Ss1.1-Utr1-UTR010066D08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCCCTCTGTCGCCTGCCGCTCAGTCCAGCCCGCACAGCCAGCATGTCCGTCCACTTCA GCTCCCAGGTCTTCAGCTCGCGCTCGGCCGCCTTCCCGGGGCGCGGCACCCAGGGGCGCC TGAGCTCAGCGCGCCTCGGTGGCTTGGGCAGCAGCAGCAGCAGCAGCCTCTACGGCCTGA GCGCCTCGCGGCCGCGCGTGGCCGTGCGCTCATCCTACGGGGCCCCCGTGGGCGCGGGCA TCCGCGAGGTCACCATCAATCAGAACCTGCTGACCCCGCTGCAGGTGGACATCGACCCCT CCATCCAGCAGGTGCGCCAGGAGGAGCGGGAGCAGATCAAGACCCTCAACAACAAGTTCG CCTCGTTCATCGACAAGGTGCGGTTCCTGGAGCAGCAGAACAAGCTGCTGGAGACCAAGT GGGCGCTGCTGCAGGAGCAGAAGTCGACCAAGAGCAGCCGCCTTCCTGGCATCTTTGAGG CCCAGATTGCTGGCCTGCGGAAGCAGCTTGAAGCACTGCAGCTGGATGGGGGCCGCCTGG AGGCGGAGCTTCGGAGCACGCAGGACATCGTGGAAGACTTCAAGAATAAGTATGAAGATG AAATTAACCATCGCACGGCTGCTGAGAATGAGTTCGTGGTGCTGAAGAAGGATGTGGATA TCGCCTACATGAACAAGGTGGAGTTGGAGGCCAAGGTGGACGCCCTGAATGATGAGATCA GCTTCCTCAGGACCCTCTACGAGGAGGAGTTGAAAGAGCTGCAGTCCAAGGTCTCGGACA CCTCCGTGGTCCTCTCCATGGACAATAGCCGCTCCCTGGACCTGGACGGCATCATCGCCG AGGTCAAGGCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCCCTCTGTCGCCTGCCGCTCAGTCCAGCCCGCACAGCCAGCATGTCCGTCCACTTCA GCTCCCAGGTCTTCAGCTCGCGCTCGGCCGCCTTCCCGGGGCGCGGCACCCAGGGGCGCC TGAGCTCAGCGCGCCTCGGTGGCTTGGGCAGCAGCAGCAGCAGCAGCCTCTACGGCCTGA GCGCCTCGCGGCCGCGCGTGGCCGTGCGCTCATCCTACGGGGCCCCCGTGGGCGCGGGCA TCCGCGAGGTCACCATCAATCAGAACCTGCTGACCCCGCTGCAGGTGGACATCGACCCCT CCATCCAGCAGGTGCGCCAGGAGGAGCGGGAGCAGATCAAGACCCTCAACAACAAGTTCG CCTCGTTCATCGACAAGGTGCGGTTCCTGGAGCAGCAGAACAAGCTGCTGGAGACCAAGT GGGCGCTGCTGCAGGAGCAGAAGTCGACCAAGAGCAGCCGCCTTCCTGGCATCTTTGAGG CCCAGATTGCTGGCCTGCGGAAGCAGCTTGAAGCACTGCAGCTGGATGGGGGCCGCCTGG AGGCGGAGCTTCGGAGCACGCAGGACATCGTGGAAGACTTCAAGAATAAGTATGAAGATG AAATTAACCATCGCACGGCTGCTGAGAATGAGTTCGTGGTGCTGAAGAAGGATGTGGATA TCGCCTACATGAACAAGGTGGAGTTGGAGGCCAAGGTGGACGCCCTGAATGATGAGATCA GCTTCCTCAGGACCCTCTACGAGGAGGAGTTGAAAGAGCTGCAGTCCAAGGTCTCGGACA CCTCCGTGGTCCTCTCCATGGACAATAGCCGCTCCCTGGACCTGGACGGCATCATCGCCG AGGTCAAGGCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 745-852, + strand, RNAz p=0.649031 | |
| 746-852, - strand, RNAz p=0.975146 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 745-852, + strand, RNAz p=0.649031 | |
| 746-852, - strand, RNAz p=0.975146 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 137-394, gnl|bosTau2|chr5 (19671829-19671569) | |
| 137-394, gnl|Hg17|chr12 (50938464-50938204) | |
| 137-394, gnl|Mm7|chr15 (101424787-101424527) | |
| 189-393, gnl|bosTau2|chr5 (20103720-20103517) | |
| 189-393, gnl|Hg17|chr12 (51281267-51281064) | |
| 189-393, gnl|Mm7|chr15 (101772352-101772149) | |
