Non-Coding RNA Search

Ss1.1-Utr1-UTR010069A02.5

Sequence:


               
               TGCGGCGGCTCGTGACGACGTCGGGTCGCCGGTGCGCGGGGCTGGGCCGGACGGCGACTC
CTGTGCGGGGCGCTGGCCTCTGTGGTTCATGCACAGAGAAGAGGCGAGCTCGCCAGCCGG
CCGGGCGCCCGCGGGGCGGGGCCTCCCTCCGTCCGCTGCCCAGCGCTCCTGGCCGGCGTG
GGGAGGCCGCCGGGACGCCTTGCGTACGTCCGTGCCGCACATCCCGACGCGCTACGTCGC
CGGCGTCGCCTTTTGCGCGTCATGACTTCCGGGCACCGAGGTCGCCATCTTCCTCGCGCG
GAAGCGGCGCCGCTGGGTGGGAGCTCGGAGGCGGGAGTCGCGGACGGTGCGGCTACCGCA
ATGCCGTCGTCGCCGTTGCGGGTGGCGGTGGTGTGCTCGAGCAACCAGAACCGGAGCATG
GAGGCGCACAACATCCTCAGCAAACGAGGGTTCAGCGTACGGTCCTTCGGGACAGGGACT
CACGTGAAGCTCCCGGGACCAGCGCCCGACAAGCCGAACGTCTACGATTTCAGAACCACG
TACGACCAGATGTACAACGACCTCCTCAGGAAGGACAAAGAACTCTACACGCAGAATGGC
ATTTTGCACATGTTGGACAGAAACAAGAGAATCAAGCCCCGGCCAGAAAGGTTCCAGAAC
TGCAAAGACCTGTTTGACCTGATCCTTACCTGTGAAGAGCGGGTGTACGACCAGGTGGTG
GAAGATCTGAATTCCAGGGAGCAGGAGACCTGCCAGCCCGTGCACGTGATCAACGTGGAC
ATCCAGGACAACCACGAGGAGGCCACGCTGGGGGCCTTCCTCATCTGTGAGCTCTGCCAG
TGCATTCAGCACACGGAGGACATGGAGAACGAGATCGACGAGCTGCTGCAGGAGTTCGAG
GAGAAGAGCGGCCGGGCCTTCCTCCACACAGTCTGCTTCTACTGAGCCCGCGCCTGCCGC
CCCCACCGCCCGGAGCCGCCCCTGGACTGCCCTCCGCTCCTCCGCTGTCCTCTGGCCTTG
TCTCTCCCTCGAGTGCCGCTGGCGGACGGGGGCGGTTCCCTCACAAACTGTGCCCGTGAA
ACGAGAAGATAGACACAAATGCCAGATGCAAAACAATCAGGTTTCTTCTGTCCTGCTCTT
ACTCCTAAGTGGGATGTTGATTATCGAGTTTTTGTCTTTAACCAAAAAAGAGAAAAACGG
TTCATCGCACATCCCCCCGAATGCCTGCCGCTCACGGACCGTCCCTCACTGGCTGGAATG
TGCAAATCCATGAATAAAGCAACAGGCTGGACTTGGGGGAGAGAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCGGCGGCTCGTGACGACGTCGGGTCGCCGGTGCGCGGGGCTGGGCCGGACGGCGACTC
CTGTGCGGGGCGCTGGCCTCTGTGGTTCATGCACAGAGAAGAGGCGAGCTCGCCAGCCGG
CCGGGCGCCCGCGGGGCGGGGCCTCCCTCCGTCCGCTGCCCAGCGCTCCTGGCCGGCGTG
GGGAGGCCGCCGGGACGCCTTGCGTACGTCCGTGCCGCACATCCCGACGCGCTACGTCGC
CGGCGTCGCCTTTTGCGCGTCATGACTTCCGGGCACCGAGGTCGCCATCTTCCTCGCGCG
GAAGCGGCGCCGCTGGGTGGGAGCTCGGAGGCGGGAGTCGCGGACGGTGCGGCTACCGCA
ATGCCGTCGTCGCCGTTGCGGGTGGCGGTGGTGTGCTCGAGCAACCAGAACCGGAGCATG
GAGGCGCACAACATCCTCAGCAAACGAGGGTTCAGCGTACGGTCCTTCGGGACAGGGACT
CACGTGAAGCTCCCGGGACCAGCGCCCGACAAGCCGAACGTCTACGATTTCAGAACCACG
TACGACCAGATGTACAACGACCTCCTCAGGAAGGACAAAGAACTCTACACGCAGAATGGC
ATTTTGCACATGTTGGACAGAAACAAGAGAATCAAGCCCCGGCCAGAAAGGTTCCAGAAC
TGCAAAGACCTGTTTGACCTGATCCTTACCTGTGAAGAGCGGGTGTACGACCAGGTGGTG
GAAGATCTGAATTCCAGGGAGCAGGAGACCTGCCAGCCCGTGCACGTGATCAACGTGGAC
ATCCAGGACAACCACGAGGAGGCCACGCTGGGGGCCTTCCTCATCTGTGAGCTCTGCCAG
TGCATTCAGCACACGGAGGACATGGAGAACGAGATCGACGAGCTGCTGCAGGAGTTCGAG
GAGAAGAGCGGCCGGGCCTTCCTCCACACAGTCTGCTTCTACTGAGCCCGCGCCTGCCGC
CCCCACCGCCCGGAGCCGCCCCTGGACTGCCCTCCGCTCCTCCGCTGTCCTCTGGCCTTG
TCTCTCCCTCGAGTGCCGCTGGCGGACGGGGGCGGTTCCCTCACAAACTGTGCCCGTGAA
ACGAGAAGATAGACACAAATGCCAGATGCAAAACAATCAGGTTTCTTCTGTCCTGCTCTT
ACTCCTAAGTGGGATGTTGATTATCGAGTTTTTGTCTTTAACCAAAAAAGAGAAAAACGG
TTCATCGCACATCCCCCCGAATGCCTGCCGCTCACGGACCGTCCCTCACTGGCTGGAATG
TGCAAATCCATGAATAAAGCAACAGGCTGGACTTGGGGGAGAGAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|27663418|ref|XP_216596.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|27663418|ref|XP_216596.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               668-787, + strand, RNAz p=0.553989

