Ss1.1-Utr1-UTR010068B03.5.62
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGTGAAGAAAGAGCTTCCTGCAATGTGAGAATTGAGCAAGGCTGAAAGGCAGAGACTTT CACGTTACTGGGGAGGAGGAGAAATGAGCCCTTGAGTTTATTTCTTGGCGTAGCGATTGA CAAGGGCACAATGGTGAAAAAGAGGCTGTCGTCATCCAGCGACACGACGTGGAGGTCTGA GGTTCCGGGCGGCCCGAGCAAGGTGGGCACCGAGGCCCCGCACAGCGCCCCTGACAGCCC CGGCTCGGTGTTTCTCAGCTCAGAGGCTGAGAACGGTGTGGAGGAGAAAAAGAAGGTCTG CAGGTCGCCAACAGCCCTGTCCCCTGCCCCGTCCAGCGAGGCCGAGTCTCCAGACCAGAA GAGAATCATTTCCCTGCGGTCCAAATCCAGCTTTGACGGTGCCTCTTTAGCAAGCGAGAA GAACGACTGTAAGACAGAAAGCAAGAATGACGCGAAGATTGAAAGGAAAAAGTCCTCCTC ATCCAGCCAGGACAAAGCCAACATGCATTTCCACAAGCTGTTTCTGGATGTCCCCACGGA GGAACCCCTGAAGCAAAGTTTTACCTGTGCCCTGCAAAAAGAAATATTATACCAGGGGAA GCTCTTTGTATCAGACAACTGGATTTGTTTTCATTCCAAGGTCTTTGGAAAAGACACTAA GATCTCGATTCCAGCTTTCTCGGTAACCCTGATAAAGAAAACCAAAACTGCCCTTCTGGT GCCAAATGCCCTGATTATAGCGACGGTCACAGACAGGTACATATTTGTCTCCTTACTCTC CAGAGATTCAACTTACAAACTGCTAAAATCTGTGTGTGGACACTTAGAAAATGCAAGCAT TGGCAACAGCCCCAATCCGTCTTCCCTTGAAAACAGTTTCCGGGCAGACCGCCCTTCATC TCTGCCTCTGGATTTCAACGATGAATTCTCGGATCTGGATGGAGTGGTTCGGCAAAGAAG GCAGGACATGGAGGGATACAGCAGTTCTGGATCTCAGACTCCTGAATCTGAGAACTCTCG AGATTTCCATGTGACAGAATCCCAGACAGTTCTCAACGTGTCCAAGGGAGAAGCAAAACC AACTCGGACAGATGCCCTCGTGAACAGAGTGCCTGAAGGCAAAGCCAAGAGTCTTCCCAC ACATGGTCAGTCGGAACTCAGTGGAATTGTACACAGAGTAAAGTCTCAGAAATGTCCAAC TCTCCACCAGATTCTTATATTCTATGCAATTGTTGTCTGCGCACTAATCATCTCGACCTT CTACATGAGATACAGAATTAATACGCTGGAGGAACAGCTGGGGTCACTCACCTCCACTGT GGACACCCACCAGCCCGAACAGCCAGCCCCCTCCGGCCTGGGATCACAAGTGCAGTTAAA CGTGGAAGTCCTCTGCCAAGAGCTTACAGCCAACATAATGAGATTGGAAAAGATACAAAA CAACTTACAAAAGCTGCTCGAGAATGGTGACTGACCGCCCAGATGGCTTGGGCCAATGGA ATACCTCGCACTTTCCCTTTGAAGTAGGTGCTCCCCGAGGCGTTCTGGTGGAGCGCCCCC TTCTGGCCAGAAGAGTGAGCAGACGGGCGTCCCCAGCCTCGCTTGCCCCTGGTGGTCTCC GGCTCAGCAAAACGGAAAGGGAATAATTTTGGTTCCCGTGCAATAAAAGTGGACCTTCAC TCTCTGAGGAAGTTTTCAATGCTGCTGCCTGAAGAAAACAGACCCATCTCTGGAGGTCTC AGGAAGGGCCCAGTGGACATCCTTGGATGGTTGTGATTTAGCAGGTTCATGGGACTGTCA GCAAATACACTCCACTCCAGGCCTTTTGAGCCCTCTCTGCCCTCCTTTGCTCTCCTGTAC ACCCCTCTTAACCGACCTGCAAACTAAGGGATGGATAGATCATGTGCCAACAAACTTGAT TGATGGAGTTCTTTAAAGAATTAGCCATGGCTCTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGTGAAGAAAGAGCTTCCTGCAATGTGAGAATTGAGCAAGGCTGAAAGGCAGAGACTTT CACGTTACTGGGGAGGAGGAGAAATGAGCCCTTGAGTTTATTTCTTGGCGTAGCGATTGA CAAGGGCACAATGGTGAAAAAGAGGCTGTCGTCATCCAGCGACACGACGTGGAGGTCTGA GGTTCCGGGCGGCCCGAGCAAGGTGGGCACCGAGGCCCCGCACAGCGCCCCTGACAGCCC CGGCTCGGTGTTTCTCAGCTCAGAGGCTGAGAACGGTGTGGAGGAGAAAAAGAAGGTCTG CAGGTCGCCAACAGCCCTGTCCCCTGCCCCGTCCAGCGAGGCCGAGTCTCCAGACCAGAA GAGAATCATTTCCCTGCGGTCCAAATCCAGCTTTGACGGTGCCTCTTTAGCAAGCGAGAA GAACGACTGTAAGACAGAAAGCAAGAATGACGCGAAGATTGAAAGGAAAAAGTCCTCCTC