Non-Coding RNA Search

Ss1.1-Utr1-UTR010064E02.5

Sequence:


               
               GCACCGAGGTCATCATAGAGAAGCCAGCGGGGACGACCACTTCCGGCCGCCCCAGCCGCT
TCGCCGGCGCTGGTAAGCTCACGGCGCCCCCCGCCCGCCTCCCTCAGGGTCTCGCGGACT
CCGCCCTCTAGCGGAAACGTCTCCCTCCTTACCCAGCCCCCGCGCAGACGTAGTGCCGCG
CCCTCAGCTGCGGGACAAAGAGTGACGTCCGTAGCGGAGTTATGGCGGCCACCGAGCTGA
GCTTGGCGGCTACCGGGAGTCTCGCGCTGCCGTTGGGGAAAGAAGAAGGGGCCGGCCCGA
GCTCAGGCCCGGAGCGTGACTCTGCGGACTCCTTCTCGACTCCTGAGGCCCCACCGCCTG
CCCCCAAGCCCTCCAGCCCCAAGGCCGAGGTCGCCGAAGAGAATCCTACGCCTCACTCGG
CCGCCTCCGCCTCCCTGGAGCTGCCCCTCGGGCCCGCAGCCCTGGGCTCCGCGTCGTTTG
CCGAAGCAGCTCCGCGCTCACCCCCAGGCCCTGGCGGTTCCCGGCCCGGCCCAGAGACGT
TCCGCCAGCGATTCCGGCAGTTCCGCTACCAAGACGCGGCAGGCCCGCGGGAAGCGTTCC
GGCAGCTGCGGGAGCTTTCCCGCCAGTGGCTGCGGCCCGACATCCGCACGAAGGAGCAGA
TCGTGGAGATGCTGGTGCAAGAGCAGCTGCTCGCCATCCTGCCCGAGGCGGCGCGGGCCC
GGCGGCTTCGCCGCCGCACAGACGTACGCATTACAGGCTGAGCAGCCGGGCTGCCGGCGG
CCCGGCTCTCCATTCTGCGTTAATGAAAAACGAGTTTTGGCTGTTCCTGCAGTCTCGAGT
GTCCTTTTCGGTCGTCCTTTGCAATGTTTATTTCCCCGAGCCTATTTCCAACCTTTCTGA
CTGGTGGCGAAATCAAGTTGGGAGCTCATGAGAATAAAGCCTTTCTTATTCACTTGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACCGAGGTCATCATAGAGAAGCCAGCGGGGACGACCACTTCCGGCCGCCCCAGCCGCT
TCGCCGGCGCTGGTAAGCTCACGGCGCCCCCCGCCCGCCTCCCTCAGGGTCTCGCGGACT
CCGCCCTCTAGCGGAAACGTCTCCCTCCTTACCCAGCCCCCGCGCAGACGTAGTGCCGCG
CCCTCAGCTGCGGGACAAAGAGTGACGTCCGTAGCGGAGTTATGGCGGCCACCGAGCTGA
GCTTGGCGGCTACCGGGAGTCTCGCGCTGCCGTTGGGGAAAGAAGAAGGGGCCGGCCCGA
GCTCAGGCCCGGAGCGTGACTCTGCGGACTCCTTCTCGACTCCTGAGGCCCCACCGCCTG
CCCCCAAGCCCTCCAGCCCCAAGGCCGAGGTCGCCGAAGAGAATCCTACGCCTCACTCGG
CCGCCTCCGCCTCCCTGGAGCTGCCCCTCGGGCCCGCAGCCCTGGGCTCCGCGTCGTTTG
CCGAAGCAGCTCCGCGCTCACCCCCAGGCCCTGGCGGTTCCCGGCCCGGCCCAGAGACGT
TCCGCCAGCGATTCCGGCAGTTCCGCTACCAAGACGCGGCAGGCCCGCGGGAAGCGTTCC
GGCAGCTGCGGGAGCTTTCCCGCCAGTGGCTGCGGCCCGACATCCGCACGAAGGAGCAGA
TCGTGGAGATGCTGGTGCAAGAGCAGCTGCTCGCCATCCTGCCCGAGGCGGCGCGGGCCC
GGCGGCTTCGCCGCCGCACAGACGTACGCATTACAGGCTGAGCAGCCGGGCTGCCGGCGG
CCCGGCTCTCCATTCTGCGTTAATGAAAAACGAGTTTTGGCTGTTCCTGCAGTCTCGAGT
GTCCTTTTCGGTCGTCCTTTGCAATGTTTATTTCCCCGAGCCTATTTCCAACCTTTCTGA
CTGGTGGCGAAATCAAGTTGGGAGCTCATGAGAATAAAGCCTTTCTTATTCACTTGAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9NZG6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9NZG6_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-788, gnl|bosTau2|chr13 (46205660-46206438)
               

               
               1-788, gnl|Hg17|chr20 (34005852-34005054)
               

               
               1-788, gnl|Mm7|chr2 (156053404-156052765)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-788, gnl|bosTau2|chr13 (46205660-46206438)
               

               
               1-788, gnl|Hg17|chr20 (34005852-34005054)
               

               
               1-788, gnl|Mm7|chr2 (156053404-156052765)

Expressed library(ies): 30 entry(ies)

More info

Expressed library(ies): 30 entry(ies)

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               elu (1.15607)
               

               
               hyp (0.571347)
               

               
               duo (0.518403)
               

               
               ece (0.45861)
               

               
               cly (0.361925)
               

               
               eru (0.360144)
               

               
               pgl (0.35545)
               

               
               ecc (0.345105)
               

               
               nje (0.33184)
               

               
               cag (0.302389)
               

               
               hlv (0.278513)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               ute (0.265569)
               

               
               eep (0.245128)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (1.15607)
               

               
               hyp (0.571347)
               

               
               duo (0.518403)
               

               
               ece (0.45861)
               

               
               cly (0.361925)
               

               
               eru (0.360144)
               

               
               pgl (0.35545)
               

               
               ecc (0.345105)
               

               
               nje (0.33184)
               

               
               cag (0.302389)
               

               
               hlv (0.278513)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               ute (0.265569)
               

               
               eep (0.245128)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	1-788, gnl\|bosTau2\|chr13 (46205660-46206438)
	1-788, gnl\|Hg17\|chr20 (34005852-34005054)
	1-788, gnl\|Mm7\|chr2 (156053404-156052765)

	elu (1.15607)
	hyp (0.571347)
	duo (0.518403)
	ece (0.45861)
	cly (0.361925)
	eru (0.360144)
	pgl (0.35545)
	ecc (0.345105)
	nje (0.33184)
	cag (0.302389)
	hlv (0.278513)
	nca (0.273748)
	fce (0.271592)
	ute (0.265569)
	eep (0.245128)
	fcc (0.197785)
	nep (0.183925)
	fbs (0.175346)
	eye (0.170503)
	fhi (0.169578)
	nco (0.161734)
	cst (0.140036)
	pla (0.133672)
	lyg (0.133103)
	cov (0.132153)
	ebs (0.118301)
	med (0.116252)
	jca (0.11396)
	nbm (0.0993246)
	jej (0.0989218)