Ss1.1-Utr1-UTR010066D12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGATGGTCAGGGCAAGGGAGATGATGTCATCGTGATTGACAGCGATGATGAAGAGGAA GATGATGATGAAAATGATGGGGAACATGAGGATTATGAAGAAGATGAGGAAGATGATGAT GATGATGAAGATGACACAGGGATGGGAGATGAGGGTGAAGATAGCAACGAAGGCACCGGA AGTGCAGATGGTAACGATGGATATGAAGCCGATGATGCGGAGGGTGGTGATGGGACTGAT CCAGGTACAGAAACAGAAGAAAGTATGGGTGGAGGTGAAAGTAATCAGAGAGCAGCTGAT TCTCAAAACAGTGGTGAAGGAAATACTGGTACTGCAGAGTCGTCTTTTTCCCAGGAGATT TCTAGAGAACAGCAGCCATCATCAGCATCTGAAAGACAGGCACCTAGAGCACCTCAGTCA CCGAGACGCCCGCCACACCCACTTCCCCCAAGACTGACCATTCACGCTCCACCTCAAGAG TTGGGACCACCAGTTCAGAGAATTCAGATGACTCGGAGGCAGTCTGTGGGACGTGGACTT CAGTTGACTCCAGGAATAGGTGGCATGCAGCAGCATTTTTTTGATGATGAAGATAGAACA GTTCCAAGTACTCCAACGCTTGTGGTGCCACATCGTACTGATGGATTTGCTGAAGCAATT CATTCTCCACAGGTTGCTGGTGTTCCTAGATTCCGGTTTGGGCCACCTGAAGATATGCCG CAGACAAGTTCTAGTCACTCTGATCTTGGCCAGCTTGCTTCTCAAGGAGGTTTGGGAATG TATGAAACACCCCTTTTCCTAGCTCACGAAGAGGAGTCGGGAGGCAGAAGTGTTCCCACT ACTCCCCTACAAGTAGCAGCCCCAGTGACTGTATTTACTGAGAGTACCACCTCTGATGCT TCAGAGCATGCTTCTCAGTCTGTTCCAATGGTGACAACATCCACTGGCACTTTATCCACA ACAAATGAAACAGCAGCAGGTGATGATGGAGATGAAGTATTTGTGGAGGCAGAATCTGAA GGTATTAGTTCAGAAGCAGGCCTAGAAATTGATAGCCAGCAGGAAGAAGAGCCTGTTCAG GCATCGGATGAGTCAGATCTTCCTTCCACCAGCCAGGACCCCCCTTCCAGTTCTTCCGTA GATACCAGCAGTAGTCAGCCAAAACCTTTCAGACGAGTAAGACTTCAGACAACATTGAGG CCAGGTGTCCGTGGTCGTCAGTTTAACAGACAGAGAGGTGTGAGCCATGCAATGGGAGGG AGAGGAGGAATAAATAGAGGAAATATTAATTAAATGTTCTGTAAAATGTAATAACTGTGA ATAAGATTGCCAAATCTGTTTTAGTGTAATGATTGTCAAGTTTAAAAACATTTTTGTATT TAAATTGCTGTGCTTATCTCAACATTCTTTATTAATAAAATGTATTTCAGTGTCAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGATGGTCAGGGCAAGGGAGATGATGTCATCGTGATTGACAGCGATGATGAAGAGGAA GATGATGATGAAAATGATGGGGAACATGAGGATTATGAAGAAGATGAGGAAGATGATGAT GATGATGAAGATGACACAGGGATGGGAGATGAGGGTGAAGATAGCAACGAAGGCACCGGA AGTGCAGATGGTAACGATGGATATGAAGCCGATGATGCGGAGGGTGGTGATGGGACTGAT CCAGGTACAGAAACAGAAGAAAGTATGGGTGGAGGTGAAAGTAATCAGAGAGCAGCTGAT TCTCAAAACAGTGGTGAAGGAAATACTGGTACTGCAGAGTCGTCTTTTTCCCAGGAGATT TCTAGAGAACAGCAGCCATCATCAGCATCTGAAAGACAGGCACCTAGAGCACCTCAGTCA CCGAGACGCCCGCCACACCCACTTCCCCCAAGACTGACCATTCACGCTCCACCTCAAGAG TTGGGACCACCAGTTCAGAGAATTCAGATGACTCGGAGGCAGTCTGTGGGACGTGGACTT CAGTTGACTCCAGGAATAGGTGGCATGCAGCAGCATTTTTTTGATGATGAAGATAGAACA GTTCCAAGTACTCCAACGCTTGTGGTGCCACATCGTACTGATGGATTTGCTGAAGCAATT CATTCTCCACAGGTTGCTGGTGTTCCTAGATTCCGGTTTGGGCCACCTGAAGATATGCCG CAGACAAGTTCTAGTCACTCTGATCTTGGCCAGCTTGCTTCTCAAGGAGGTTTGGGAATG TATGAAACACCCCTTTTCCTAGCTCACGAAGAGGAGTCGGGAGGCAGAAGTGTTCCCACT ACTCCCCTACAAGTAGCAGCCCCAGTGACTGTATTTACTGAGAGTACCACCTCTGATGCT TCAGAGCATGCTTCTCAGTCTGTTCCAATGGTGACAACATCCACTGGCACTTTATCCACA ACAAATGAAACAGCAGCAGGTGATGATGGAGATGAAGTATTTGTGGAGGCAGAATCTGAA GGTATTAGTTCAGAAGCAGGCCTAGAAATTGATAGCCAGCAGGAAGAAGAGCCTGTTCAG GCATCGGATGAGTCAGATCTTCCTTCCACCAGCCAGGACCCCCCTTCCAGTTCTTCCGTA GATACCAGCAGTAGTCAGCCAAAACCTTTCAGACGAGTAAGACTTCAGACAACATTGAGG CCAGGTGTCCGTGGTCGTCAGTTTAACAGACAGAGAGGTGTGAGCCATGCAATGGGAGGG AGAGGAGGAATAAATAGAGGAAATATTAATTAAATGTTCTGTAAAATGTAATAACTGTGA ATAAGATTGCCAAATCTGTTTTAGTGTAATGATTGTCAAGTTTAAAAACATTTTTGTATT TAAATTGCTGTGCTTATCTCAACATTCTTTATTAATAAAATGTATTTCAGTGTCAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 89-223, gnl|bosTau2|chr16 (49046780-49046914) | |