ATCCAGCCAGGACAAAGCCAACATGCATTTCCACAAGCTGTTTCTGGATGTCCCCACGGA GGAACCCCTGAAGCAAAGTTTTACCTGTGCCCTGCAAAAAGAAATATTATACCAGGGGAA GCTCTTTGTATCAGACAACTGGATTTGTTTTCATTCCAAGGTCTTTGGAAAAGACACTAA GATCTCGATTCCAGCTTTCTCGGTAACCCTGATAAAGAAAACCAAAACTGCCCTTCTGGT GCCAAATGCCCTGATTATAGCGACGGTCACAGACAGGTACATATTTGTCTCCTTACTCTC CAGAGATTCAACTTACAAACTGCTAAAATCTGTGTGTGGACACTTAGAAAATGCAAGCAT TGGCAACAGCCCCAATCCGTCTTCCCTTGAAAACAGTTTCCGGGCAGACCGCCCTTCATC TCTGCCTCTGGATTTCAACGATGAATTCTCGGATCTGGATGGAGTGGTTCGGCAAAGAAG GCAGGACATGGAGGGATACAGCAGTTCTGGATCTCAGACTCCTGAATCTGAGAACTCTCG AGATTTCCATGTGACAGAATCCCAGACAGTTCTCAACGTGTCCAAGGGAGAAGCAAAACC AACTCGGACAGATGCCCTCGTGAACAGAGTGCCTGAAGGCAAAGCCAAGAGTCTTCCCAC ACATGGTCAGTCGGAACTCAGTGGAATTGTACACAGAGTAAAGTCTCAGAAATGTCCAAC TCTCCACCAGATTCTTATATTCTATGCAATTGTTGTCTGCGCACTAATCATCTCGACCTT CTACATGAGATACAGAATTAATACGCTGGAGGAACAGCTGGGGTCACTCACCTCCACTGT GGACACCCACCAGCCCGAACAGCCAGCCCCCTCCGGCCTGGGATCACAAGTGCAGTTAAA CGTGGAAGTCCTCTGCCAAGAGCTTACAGCCAACATAATGAGATTGGAAAAGATACAAAA CAACTTACAAAAGCTGCTCGAGAATGGTGACTGACCGCCCAGATGGCTTGGGCCAATGGA ATACCTCGCACTTTCCCTTTGAAGTAGGTGCTCCCCGAGGCGTTCTGGTGGAGCGCCCCC TTCTGGCCAGAAGAGTGAGCAGACGGGCGTCCCCAGCCTCGCTTGCCCCTGGTGGTCTCC GGCTCAGCAAAACGGAAAGGGAATAATTTTGGTTCCCGTGCAATAAAAGTGGACCTTCAC TCTCTGAGGAAGTTTTCAATGCTGCTGCCTGAAGAAAACAGACCCATCTCTGGAGGTCTC AGGAAGGGCCCAGTGGACATCCTTGGATGGTTGTGATTTAGCAGGTTCATGGGACTGTCA GCAAATACACTCCACTCCAGGCCTTTTGAGCCCTCTCTGCCCTCCTTTGCTCTCCTGTAC ACCCCTCTTAACCGACCTGCAAACTAAGGGATGGATAGATCATGTGCCAACAAACTTGAT TGATGGAGTTCTTTAAAGAATTAGCCATGGCTCTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 558-661, + strand, RNAz p=0.590834 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 558-661, + strand, RNAz p=0.590834 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 1-258, gnl|bosTau2|chr7 (23253360-23253617) | |
| 1-258, gnl|canFam2|chr11 (18679817-18680547) | |
| 1-258, gnl|dasNov1|scaffold_28371 (1479-764) | |
| 1-258, gnl|echTel1|scaffold_290460 (40170-40963) | |
| 1-258, gnl|hg17|chr5 (125734567-125735301) | |
| 1-258, gnl|Hg17|chr5 (125734904-125735158) | |
| 1-258, gnl|loxAfr1|scaffold_9036 (48302-49031) | |
| 1-258, gnl|mm7|chr18 (56781612-56782336) | |
| 1-258, gnl|Mm7|chr18 (56781953-56782197) | |
| 1-258, gnl|monDom2|scaffold_60 (216341-215537) | |
| 1-258, gnl|oryCun1|scaffold_94153 (4639-3944) | |
| 1-258, gnl|panTro1|chr4 (132061021-132061755) | |
| 1-258, gnl|rheMac2|chr6 (122759335-122760066) | |
| 1-258, gnl|rn3|chr18 (52216720-52217451) | |
| 370-491, gnl|bosTau2|chr7 (23492812-23492691) | |
| 370-491, gnl|canFam2|chr11 (18766051-18766179) | |
| 370-491, gnl|dasNov1|scaffold_71210 (9700-9572) | |
| 370-491, gnl|echTel1|scaffold_324337 (7430-7302) | |