| 236-392, gnl|bosTau2|chr5 (20123775-20123618) | |
| 236-392, gnl|Hg17|chr12 (51298270-51298113) | |
| 236-392, gnl|Mm7|chr15 (101788152-101788005) | |
| 237-380, gnl|bosTau2|chr5 (20323034-20322891) | |
| 237-380, gnl|canFam2|chr27 (5274274-5274134) | |
| 237-380, gnl|danRer3|chr23 (6316078-6316208) | |
| 237-380, gnl|dasNov1|scaffold_235420 (3662-3521) | |
| 237-380, gnl|echTel1|scaffold_228244 (304-164) | |
| 237-380, gnl|fr1|chrUn (50195596-50195726) | |
| 237-380, gnl|galGal2|chrUn (7709227-7709087) | |
| 237-380, gnl|hg17|chr12 (51513831-51513971) | |
| 237-380, gnl|Hg17|chr12 (51513975-51513832) | |
| 237-380, gnl|loxAfr1|scaffold_3302 (51260-51400) | |
| 237-380, gnl|mm7|chr15 (101925900-101926040) | |
| 237-380, gnl|Mm7|chr15 (101926044-101925897) | |
| 237-380, gnl|monDom2|scaffold_168 (463007-463147) | |
| 237-380, gnl|oryCun1|scaffold_193848 (13102-13242) | |
| 237-380, gnl|panTro1|chr10 (52739906-52740046) | |
| 237-380, gnl|rheMac2|chr11 (49901741-49901881) | |
| 237-380, gnl|rn3|chr7 (140720412-140720552) | |
| 237-380, gnl|tetNig1|chrUn_random (43165341-43165214) | |
| 237-380, gnl|xenTro1|scaffold_312 (1286883-1287023) | |
| 745-852, gnl|bosTau2|chr5 (20376009-20375902) | |
| 745-852, gnl|canFam2|chr27 (5231198-5231046) | |
| 745-852, gnl|danRer3|chr23 (6428398-6428552) | |
| 745-852, gnl|dasNov1|scaffold_13898 (5420-5266) | |
| 745-852, gnl|echTel1|scaffold_280753 (5715-5862) | |
| 745-852, gnl|fr1|chrUn (50208037-50208191) | |
| 745-852, gnl|galGal2|chrUn (7864974-7865128) | |
| 745-852, gnl|hg17|chr12 (51579953-51580107) | |
| 745-852, gnl|Hg17|chr12 (51580118-51580011) | |
| 745-852, gnl|loxAfr1|scaffold_14351 (1093-1247) | |
| 745-852, gnl|mm7|chr15 (101984932-101985086) | |
| 745-852, gnl|Mm7|chr15 (101985097-101984990) | |
| 745-852, gnl|monDom2|scaffold_168 (486187-486341) | |
| 745-852, gnl|oryCun1|scaffold_203303 (46436-46282) | |
| 745-852, gnl|panTro1|chr10 (52806170-52806324) | |
| 745-852, gnl|rheMac2|chr11 (49967444-49967598) | |
| 745-852, gnl|rn3|chr7 (140792709-140792863) | |
| 745-852, gnl|tetNig1|chrUn_random (43154104-43153950) | |
| 745-852, gnl|xenTro1|scaffold_312 (1280786-1280940) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 137-394, gnl|bosTau2|chr5 (19671829-19671569) | |
| 137-394, gnl|Hg17|chr12 (50938464-50938204) | |
| 137-394, gnl|Mm7|chr15 (101424787-101424527) | |
| 189-393, gnl|bosTau2|chr5 (20103720-20103517) | |
| 189-393, gnl|Hg17|chr12 (51281267-51281064) | |