| 89-223, gnl|Hg17|chr1 (183027026-183026892) | |
| 89-223, gnl|Mm7|chr1 (150365720-150365854) | |
| 313-513, gnl|bosTau2|chr16 (49048966-49049165) | |
| 313-513, gnl|Hg17|chr1 (183024660-183024461) | |
| 313-513, gnl|Mm7|chr1 (150367713-150367912) | |
| 663-771, gnl|bosTau2|chr16 (49054639-49054747) | |
| 663-771, gnl|canFam2|chr7 (22347661-22347797) | |
| 663-771, gnl|dasNov1|scaffold_784 (139180-139044) | |
| 663-771, gnl|echTel1|scaffold_290239 (7328-7230) | |
| 663-771, gnl|fr1|chrUn (175403469-175403353) | |
| 663-771, gnl|galGal2|chr8 (9902882-9902736) | |
| 663-771, gnl|hg17|chr1 (183021096-183021228) | |
| 663-771, gnl|Hg17|chr1 (183021207-183021099) | |
| 663-771, gnl|mm7|chr1 (150370137-150370004) | |
| 663-771, gnl|Mm7|chr1 (150370023-150370131) | |
| 663-771, gnl|monDom2|scaffold_16 (40713920-40714054) | |
| 663-771, gnl|oryCun1|scaffold_202902 (11320-11457) | |
| 663-771, gnl|panTro1|chr1 (165601977-165602109) | |
| 663-771, gnl|rheMac2|chr1 (184406208-184406076) | |
| 663-771, gnl|rn3|chr13 (64762057-64761924) | |
| 663-771, gnl|tetNig1|chr1 (15415267-15415148) | |
| 663-771, gnl|xenTro1|scaffold_160 (1482938-1482790) | |
| 864-1022, gnl|bosTau2|chr16 (49056420-49056578) | |
| 864-1022, gnl|Hg17|chr1 (183019394-183019236) | |
| 864-1022, gnl|Mm7|chr1 (150371738-150371896) | |
| 1208-1444, gnl|bosTau2|chr6 (50426996-50426760) | |
| 1208-1444, gnl|Hg17|chr1 (183015446-183014615) | |
| 1236-1436, gnl|bosTau2|chr16 (49062337-49062537) | |
| 1236-1436, gnl|canFam2|chr7 (22341086-22341433) | |
| 1236-1436, gnl|dasNov1|scaffold_784 (151576-151222) | |
| 1236-1436, gnl|echTel1|scaffold_311559 (17089-17441) | |
| 1236-1436, gnl|galGal2|chr8 (9907791-9907436) | |
| 1236-1436, gnl|hg17|chr1 (183014558-183014899) | |
| 1236-1436, gnl|Hg17|chr1 (183014817-183014617) | |
| 1236-1436, gnl|loxAfr1|scaffold_84451 (4511-4161) | |
| 1236-1436, gnl|mm7|chr1 (150375650-150375353) | |
| 1236-1436, gnl|Mm7|chr1 (150375385-150375584) | |
| 1236-1436, gnl|monDom2|scaffold_16 (40706591-40706935) | |
| 1236-1436, gnl|panTro1|chr1 (165595383-165595724) | |
| 1236-1436, gnl|rheMac2|chr1 (184413060-184412713) | |
| 1236-1436, gnl|rn3|chr13 (64767697-64767407) | |
| 1236-1436, gnl|xenTro1|scaffold_160 (1488463-1488213) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 89-223, gnl|bosTau2|chr16 (49046780-49046914) | |
| 89-223, gnl|Hg17|chr1 (183027026-183026892) | |
| 89-223, gnl|Mm7|chr1 (150365720-150365854) | |
| 313-513, gnl|bosTau2|chr16 (49048966-49049165) | |
| 313-513, gnl|Hg17|chr1 (183024660-183024461) | |
| 313-513, gnl|Mm7|chr1 (150367713-150367912) | |
| 663-771, gnl|bosTau2|chr16 (49054639-49054747) | |
| 663-771, gnl|canFam2|chr7 (22347661-22347797) | |
| 663-771, gnl|dasNov1|scaffold_784 (139180-139044) | |
| 663-771, gnl|echTel1|scaffold_290239 (7328-7230) | |
| 663-771, gnl|fr1|chrUn (175403469-175403353) | |
| 663-771, gnl|galGal2|chr8 (9902882-9902736) | |
| 663-771, gnl|hg17|chr1 (183021096-183021228) | |
