Non-Coding RNA Search

Ss1.1-Utr1-UTR010068A06.5

Sequence:


               
               CTTCCGGAGCGGAGGTCACCATGGCGGCGGCCTTGGCTCGGCTCGGACTGCGCGCTGTCA
AGCAGGTTCGGGTTCAATTCTGCCCCTTCGAGAAGAATGTGGAGTCTACGAGGACCTTCC
TGCAGGCGGTGAGCAGCGAGAAGGTCCGCTGCACCAACCTCAACTGCTCGGTGATTGCGG
ACGTGAGGCACGACGGCTCCGAGCCCTGCGTGGACGTGCTGTTCGGAGATGGGCATCGCC
TGATTATGCGCGGCGCTCACCTCACCGCCCAGGAGATGCTCACTGCCTTCGCCTCCCACA
TCCAGGCCAGGGGCGCGGCGGGGAGCGGGGACAAGCCCAGCGCCAGTACCGGGCGCTGAC
AGCGCGGAAGAGACCACCAACAAGCAGATTTTAATCTGAGACTGCTAAGGACATTTATCT
AAGAAGAACTTAATTACTCAAATCACTATCTGAAGGGCCGCGGAGCACCGAAAAAATTAA
GGCCTGTGACTACAAATCCAACCAGTGTTTCTGGGTCGAGAGAAGATGGGGAGGGGCCTG
GACAAACTTGAATTTATTTTGCTTTCTTAGCTTTATCACTGTGTAACCCTTTTGAGTTTG
GCTTTTCCCACCACTGCTCAAGGCACCTCTTATTTCCGTTGCTGTTTTCTCAGTCCTCGT
CTTTCCATCTTAGTAGCAGCTGCCACGCTAATTCACTCCGTTGTGGAACTTCTTTTCCTC
TCGGGTCCTTTTTCTTCTCTTAACCATAAAAGTGTACTACTCTCTTTTTTCTCTTTATTT
TTAGAGCATCTCATCTTCTCTCATAACCTCTTGGGTTAAACTGCATTTCTGTTTGGCTCT
AATCTCAAATTGCTCCTAATTCCAGCAACATGCTTGGTCCAAAAAGGAACTGATAATCTT
ACATACTTTGTACTGTTGACCCTTGAACAACGGTGGTTTGAACTGCACAAGTCCTCTTAT
AGGCCTGTTTTTACAATAAACATGCACTACAGTACTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCCGGAGCGGAGGTCACCATGGCGGCGGCCTTGGCTCGGCTCGGACTGCGCGCTGTCA
AGCAGGTTCGGGTTCAATTCTGCCCCTTCGAGAAGAATGTGGAGTCTACGAGGACCTTCC
TGCAGGCGGTGAGCAGCGAGAAGGTCCGCTGCACCAACCTCAACTGCTCGGTGATTGCGG
ACGTGAGGCACGACGGCTCCGAGCCCTGCGTGGACGTGCTGTTCGGAGATGGGCATCGCC
TGATTATGCGCGGCGCTCACCTCACCGCCCAGGAGATGCTCACTGCCTTCGCCTCCCACA
TCCAGGCCAGGGGCGCGGCGGGGAGCGGGGACAAGCCCAGCGCCAGTACCGGGCGCTGAC
AGCGCGGAAGAGACCACCAACAAGCAGATTTTAATCTGAGACTGCTAAGGACATTTATCT
AAGAAGAACTTAATTACTCAAATCACTATCTGAAGGGCCGCGGAGCACCGAAAAAATTAA
GGCCTGTGACTACAAATCCAACCAGTGTTTCTGGGTCGAGAGAAGATGGGGAGGGGCCTG
GACAAACTTGAATTTATTTTGCTTTCTTAGCTTTATCACTGTGTAACCCTTTTGAGTTTG
GCTTTTCCCACCACTGCTCAAGGCACCTCTTATTTCCGTTGCTGTTTTCTCAGTCCTCGT
CTTTCCATCTTAGTAGCAGCTGCCACGCTAATTCACTCCGTTGTGGAACTTCTTTTCCTC
TCGGGTCCTTTTTCTTCTCTTAACCATAAAAGTGTACTACTCTCTTTTTTCTCTTTATTT
TTAGAGCATCTCATCTTCTCTCATAACCTCTTGGGTTAAACTGCATTTCTGTTTGGCTCT
AATCTCAAATTGCTCCTAATTCCAGCAACATGCTTGGTCCAAAAAGGAACTGATAATCTT
ACATACTTTGTACTGTTGACCCTTGAACAACGGTGGTTTGAACTGCACAAGTCCTCTTAT
AGGCCTGTTTTTACAATAAACATGCACTACAGTACTAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q96EL3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96EL3_HUMAN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-113, gnl|bosTau2|chr11 (7809362-7809474)
               

               
               1-113, gnl|Hg17|chr2 (74611462-74611350)
               

               
               1-113, gnl|Mm7|chr6 (83134526-83134638)
               


               
               225-851, gnl|bosTau2|chr11 (7809771-7810400)
               

               
               225-851, gnl|Hg17|chr2 (74611035-74609333)
               

               
               225-851, gnl|Mm7|chr6 (83134955-83135662)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-113, gnl|bosTau2|chr11 (7809362-7809474)
               

               
               1-113, gnl|Hg17|chr2 (74611462-74611350)
               

               
               1-113, gnl|Mm7|chr6 (83134526-83134638)
               


               
               225-851, gnl|bosTau2|chr11 (7809771-7810400)
               

               
               225-851, gnl|Hg17|chr2 (74611035-74609333)
               

               
               225-851, gnl|Mm7|chr6 (83134955-83135662)

Expressed library(ies): 29 entry(ies)

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Expressed library(ies): 29 entry(ies)

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               nms (0.855432)
               

               
               amn (0.417711)
               

               
               sin (0.349895)
               

               
               med (0.348756)
               

               
               nje (0.33184)
               

               
               isp (0.300752)
               

               
               eje (0.296501)
               

               
               ste (0.270416)
               

               
               eep (0.245128)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 29 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.855432)
               

               
               amn (0.417711)
               

               
               sin (0.349895)
               

               
               med (0.348756)
               

               
               nje (0.33184)
               

               
               isp (0.300752)
               

               
               eje (0.296501)
               

               
               ste (0.270416)
               

               
               eep (0.245128)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	1-113, gnl\|bosTau2\|chr11 (7809362-7809474)
	1-113, gnl\|Hg17\|chr2 (74611462-74611350)
	1-113, gnl\|Mm7\|chr6 (83134526-83134638)

	225-851, gnl\|bosTau2\|chr11 (7809771-7810400)
	225-851, gnl\|Hg17\|chr2 (74611035-74609333)
	225-851, gnl\|Mm7\|chr6 (83134955-83135662)

	nms (0.855432)
	amn (0.417711)
	sin (0.349895)
	med (0.348756)
	nje (0.33184)
	isp (0.300752)
	eje (0.296501)
	ste (0.270416)
	eep (0.245128)
	tes (0.207814)
	fli (0.202881)
	fty (0.17584)
	ton (0.1755)
	fbs (0.175346)
	duo (0.172801)
	cut (0.169924)
	nco (0.161734)
	eli (0.151814)
	fat (0.147427)
	spl (0.143184)
	csk (0.140746)
	ssp (0.13552)
	ova (0.129132)
	eru (0.120048)
	clu (0.119646)
	pgl (0.118483)
	ecc (0.115035)
	cty (0.10408)
	ldo (0.0970026)