| 370-491, gnl|galGal2|chrUn (3081518-3081414) | |
| 370-491, gnl|hg17|chr5 (125833255-125833383) | |
| 370-491, gnl|Hg17|chr5 (125833259-125833380) | |
| 370-491, gnl|loxAfr1|scaffold_3696 (122169-122038) | |
| 370-491, gnl|mm7|chr18 (56855629-56855757) | |
| 370-491, gnl|Mm7|chr18 (56855633-56855754) | |
| 370-491, gnl|monDom2|scaffold_60 (164310-164179) | |
| 370-491, gnl|oryCun1|scaffold_211207 (135774-135903) | |
| 370-491, gnl|panTro1|chr4 (132159878-132160006) | |
| 370-491, gnl|rheMac2|chr6 (122852234-122852362) | |
| 370-491, gnl|rn3|chr18 (52288551-52288679) | |
| 558-661, gnl|bosTau2|chr7 (23489227-23489124) | |
| 558-661, gnl|Hg17|chr5 (125836856-125836959) | |
| 558-661, gnl|Mm7|chr18 (56860472-56860575) | |
| 1021-1147, gnl|bosTau2|chr7 (23479593-23479467) | |
| 1021-1147, gnl|canFam2|chr11 (18780475-18780611) | |
| 1021-1147, gnl|dasNov1|scaffold_4791 (43191-43327) | |
| 1021-1147, gnl|echTel1|scaffold_312897 (54225-54088) | |
| 1021-1147, gnl|galGal2|chrUn (3072606-3072470) | |
| 1021-1147, gnl|hg17|chr5 (125847987-125848123) | |
| 1021-1147, gnl|Hg17|chr5 (125847991-125848117) | |
| 1021-1147, gnl|loxAfr1|scaffold_3696 (105224-105088) | |
| 1021-1147, gnl|mm7|chr18 (56871232-56871368) | |
| 1021-1147, gnl|Mm7|chr18 (56871236-56871362) | |
| 1021-1147, gnl|monDom2|scaffold_60 (142669-142533) | |
| 1021-1147, gnl|oryCun1|scaffold_170866 (24305-24169) | |
| 1021-1147, gnl|panTro1|chr4 (132174449-132174585) | |
| 1021-1147, gnl|rheMac2|chr6 (122867425-122867561) | |
| 1021-1147, gnl|rn3|chr18 (52302918-52303054) | |
| 1234-1354, gnl|bosTau2|chr7 (23476220-23476099) | |
| 1234-1354, gnl|Hg17|chr5 (125850464-125850585) | |
| 1234-1354, gnl|Mm7|chr18 (56873518-56873636) | |
| 1430-1956, gnl|bosTau2|chr7 (23467221-23466720) | |
| 1430-1956, gnl|Hg17|chr5 (125856503-125857003) | |
| 1430-1956, gnl|Mm7|chr18 (56884208-56884691) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-258, gnl|bosTau2|chr7 (23253360-23253617) | |
| 1-258, gnl|canFam2|chr11 (18679817-18680547) | |
| 1-258, gnl|dasNov1|scaffold_28371 (1479-764) | |
| 1-258, gnl|echTel1|scaffold_290460 (40170-40963) | |
| 1-258, gnl|hg17|chr5 (125734567-125735301) | |
| 1-258, gnl|Hg17|chr5 (125734904-125735158) | |
| 1-258, gnl|loxAfr1|scaffold_9036 (48302-49031) | |
| 1-258, gnl|mm7|chr18 (56781612-56782336) | |
| 1-258, gnl|Mm7|chr18 (56781953-56782197) | |
| 1-258, gnl|monDom2|scaffold_60 (216341-215537) | |
| 1-258, gnl|oryCun1|scaffold_94153 (4639-3944) | |
| 1-258, gnl|panTro1|chr4 (132061021-132061755) | |
| 1-258, gnl|rheMac2|chr6 (122759335-122760066) | |
| 1-258, gnl|rn3|chr18 (52216720-52217451) | |