| 663-771, gnl|Hg17|chr1 (183021207-183021099) | |
| 663-771, gnl|mm7|chr1 (150370137-150370004) | |
| 663-771, gnl|Mm7|chr1 (150370023-150370131) | |
| 663-771, gnl|monDom2|scaffold_16 (40713920-40714054) | |
| 663-771, gnl|oryCun1|scaffold_202902 (11320-11457) | |
| 663-771, gnl|panTro1|chr1 (165601977-165602109) | |
| 663-771, gnl|rheMac2|chr1 (184406208-184406076) | |
| 663-771, gnl|rn3|chr13 (64762057-64761924) | |
| 663-771, gnl|tetNig1|chr1 (15415267-15415148) | |
| 663-771, gnl|xenTro1|scaffold_160 (1482938-1482790) | |
| 864-1022, gnl|bosTau2|chr16 (49056420-49056578) | |
| 864-1022, gnl|Hg17|chr1 (183019394-183019236) | |
| 864-1022, gnl|Mm7|chr1 (150371738-150371896) | |
| 1208-1444, gnl|bosTau2|chr6 (50426996-50426760) | |
| 1208-1444, gnl|Hg17|chr1 (183015446-183014615) | |
| 1236-1436, gnl|bosTau2|chr16 (49062337-49062537) | |
| 1236-1436, gnl|canFam2|chr7 (22341086-22341433) | |
| 1236-1436, gnl|dasNov1|scaffold_784 (151576-151222) | |
| 1236-1436, gnl|echTel1|scaffold_311559 (17089-17441) | |
| 1236-1436, gnl|galGal2|chr8 (9907791-9907436) | |
| 1236-1436, gnl|hg17|chr1 (183014558-183014899) | |
| 1236-1436, gnl|Hg17|chr1 (183014817-183014617) | |
| 1236-1436, gnl|loxAfr1|scaffold_84451 (4511-4161) | |
| 1236-1436, gnl|mm7|chr1 (150375650-150375353) | |
| 1236-1436, gnl|Mm7|chr1 (150375385-150375584) | |
| 1236-1436, gnl|monDom2|scaffold_16 (40706591-40706935) | |
| 1236-1436, gnl|panTro1|chr1 (165595383-165595724) | |
| 1236-1436, gnl|rheMac2|chr1 (184413060-184412713) | |
| 1236-1436, gnl|rn3|chr13 (64767697-64767407) | |
| 1236-1436, gnl|xenTro1|scaffold_160 (1488463-1488213) |
| Expressed library(ies): 35 entry(ies) | More info |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
| sto (1.61841) | |
| cmu (0.931966) | |
| gul (0.887942) | |
| cje (0.660939) | |
| cte (0.58548) | |
| spc (0.566829) | |
| ret (0.514933) | |
| csk (0.422238) | |
| rec (0.346141) | |
| cut (0.339847) | |
| liv (0.292569) | |
| lyg (0.266205) | |
| ova (0.258264) | |
| cbr (0.255951) | |
| sug (0.254582) | |
| thg (0.253582) | |
| bla (0.248694) | |
| cbe (0.239234) | |
| tes (0.207814) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| fco (0.157208) | |
| isp (0.150376) | |
| ski (0.146735) | |
| lin (0.145603) | |
| cst (0.140036) | |
| nca (0.136874) | |
| che (0.136314) | |
| nmm (0.132802) | |
| cly (0.120642) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sto (1.61841) | |
| cmu (0.931966) | |
| gul (0.887942) | |
| cje (0.660939) | |
| cte (0.58548) | |
| spc (0.566829) | |
| ret (0.514933) | |
| csk (0.422238) | |
| rec (0.346141) | |
| cut (0.339847) | |
| liv (0.292569) | |
| lyg (0.266205) | |
| ova (0.258264) | |
| cbr (0.255951) | |
| sug (0.254582) | |
| thg (0.253582) | |
| bla (0.248694) | |
| cbe (0.239234) | |
| tes (0.207814) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| fco (0.157208) | |
| isp (0.150376) | |
| ski (0.146735) | |
| lin (0.145603) | |
| cst (0.140036) | |
| nca (0.136874) | |
| che (0.136314) | |
| nmm (0.132802) | |
| cly (0.120642) | |
| cty (0.10408) | |
| ldo (0.0970026) |