Non-Coding RNA Search

Ss1.1-Utr1-UTR010068A05.5

Sequence:


               
               CTGCTGGTGAGGCTGTGACGCCGAGTTCTCAGCTTCCCGCCGATCCTGTCCAGACGCTCC
GTCTTGGTCATAGCCGACTGCCCCAATACCCTTCCCTGAGCTCCCCTTGCCACCACACAC
CCTAAACCTGTGTGCAGGGTCCGAGGAAGCTGCGCGGAATCCAGCCGCCTTGGGAGGCCG
TTCTGGGACCGGGAGGTCCGGGCAGGTAGGCGTCCAGCCGCTCGCTGACCGAAGGCTGCG
TCGTGTCGCCGGTTCTGCAGGCACCATGAGCCAGGACACCGAGGTGGACATGAAGGAAGT
GGAGCTGAACGAGCTGGAACCCGAGAAGCAGCCGATGAACGCGGCGTCTGGGGCAGCCGT
GGTCGTGTCGGGCGGCCCCGAGAAGAATGGTCTGGTGAAGATTAAGGTGGCCGACGATGA
GGCAGACGCGGCAGCAGCCAAGTTCACGGGCCTGTCTAAAGAGGAGCTGCTGAAGGTGGC
GGGAAGCCCCGGCTGGGTGCGCACCCGCTGGGCGCTGCTGCTGCTCTTTTGGCTCGGCTG
GCTGGGTATGCTGGCGGGCGCCGTGGTCATCATCGTGCAGGCGCCACGCTGCCGCGAGCT
GCCCGCGCAGAGCTGGTGGCACAAGGGCGCCCTCTACCGCATTGGCGACCTTCAGGCTTT
CCAGGGCCGCGACGCGGGAGACCTAGCGAGCCTGAAGGGGCATCTTGATTACTTGAGCAC
CCTGAAGGTGAAAGGTTTTGTGCTGGGCCCAATTCACAAGCACCAGAAGGATGACCTCGC
AGGCACCGACTTGGAACAGATCGACCCCGCTTTCGGTTCTAAGGAAGATTTTGACAGTCT
CCTGCAATCGGCCAAGAAAAAGAGCATCCGGGTCATTCTAGACCTCACTCCCAACTATAA
GGGCCAGAACTCATGGTTCGACTCCACTCAGGTGGACACTGTGGCTGCCAAGATGAAGGA
AGCTCTGAGTTTTTGGCTGCAGGCCGGTGTGGATGGGTTCCAGGTTCGGGACGTGGGGGA
TCTGCCAGGCGCGTCTTCATTCCTGGCTGAGTGGCAGAACCTCACTAAGAGCTTCAGCGA
GGATAGGCTCTTGATTGCAGGCACCGACTCCTCCGACCTACAGCAGATCCTGAGCCTCCT
CGAACCCACCAAGGACCTGTTGTTAACTAGCTCGTACCTGTCCAACTCCTCTTTCACGGG
GAAGCAAACCAGTTTCCTGGTCACGCAGTATTTGAATGCCACTGGCAGTCGCTGGTGCAG
CTGGAGCTTGTCGCAGGCGGGGCTTCTGACCTCCTCTGTGCCGTCTCACCTCCTCCGGCT
CTACCAGCTGCTGCTCTTCACTCTGCCCGGGACCCCAGTGTTCAGCTACGGAGACGAGAT
TGGCCTGGAGGAAGCGGTCCTCCCTGGACAGCCTGTGAAGGCCCCGGTCATGCCATGGGA
TGAATCCAGCCTTCCCAGCACCTTAGGACCTGTAAACAGCAGCAGCGTGACTGTGAAGGG
CCAGAGCGGAGACCCTGGCTCCCTCCTCTCCCTGTTCCGCTGGCTGAGTGATCTGCGGGG
GAAGGAGCGCTCCCTGCTGCACGGAGACTTCCACGCGCTCTCCTCGGGGCCCGACCTCTT
CTCCTACATCCGCCAGTGGGACCAGAACGAGCGCTTCCTGATAGTGCTCAACTTCGGGGA
TGTGGGCCAACCTGCCAGGCTGGGGGCCTCCAGCCTGCCCTCCAGTGTGGATCTGCTGCT
CAGCACCCAGCCAGGCCGCAAGGAGGGCACCCCTCTCCAGCTGGAGCACCTGAACCTGGA
GCCCTATGAGGGGCTGCTGCTCCGCTTCCCCTATGTGGCCTGACCCCGACCCCCTGACCT
CCCCCACCCCCAGGCCCTTTGGGTTCTGGTTTCTCTCTTCTTTTCTTTCTTTCTTTTTTT
TTTGACTGTTACAGATGAACTCCCAAATAGGGCATTTTCTGCTTCAAATAAATGTCAGCC
CCCTGCCTGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCTGGTGAGGCTGTGACGCCGAGTTCTCAGCTTCCCGCCGATCCTGTCCAGACGCTCC