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               668-787, + strand, RNAz p=0.553989

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               351-946, gnl|bosTau2|chr15 (33345860-33346455)
               

               
               351-946, gnl|Hg17|chr11 (4265899-4265304)
               

               
               351-946, gnl|Mm7|chr14 (118383346-118382767)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               351-946, gnl|bosTau2|chr15 (33345860-33346455)
               

               
               351-946, gnl|Hg17|chr11 (4265899-4265304)
               

               
               351-946, gnl|Mm7|chr14 (118383346-118382767)

Expressed library(ies): 23 entry(ies)

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Expressed library(ies): 23 entry(ies)

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               cga (0.558191)
               

               
               elu (0.385356)
               

               
               clu (0.358938)
               

               
               ill (0.351185)
               

               
               fhi (0.339155)
               

               
               cag (0.302389)
               

               
               lnt (0.284616)
               

               
               mas (0.210305)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.558191)
               

               
               elu (0.385356)
               

               
               clu (0.358938)
               

               
               ill (0.351185)
               

               
               fhi (0.339155)
               

               
               cag (0.302389)
               

               
               lnt (0.284616)
               

               
               mas (0.210305)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	351-946, gnl\|bosTau2\|chr15 (33345860-33346455)
	351-946, gnl\|Hg17\|chr11 (4265899-4265304)
	351-946, gnl\|Mm7\|chr14 (118383346-118382767)

	cga (0.558191)
	elu (0.385356)
	clu (0.358938)
	ill (0.351185)
	fhi (0.339155)
	cag (0.302389)
	lnt (0.284616)
	mas (0.210305)
	mcp (0.170648)
	eye (0.170503)
	csp (0.161186)
	cli (0.152812)
	hyp (0.142837)
	pty (0.142714)
	hlv (0.139256)
	pla (0.133672)
	ute (0.132784)
	cov (0.132153)
	eep (0.122564)
	cly (0.120642)
	pgl (0.118483)
	ecc (0.115035)
	eje (0.0988338)