Non-Coding RNA Search

Ss1.1-Utr1-UTR010068G10.5

Sequence:


               
               GAGGATGGCGGCGGCGGCGGCTGCGGCGGCGGCGGCGGCGGGTGCCGTAACCGCAGCCCG
GAGAGGGTCAGCACAGGTGCTCAGACGCCAAAGAGCCCGCCGCCCGTGCGAGGTGTAGAC
GGGGCACTGCCTGCAGAGCAGGTCCTGCCAGCCTCGCTAGAGAGGATGCCCCCGTGTCCG
TGATGGGCTGTGGGACAAGCAAGGTCCTTCCCGAGCCGCCCAAGGATGTCCAGCTGGATC
TGGTCAAGAAGGTGGAGCCCTTCAGTGGCACTAAGAGTGATGTATACAAGCACTTCATCA
CAGAGGTGGAAAGTGTTGGCCCTCTCAAAGCTGGCTTCCCAGCAGGCAGTCAACGTGCCA
ACCCCTGCCCTGGTGCCCCCACTACCGGCCGCACAGAGCCTCCCTCAGAACCACCACGCA
GAGCCAGGGTGGCTAAGTACAGGGCCAAATTCGACCCACGCGTGACGGCCAAGTATGACA
TCAAAGCTCTGATTGGCCGAGGCAGCTTCAGCCGGGTGGTACGTGTGGAGCATCGGGCAA
CCCGGCAGCCATATGCCATTAAGATGATTGAAACCAAGTACCGGGAGGGGCGGGAGGTGT
GTGAGTCAGAGCTCCGTGTGTTGCGCCGGGTGCGTCACGCCAACATCATCCAGCTGGTGG
AGGTGTTTGAGACACAGGAGCGCGTGTACATGGTGATGGAGCTGGCCACTGGTGGAGAGC
TCTTTGACCGCATCATCGCCAAGGGTTCTTTCACTGAGCGTGACGCCACTCGGGTGCTGC
AGATGGTGCTGGATGGCGTCCGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGATGGCGGCGGCGGCGGCTGCGGCGGCGGCGGCGGCGGGTGCCGTAACCGCAGCCCG
GAGAGGGTCAGCACAGGTGCTCAGACGCCAAAGAGCCCGCCGCCCGTGCGAGGTGTAGAC
GGGGCACTGCCTGCAGAGCAGGTCCTGCCAGCCTCGCTAGAGAGGATGCCCCCGTGTCCG
TGATGGGCTGTGGGACAAGCAAGGTCCTTCCCGAGCCGCCCAAGGATGTCCAGCTGGATC
TGGTCAAGAAGGTGGAGCCCTTCAGTGGCACTAAGAGTGATGTATACAAGCACTTCATCA
CAGAGGTGGAAAGTGTTGGCCCTCTCAAAGCTGGCTTCCCAGCAGGCAGTCAACGTGCCA
ACCCCTGCCCTGGTGCCCCCACTACCGGCCGCACAGAGCCTCCCTCAGAACCACCACGCA
GAGCCAGGGTGGCTAAGTACAGGGCCAAATTCGACCCACGCGTGACGGCCAAGTATGACA
TCAAAGCTCTGATTGGCCGAGGCAGCTTCAGCCGGGTGGTACGTGTGGAGCATCGGGCAA
CCCGGCAGCCATATGCCATTAAGATGATTGAAACCAAGTACCGGGAGGGGCGGGAGGTGT
GTGAGTCAGAGCTCCGTGTGTTGCGCCGGGTGCGTCACGCCAACATCATCCAGCTGGTGG
AGGTGTTTGAGACACAGGAGCGCGTGTACATGGTGATGGAGCTGGCCACTGGTGGAGAGC
TCTTTGACCGCATCATCGCCAAGGGTTCTTTCACTGAGCGTGACGCCACTCGGGTGCTGC
AGATGGTGCTGGATGGCGTCCGGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55644675|ref|XP_523507.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55644675|ref|XP_523507.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               111-802, gnl|bosTau2|chr18 (14959325-14958634)
               

               
               111-802, gnl|Hg17|chr16 (66500082-66500773)
               

               
               111-802, gnl|Mm7|chr8 (104511473-104512164)
               


               
               474-766, gnl|bosTau2|chr14 (48598231-48598521)
               

               
               474-766, gnl|Hg17|chr8 (87145975-87145683)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               111-802, gnl|bosTau2|chr18 (14959325-14958634)
               

               
               111-802, gnl|Hg17|chr16 (66500082-66500773)
               

               
               111-802, gnl|Mm7|chr8 (104511473-104512164)
               


               
               474-766, gnl|bosTau2|chr14 (48598231-48598521)
               

               
               474-766, gnl|Hg17|chr8 (87145975-87145683)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	111-802, gnl\|bosTau2\|chr18 (14959325-14958634)
	111-802, gnl\|Hg17\|chr16 (66500082-66500773)
	111-802, gnl\|Mm7\|chr8 (104511473-104512164)

	474-766, gnl\|bosTau2\|chr14 (48598231-48598521)
	474-766, gnl\|Hg17\|chr8 (87145975-87145683)