GTCTTGGTCATAGCCGACTGCCCCAATACCCTTCCCTGAGCTCCCCTTGCCACCACACAC
CCTAAACCTGTGTGCAGGGTCCGAGGAAGCTGCGCGGAATCCAGCCGCCTTGGGAGGCCG
TTCTGGGACCGGGAGGTCCGGGCAGGTAGGCGTCCAGCCGCTCGCTGACCGAAGGCTGCG
TCGTGTCGCCGGTTCTGCAGGCACCATGAGCCAGGACACCGAGGTGGACATGAAGGAAGT
GGAGCTGAACGAGCTGGAACCCGAGAAGCAGCCGATGAACGCGGCGTCTGGGGCAGCCGT
GGTCGTGTCGGGCGGCCCCGAGAAGAATGGTCTGGTGAAGATTAAGGTGGCCGACGATGA
GGCAGACGCGGCAGCAGCCAAGTTCACGGGCCTGTCTAAAGAGGAGCTGCTGAAGGTGGC
GGGAAGCCCCGGCTGGGTGCGCACCCGCTGGGCGCTGCTGCTGCTCTTTTGGCTCGGCTG
GCTGGGTATGCTGGCGGGCGCCGTGGTCATCATCGTGCAGGCGCCACGCTGCCGCGAGCT
GCCCGCGCAGAGCTGGTGGCACAAGGGCGCCCTCTACCGCATTGGCGACCTTCAGGCTTT
CCAGGGCCGCGACGCGGGAGACCTAGCGAGCCTGAAGGGGCATCTTGATTACTTGAGCAC
CCTGAAGGTGAAAGGTTTTGTGCTGGGCCCAATTCACAAGCACCAGAAGGATGACCTCGC
AGGCACCGACTTGGAACAGATCGACCCCGCTTTCGGTTCTAAGGAAGATTTTGACAGTCT
CCTGCAATCGGCCAAGAAAAAGAGCATCCGGGTCATTCTAGACCTCACTCCCAACTATAA
GGGCCAGAACTCATGGTTCGACTCCACTCAGGTGGACACTGTGGCTGCCAAGATGAAGGA
AGCTCTGAGTTTTTGGCTGCAGGCCGGTGTGGATGGGTTCCAGGTTCGGGACGTGGGGGA
TCTGCCAGGCGCGTCTTCATTCCTGGCTGAGTGGCAGAACCTCACTAAGAGCTTCAGCGA
GGATAGGCTCTTGATTGCAGGCACCGACTCCTCCGACCTACAGCAGATCCTGAGCCTCCT
CGAACCCACCAAGGACCTGTTGTTAACTAGCTCGTACCTGTCCAACTCCTCTTTCACGGG
GAAGCAAACCAGTTTCCTGGTCACGCAGTATTTGAATGCCACTGGCAGTCGCTGGTGCAG
CTGGAGCTTGTCGCAGGCGGGGCTTCTGACCTCCTCTGTGCCGTCTCACCTCCTCCGGCT
CTACCAGCTGCTGCTCTTCACTCTGCCCGGGACCCCAGTGTTCAGCTACGGAGACGAGAT
TGGCCTGGAGGAAGCGGTCCTCCCTGGACAGCCTGTGAAGGCCCCGGTCATGCCATGGGA
TGAATCCAGCCTTCCCAGCACCTTAGGACCTGTAAACAGCAGCAGCGTGACTGTGAAGGG
CCAGAGCGGAGACCCTGGCTCCCTCCTCTCCCTGTTCCGCTGGCTGAGTGATCTGCGGGG
GAAGGAGCGCTCCCTGCTGCACGGAGACTTCCACGCGCTCTCCTCGGGGCCCGACCTCTT
CTCCTACATCCGCCAGTGGGACCAGAACGAGCGCTTCCTGATAGTGCTCAACTTCGGGGA
TGTGGGCCAACCTGCCAGGCTGGGGGCCTCCAGCCTGCCCTCCAGTGTGGATCTGCTGCT
CAGCACCCAGCCAGGCCGCAAGGAGGGCACCCCTCTCCAGCTGGAGCACCTGAACCTGGA
GCCCTATGAGGGGCTGCTGCTCCGCTTCCCCTATGTGGCCTGACCCCGACCCCCTGACCT
CCCCCACCCCCAGGCCCTTTGGGTTCTGGTTTCTCTCTTCTTTTCTTTCTTTCTTTTTTT
TTTGACTGTTACAGATGAACTCCCAAATAGGGCATTTTCTGCTTCAAATAAATGTCAGCC
CCCTGCCTGTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5EA54_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5EA54_BOVIN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1494-1612, - strand, RNAz p=0.736796
               