| 189-393, gnl|Mm7|chr15 (101772352-101772149) | |
| 236-392, gnl|bosTau2|chr5 (20123775-20123618) | |
| 236-392, gnl|Hg17|chr12 (51298270-51298113) | |
| 236-392, gnl|Mm7|chr15 (101788152-101788005) | |
| 237-380, gnl|bosTau2|chr5 (20323034-20322891) | |
| 237-380, gnl|canFam2|chr27 (5274274-5274134) | |
| 237-380, gnl|danRer3|chr23 (6316078-6316208) | |
| 237-380, gnl|dasNov1|scaffold_235420 (3662-3521) | |
| 237-380, gnl|echTel1|scaffold_228244 (304-164) | |
| 237-380, gnl|fr1|chrUn (50195596-50195726) | |
| 237-380, gnl|galGal2|chrUn (7709227-7709087) | |
| 237-380, gnl|hg17|chr12 (51513831-51513971) | |
| 237-380, gnl|Hg17|chr12 (51513975-51513832) | |
| 237-380, gnl|loxAfr1|scaffold_3302 (51260-51400) | |
| 237-380, gnl|mm7|chr15 (101925900-101926040) | |
| 237-380, gnl|Mm7|chr15 (101926044-101925897) | |
| 237-380, gnl|monDom2|scaffold_168 (463007-463147) | |
| 237-380, gnl|oryCun1|scaffold_193848 (13102-13242) | |
| 237-380, gnl|panTro1|chr10 (52739906-52740046) | |
| 237-380, gnl|rheMac2|chr11 (49901741-49901881) | |
| 237-380, gnl|rn3|chr7 (140720412-140720552) | |
| 237-380, gnl|tetNig1|chrUn_random (43165341-43165214) | |
| 237-380, gnl|xenTro1|scaffold_312 (1286883-1287023) | |
| 745-852, gnl|bosTau2|chr5 (20376009-20375902) | |
| 745-852, gnl|canFam2|chr27 (5231198-5231046) | |
| 745-852, gnl|danRer3|chr23 (6428398-6428552) | |
| 745-852, gnl|dasNov1|scaffold_13898 (5420-5266) | |
| 745-852, gnl|echTel1|scaffold_280753 (5715-5862) | |
| 745-852, gnl|fr1|chrUn (50208037-50208191) | |
| 745-852, gnl|galGal2|chrUn (7864974-7865128) | |
| 745-852, gnl|hg17|chr12 (51579953-51580107) | |
| 745-852, gnl|Hg17|chr12 (51580118-51580011) | |
| 745-852, gnl|loxAfr1|scaffold_14351 (1093-1247) | |
| 745-852, gnl|mm7|chr15 (101984932-101985086) | |
| 745-852, gnl|Mm7|chr15 (101985097-101984990) | |
| 745-852, gnl|monDom2|scaffold_168 (486187-486341) | |
| 745-852, gnl|oryCun1|scaffold_203303 (46436-46282) | |
| 745-852, gnl|panTro1|chr10 (52806170-52806324) | |
| 745-852, gnl|rheMac2|chr11 (49967444-49967598) | |
| 745-852, gnl|rn3|chr7 (140792709-140792863) | |
| 745-852, gnl|tetNig1|chrUn_random (43154104-43153950) | |
| 745-852, gnl|xenTro1|scaffold_312 (1280786-1280940) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| mcp (0.170648) | |
| pty (0.142714) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) | |
| pty (0.142714) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) |