| 370-491, gnl|bosTau2|chr7 (23492812-23492691) | |
| 370-491, gnl|canFam2|chr11 (18766051-18766179) | |
| 370-491, gnl|dasNov1|scaffold_71210 (9700-9572) | |
| 370-491, gnl|echTel1|scaffold_324337 (7430-7302) | |
| 370-491, gnl|galGal2|chrUn (3081518-3081414) | |
| 370-491, gnl|hg17|chr5 (125833255-125833383) | |
| 370-491, gnl|Hg17|chr5 (125833259-125833380) | |
| 370-491, gnl|loxAfr1|scaffold_3696 (122169-122038) | |
| 370-491, gnl|mm7|chr18 (56855629-56855757) | |
| 370-491, gnl|Mm7|chr18 (56855633-56855754) | |
| 370-491, gnl|monDom2|scaffold_60 (164310-164179) | |
| 370-491, gnl|oryCun1|scaffold_211207 (135774-135903) | |
| 370-491, gnl|panTro1|chr4 (132159878-132160006) | |
| 370-491, gnl|rheMac2|chr6 (122852234-122852362) | |
| 370-491, gnl|rn3|chr18 (52288551-52288679) | |
| 558-661, gnl|bosTau2|chr7 (23489227-23489124) | |
| 558-661, gnl|Hg17|chr5 (125836856-125836959) | |
| 558-661, gnl|Mm7|chr18 (56860472-56860575) | |
| 1021-1147, gnl|bosTau2|chr7 (23479593-23479467) | |
| 1021-1147, gnl|canFam2|chr11 (18780475-18780611) | |
| 1021-1147, gnl|dasNov1|scaffold_4791 (43191-43327) | |
| 1021-1147, gnl|echTel1|scaffold_312897 (54225-54088) | |
| 1021-1147, gnl|galGal2|chrUn (3072606-3072470) | |
| 1021-1147, gnl|hg17|chr5 (125847987-125848123) | |
| 1021-1147, gnl|Hg17|chr5 (125847991-125848117) | |
| 1021-1147, gnl|loxAfr1|scaffold_3696 (105224-105088) | |
| 1021-1147, gnl|mm7|chr18 (56871232-56871368) | |
| 1021-1147, gnl|Mm7|chr18 (56871236-56871362) | |
| 1021-1147, gnl|monDom2|scaffold_60 (142669-142533) | |
| 1021-1147, gnl|oryCun1|scaffold_170866 (24305-24169) | |
| 1021-1147, gnl|panTro1|chr4 (132174449-132174585) | |
| 1021-1147, gnl|rheMac2|chr6 (122867425-122867561) | |
| 1021-1147, gnl|rn3|chr18 (52302918-52303054) | |
| 1234-1354, gnl|bosTau2|chr7 (23476220-23476099) | |
| 1234-1354, gnl|Hg17|chr5 (125850464-125850585) | |
| 1234-1354, gnl|Mm7|chr18 (56873518-56873636) | |
| 1430-1956, gnl|bosTau2|chr7 (23467221-23466720) | |
| 1430-1956, gnl|Hg17|chr5 (125856503-125857003) | |
| 1430-1956, gnl|Mm7|chr18 (56884208-56884691) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| col (0.390016) | |
| fbs (0.350693) | |
| hea (0.204499) | |
| jej (0.197844) | |
| ill (0.175593) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| hlv (0.139256) | |
| ute (0.132784) | |
| ebs (0.118301) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.390016) | |
| fbs (0.350693) | |
| hea (0.204499) | |
| jej (0.197844) | |
| ill (0.175593) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| hlv (0.139256) | |
| ute (0.132784) | |
| ebs (0.118301) |