               
               1653-1890, - strand, RNAz p=0.949941

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1494-1612, - strand, RNAz p=0.736796
               

               
               1653-1890, - strand, RNAz p=0.949941

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               137-688, gnl|bosTau2|chr29 (34612672-34613227)
               

               
               137-688, gnl|Hg17|chr11 (62404949-62405494)
               

               
               137-688, gnl|Mm7|chr19 (8394029-8393505)
               


               
               691-864, gnl|bosTau2|chr29 (34613615-34613788)
               

               
               691-864, gnl|Hg17|chr11 (62405942-62406115)
               

               
               691-864, gnl|Mm7|chr19 (8393064-8392891)
               


               
               1084-1266, gnl|bosTau2|chr29 (34616455-34616637)
               

               
               1084-1266, gnl|Hg17|chr11 (62409222-62409404)
               

               
               1084-1266, gnl|Mm7|chr19 (8389575-8389393)
               


               
               1269-1411, gnl|bosTau2|chr29 (34616749-34616891)
               

               
               1269-1411, gnl|Hg17|chr11 (62409514-62409656)
               

               
               1269-1411, gnl|Mm7|chr19 (8389306-8389167)
               


               
               1494-1989, gnl|bosTau2|chr29 (34618357-34618860)
               

               
               1494-1989, gnl|Hg17|chr11 (62412376-62412903)
               

               
               1494-1989, gnl|Mm7|chr19 (8388261-8387733)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               137-688, gnl|bosTau2|chr29 (34612672-34613227)
               

               
               137-688, gnl|Hg17|chr11 (62404949-62405494)
               

               
               137-688, gnl|Mm7|chr19 (8394029-8393505)
               


               
               691-864, gnl|bosTau2|chr29 (34613615-34613788)
               

               
               691-864, gnl|Hg17|chr11 (62405942-62406115)
               

               
               691-864, gnl|Mm7|chr19 (8393064-8392891)
               


               
               1084-1266, gnl|bosTau2|chr29 (34616455-34616637)
               

               
               1084-1266, gnl|Hg17|chr11 (62409222-62409404)
               

               
               1084-1266, gnl|Mm7|chr19 (8389575-8389393)
               


               
               1269-1411, gnl|bosTau2|chr29 (34616749-34616891)
               

               
               1269-1411, gnl|Hg17|chr11 (62409514-62409656)
               

               
               1269-1411, gnl|Mm7|chr19 (8389306-8389167)
               


               
               1494-1989, gnl|bosTau2|chr29 (34618357-34618860)
               

               
               1494-1989, gnl|Hg17|chr11 (62412376-62412903)
               

               
               1494-1989, gnl|Mm7|chr19 (8388261-8387733)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               pla (0.401016)
               

               
               nep (0.36785)
               

               
               ton (0.351)
               

               
               nje (0.33184)
               

               
               jej (0.296765)
               

               
               eje (0.296501)
               

               
               hyp (0.285673)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.401016)
               

               
               nep (0.36785)
               

               
               ton (0.351)
               

               
               nje (0.33184)
               

               
               jej (0.296765)
               

               
               eje (0.296501)
               

               
               hyp (0.285673)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)

	1494-1612, - strand, RNAz p=0.736796
	1653-1890, - strand, RNAz p=0.949941

	137-688, gnl\|bosTau2\|chr29 (34612672-34613227)
	137-688, gnl\|Hg17\|chr11 (62404949-62405494)
	137-688, gnl\|Mm7\|chr19 (8394029-8393505)

	691-864, gnl\|bosTau2\|chr29 (34613615-34613788)
	691-864, gnl\|Hg17\|chr11 (62405942-62406115)
	691-864, gnl\|Mm7\|chr19 (8393064-8392891)

	1084-1266, gnl\|bosTau2\|chr29 (34616455-34616637)
	1084-1266, gnl\|Hg17\|chr11 (62409222-62409404)
	1084-1266, gnl\|Mm7\|chr19 (8389575-8389393)

	1269-1411, gnl\|bosTau2\|chr29 (34616749-34616891)
	1269-1411, gnl\|Hg17\|chr11 (62409514-62409656)
	1269-1411, gnl\|Mm7\|chr19 (8389306-8389167)

	1494-1989, gnl\|bosTau2\|chr29 (34618357-34618860)
	1494-1989, gnl\|Hg17\|chr11 (62412376-62412903)
	1494-1989, gnl\|Mm7\|chr19 (8388261-8387733)

	pla (0.401016)
	nep (0.36785)
	ton (0.351)
	nje (0.33184)
	jej (0.296765)
	eje (0.296501)
	hyp (0.285673)
	mas (0.210305)
	fli (0.202881)
	ill (0.175593)
	duo (0.172801)
	eye (0.170503)
	nmm (0.132802)
	ese (0.126502)