Non-Coding RNA Search

Ss1.1-Utr1-UTR010069E02.5

Sequence:


               
               CCTGCTGCCCCACCACGCGGGCTACGGCTGCCTGGTGCACAAAGCTCCCACCGAAGAGGC
GCATGAACTCGGCCAGGTCGGAGGCGTGGAAATACTCTCCAGGAACTGGGGCACAGGCTT
GCTGTTGTTGGTTGGCGCCAGAGCCCACATCTTGTGCCGTCAAGTTGTACCGCTTGCGGA
TCACGGACGGGGTCACCCCCAGGTGCAGGCCCAGGGTCCCCGTCACCTGTGGCTCAGGGC
GCTGCCTCAGGGTTGATGTGGGGGGAAAGCGGTGCAGCCCCCCCACAAAGTCCACGTGGG
AGGCCAAGGCCTTCGGGAGTCTGTAGGGATGCGGGGACCTTACAGCATGGGTCTCTGCAG
GTCCCCCCACATAGCGATGGAACTCAGCCCCAGAGAGCAGCAGCTCCGCCTGTCGGACAC
TCAGCCAGCAAGTCAGAAAGTCCTGTGTGGTCACCGAGTGACAGTTCCGGGCTCCAGCCG
CCAAAAGCCATTTTTGGACCATGTGGAGTGTCAGTTGCGATGGCCGGACCAGGTCAGCCA
CATCCTCTAGGGCCAGGTACTTTCCGTAGCGAGGAGAGCCAGGGTCCGACACAGCCTGCA
CCAGCTCAGACAGTCTGTCCACGTTCTGCTGTCTCAGGGCAAAGGTGAGACTCAGCTCTT
CCTCAGGGTCCGCACGGCCCAGGGACACCCAGCCTGGGGGCAGCGTCCGCTGCTGGTCAG
GCTCCGGGCTGTAACTGCACTGGCCGGCGACAGAGAGGGCGAGGAGCCCAAGGAGGCAGG
CTCGGGGTCCCATCCGGCCTTTCTGCAGATCTGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGCTGCCCCACCACGCGGGCTACGGCTGCCTGGTGCACAAAGCTCCCACCGAAGAGGC
GCATGAACTCGGCCAGGTCGGAGGCGTGGAAATACTCTCCAGGAACTGGGGCACAGGCTT
GCTGTTGTTGGTTGGCGCCAGAGCCCACATCTTGTGCCGTCAAGTTGTACCGCTTGCGGA
TCACGGACGGGGTCACCCCCAGGTGCAGGCCCAGGGTCCCCGTCACCTGTGGCTCAGGGC
GCTGCCTCAGGGTTGATGTGGGGGGAAAGCGGTGCAGCCCCCCCACAAAGTCCACGTGGG
AGGCCAAGGCCTTCGGGAGTCTGTAGGGATGCGGGGACCTTACAGCATGGGTCTCTGCAG
GTCCCCCCACATAGCGATGGAACTCAGCCCCAGAGAGCAGCAGCTCCGCCTGTCGGACAC
TCAGCCAGCAAGTCAGAAAGTCCTGTGTGGTCACCGAGTGACAGTTCCGGGCTCCAGCCG
CCAAAAGCCATTTTTGGACCATGTGGAGTGTCAGTTGCGATGGCCGGACCAGGTCAGCCA
CATCCTCTAGGGCCAGGTACTTTCCGTAGCGAGGAGAGCCAGGGTCCGACACAGCCTGCA
CCAGCTCAGACAGTCTGTCCACGTTCTGCTGTCTCAGGGCAAAGGTGAGACTCAGCTCTT
CCTCAGGGTCCGCACGGCCCAGGGACACCCAGCCTGGGGGCAGCGTCCGCTGCTGGTCAG
GCTCCGGGCTGTAACTGCACTGGCCGGCGACAGAGAGGGCGAGGAGCCCAAGGAGGCAGG
CTCGGGGTCCCATCCGGCCTTTCTGCAGATCTGCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61879013|ref|XP_593616.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61879013|ref|XP_593616.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-107, gnl|bosTau2|chr15 (28912861-28912968)
               

               
               1-107, gnl|Hg17|chr11 (6594561-6594668)
               

               
               1-107, gnl|Mm7|chr7 (101805739-101805846)
               


               
               111-286, gnl|bosTau2|chr15 (28913151-28913326)
               

               
               111-286, gnl|Hg17|chr11 (6594786-6594961)
               

               
               111-286, gnl|Mm7|chr7 (101805962-101806134)
               


               
               414-565, gnl|bosTau2|chr15 (28913820-28913971)
               

               
               414-565, gnl|Hg17|chr11 (6595433-6595584)
               

               
               414-565, gnl|Mm7|chr7 (101806601-101806752)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-107, gnl|bosTau2|chr15 (28912861-28912968)
               

               
               1-107, gnl|Hg17|chr11 (6594561-6594668)
               

               
               1-107, gnl|Mm7|chr7 (101805739-101805846)
               


               
               111-286, gnl|bosTau2|chr15 (28913151-28913326)
               

               
               111-286, gnl|Hg17|chr11 (6594786-6594961)
               

               
               111-286, gnl|Mm7|chr7 (101805962-101806134)
               


               
               414-565, gnl|bosTau2|chr15 (28913820-28913971)
               

               
               414-565, gnl|Hg17|chr11 (6595433-6595584)
               

               
               414-565, gnl|Mm7|chr7 (101806601-101806752)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	1-107, gnl\|bosTau2\|chr15 (28912861-28912968)
	1-107, gnl\|Hg17\|chr11 (6594561-6594668)
	1-107, gnl\|Mm7\|chr7 (101805739-101805846)

	111-286, gnl\|bosTau2\|chr15 (28913151-28913326)
	111-286, gnl\|Hg17\|chr11 (6594786-6594961)
	111-286, gnl\|Mm7\|chr7 (101805962-101806134)

	414-565, gnl\|bosTau2\|chr15 (28913820-28913971)
	414-565, gnl\|Hg17\|chr11 (6595433-6595584)
	414-565, gnl\|Mm7\|chr7 (101806601-101806752)