTACACGCAGATCCGCA ACCGGGCCCTCATCCAGTACTTCAGCCCCTACGTGTCGGCCGACATGCGCAAGATGGCCA CGGCCTTCAACACCACGGTGGCGGCGCTGGAGGACGAGCTGACGCAGCTCATCCTGGAAG GGCTCATCAACGCCCGCATCGACTCCCACAGCAAGATCCTGTACGCCCGGGACGTGGACC AGCGCAGCACCACCTTCGAGAAGTCCCTGCTGATGGGCAAGGAGTTCCAGCGCCGCGTCA AAGCCATGATCCTGCGGGCGGCCGTGCTGCGCAACCAGATCCACGTCAAGTCCCCTCCCC GAGAAGGGAGCCAGGGGGAGCTGACGCCGGCCAACAGCCAGTCCCGGATGAGCACCAACA TGTGAGGGCTCCCTTCGGCCTCCGGGACGGTCTGCGCCCCCCACCCCCACCCCCGGACGC CCGGGCCTCCCTCCTGCTGCTGCAGTGCCTGTGGAGGTGGTGCCTGGAGCCCACGTGCCG GATGATGCCAGCCCTCGGCCCCCACCCCTCTCCCCCGGCCCTGTTCACCCTGTGCTGGGG GCCCCGGGGAGGAGGTGGGTTTAACGGGAGGGCCGGGCCCCCACCCGGCAGCCCCACCTC CCAGCCTCCATGGGGACGTGTCGTTTGGGGTCGCAGCCTTGTTGAATCTGAGTTCATTAA AGGGCAGCCTGAGAAGCGAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 435-553, - strand, RNAz p=0.903996 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 435-553, - strand, RNAz p=0.903996 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 247-357, gnl|bosTau2|chr19 (45608751-45608861) | |
| 247-357, gnl|canFam2|chr9 (3262913-3262817) | |
| 247-357, gnl|danRer3|chrUn (99997887-99997985) | |
| 247-357, gnl|dasNov1|scaffold_177768 (3275-3350) | |
| 247-357, gnl|echTel1|scaffold_112388 (344-246) | |
| 247-357, gnl|fr1|chrUn (227001247-227001345) | |
| 247-357, gnl|galGal2|chr18 (4771177-4771079) | |
| 247-357, gnl|Hg17|chr17 (77607447-77607557) | |
| 247-357, gnl|hg17|chr6 (90653473-90653571) | |
| 247-357, gnl|loxAfr1|scaffold_141718 (4855-4757) | |
| 247-357, gnl|Mm7|chr11 (120896917-120897027) | |
| 247-357, gnl|mm7|chr16 (62658456-62658552) | |
| 247-357, gnl|monDom2|scaffold_18 (15565686-15565784) | |
| 247-357, gnl|panTro1|chr5 (92373734-92373832) | |
| 247-357, gnl|rheMac2|chr4 (85771359-85771457) | |
| 247-357, gnl|tetNig1|chrUn_random (36700314-36700412) | |
| 247-357, gnl|xenTro1|scaffold_413 (858162-858260) | |
| 435-597, gnl|bosTau2|chr19 (45609106-45609268) | |
| 435-597, gnl|Hg17|chr17 (77607791-77607956) | |
| 435-597, gnl|Mm7|chr11 (120897286-120897452) | |
| 700-901, gnl|bosTau2|chr19 (45609524-45609736) | |
| 700-901, gnl|Hg17|chr17 (77608208-77608390) | |
| 700-901, gnl|Mm7|chr11 (120897705-120897916) | |
| 995-1095, gnl|bosTau2|chr19 (45609898-45609998) | |
| 995-1095, gnl|Hg17|chr17 (77608533-77608633) | |
| 995-1095, gnl|Mm7|chr11 (120898046-120898143) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 247-357, gnl|bosTau2|chr19 (45608751-45608861) | |
| 247-357, gnl|canFam2|chr9 (3262913-3262817) | |
| 247-357, gnl|danRer3|chrUn (99997887-99997985) | |
| 247-357, gnl|dasNov1|scaffold_177768 (3275-3350) | |
| 247-357, gnl|echTel1|scaffold_112388 (344-246) | |
| 247-357, gnl|fr1|chrUn (227001247-227001345) | |
| 247-357, gnl|galGal2|chr18 (4771177-4771079) | |
| 247-357, gnl|Hg17|chr17 (77607447-77607557) | |
| 247-357, gnl|hg17|chr6 (90653473-90653571) | |
| 247-357, gnl|loxAfr1|scaffold_141718 (4855-4757) | |
| 247-357, gnl|Mm7|chr11 (120896917-120897027) | |
| 247-357, gnl|mm7|chr16 (62658456-62658552) | |
| 247-357, gnl|monDom2|scaffold_18 (15565686-15565784) | |
| 247-357, gnl|panTro1|chr5 (92373734-92373832) | |
| 247-357, gnl|rheMac2|chr4 (85771359-85771457) | |
| 247-357, gnl|tetNig1|chrUn_random (36700314-36700412) | |
| 247-357, gnl|xenTro1|scaffold_413 (858162-858260) | |
| 435-597, gnl|bosTau2|chr19 (45609106-45609268) | |
| 435-597, gnl|Hg17|chr17 (77607791-77607956) | |
| 435-597, gnl|Mm7|chr11 (120897286-120897452) | |
| 700-901, gnl|bosTau2|chr19 (45609524-45609736) | |
| 700-901, gnl|Hg17|chr17 (77608208-77608390) | |
| 700-901, gnl|Mm7|chr11 (120897705-120897916) | |
| 995-1095, gnl|bosTau2|chr19 (45609898-45609998) | |
| 995-1095, gnl|Hg17|chr17 (77608533-77608633) | |
| 995-1095, gnl|Mm7|chr11 (120898046-120898143) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| fce (0.543183) | |
| nco (0.323468) | |
| ece (0.229305) | |
| mas (0.210305) | |
| nlu (0.191681) | |
| mcp (0.170648) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| ese (0.126502) | |
| med (0.116252) | |
| eje (0.0988338) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.543183) | |
| nco (0.323468) | |
| ece (0.229305) | |
| mas (0.210305) | |
| nlu (0.191681) | |
| mcp (0.170648) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| ese (0.126502) | |
| med (0.116252) | |
| eje (0.0988338) |